Phenotype measure:   HMDPpheno7   phosphogluconate

ID, description, units MPD:50222   phosphogluconate   liver 6-phosphogluconate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver 6-phosphogluconate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means60078   None
Median of the strain means59022   None
SD of the strain means± 14647
Coefficient of variation (CV)0.244
Min–max range of strain means28294   –   111676   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 3955266227.2478 188346010.8213 1.5594 0.1214
Residuals 34 4106497416.9172 120779335.7917


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 73766.0 0.0   1   0.0 0.0 73766.0, 73766.0 0.93
A/J m 55575.0 5504.0   2   3892.0 0.099 51682.0, 59467.0 -0.31
AKR/J m 79534.0 0.0   1   0.0 0.0 79534.0, 79534.0 1.33
AXB10/PgnJ m 57750.0 0.0   1   0.0 0.0 57750.0, 57750.0 -0.16
AXB12/PgnJ m 70983.0 0.0   1   0.0 0.0 70983.0, 70983.0 0.74
AXB13/PgnJ m 59057.0 0.0   1   0.0 0.0 59057.0, 59057.0 -0.07
AXB15/PgnJ m 60061.0 0.0   1   0.0 0.0 60061.0, 60061.0 0.0
AXB19a/PgnJ m 60023.0 0.0   1   0.0 0.0 60023.0, 60023.0 0.0
AXB19b/PgnJ m 60886.0 6363.0   2   4500.0 0.105 56386.0, 65385.0 0.06
AXB19/PgnJ m 66031.0 0.0   1   0.0 0.0 66031.0, 66031.0 0.41
AXB1/PgnJ m 41528.0 0.0   1   0.0 0.0 41528.0, 41528.0 -1.27
AXB23/PgnJ m 50979.0 0.0   1   0.0 0.0 50979.0, 50979.0 -0.62
AXB24/PgnJ m 60629.0 15588.0   2   11022.0 0.257 49607.0, 71651.0 0.04
AXB2/PgnJ m 37444.0 0.0   1   0.0 0.0 37444.0, 37444.0 -1.55
AXB4/PgnJ m 76394.0 0.0   1   0.0 0.0 76394.0, 76394.0 1.11
AXB5/PgnJ m 50398.0 0.0   1   0.0 0.0 50398.0, 50398.0 -0.66
AXB6/PgnJ m 59092.0 0.0   1   0.0 0.0 59092.0, 59092.0 -0.07
AXB8/PgnJ m 53218.0 0.0   1   0.0 0.0 53218.0, 53218.0 -0.47
BALB/cJ m 52306.0 8480.0   3 4896.0 0.162 42818.0, 59146.0 -0.53
BTBR T+ Itpr3tf/J m 54520.0 0.0   1   0.0 0.0 54520.0, 54520.0 -0.38
BUB/BnJ m 70424.0 0.0   1   0.0 0.0 70424.0, 70424.0 0.71
BXA11/PgnJ m 55001.0 0.0   1   0.0 0.0 55001.0, 55001.0 -0.35
BXA12/PgnJ m 49123.0 0.0   1   0.0 0.0 49123.0, 49123.0 -0.75
BXA13/PgnJ m 64938.0 0.0   1   0.0 0.0 64938.0, 64938.0 0.33
BXA14/PgnJ m 96514.0 0.0   1   0.0 0.0 96514.0, 96514.0 2.49
BXA16/PgnJ m 65806.0 2413.0   2   1706.0 0.0367 64100.0, 67512.0 0.39
BXA1/PgnJ m 63630.0 0.0   1   0.0 0.0 63630.0, 63630.0 0.24
BXA24/PgnJ m 61994.0 0.0   1   0.0 0.0 61994.0, 61994.0 0.13
BXA25/PgnJ m 46238.0 0.0   1   0.0 0.0 46238.0, 46238.0 -0.94
BXA26/PgnJ m 56524.0 0.0   1   0.0 0.0 56524.0, 56524.0 -0.24
BXA2/PgnJ m 64887.0 0.0   1   0.0 0.0 64887.0, 64887.0 0.33
BXA4/PgnJ m 67741.0 0.0   1   0.0 0.0 67741.0, 67741.0 0.52
BXA7/PgnJ m 63443.0 0.0   1   0.0 0.0 63443.0, 63443.0 0.23
BXA8/PgnJ m 53784.0 0.0   1   0.0 0.0 53784.0, 53784.0 -0.43
BXD11/TyJ m 57986.0 0.0   1   0.0 0.0 57986.0, 57986.0 -0.14
BXD12/TyJ m 48792.0 0.0   1   0.0 0.0 48792.0, 48792.0 -0.77
BXD13/TyJ m 36763.0 0.0   1   0.0 0.0 36763.0, 36763.0 -1.59
BXD14/TyJ m 63865.0 0.0   1   0.0 0.0 63865.0, 63865.0 0.26
BXD15/TyJ m 65416.0 0.0   1   0.0 0.0 65416.0, 65416.0 0.36
BXD18/TyJ m 50809.0 0.0   1   0.0 0.0 50809.0, 50809.0 -0.63
BXD19/TyJ m 65348.0 15019.0   2   10620.0 0.23 54727.0, 75968.0 0.36
BXD1/TyJ m 55701.0 0.0   1   0.0 0.0 55701.0, 55701.0 -0.3
BXD20/TyJ m 93264.0 0.0   1   0.0 0.0 93264.0, 93264.0 2.27
BXD21/TyJ m 51807.0 0.0   1   0.0 0.0 51807.0, 51807.0 -0.56
BXD22/TyJ m 85767.0 0.0   1   0.0 0.0 85767.0, 85767.0 1.75
BXD24/TyJ m 48746.0 0.0   1   0.0 0.0 48746.0, 48746.0 -0.77
BXD24/TyJ-Cep290rd16/J m 70407.0 0.0   1   0.0 0.0 70407.0, 70407.0 0.71
BXD28/TyJ m 57791.0 2549.0   2   1802.0 0.0441 55989.0, 59593.0 -0.16
BXD29-Tlr4lps-2J/J m 52919.0 0.0   1   0.0 0.0 52919.0, 52919.0 -0.49
BXD2/TyJ m 111676.0 0.0   1   0.0 0.0 111676.0, 111676.0 3.52
BXD32/TyJ m 46076.0 0.0   1   0.0 0.0 46076.0, 46076.0 -0.96
BXD33/TyJ m 88353.0 0.0   1   0.0 0.0 88353.0, 88353.0 1.93
BXD34/TyJ m 49349.0 0.0   1   0.0 0.0 49349.0, 49349.0 -0.73
BXD36/TyJ m 43295.0 0.0   1   0.0 0.0 43295.0, 43295.0 -1.15
BXD38/TyJ m 40497.0 0.0   1   0.0 0.0 40497.0, 40497.0 -1.34
BXD39/TyJ m 42191.0 0.0   1   0.0 0.0 42191.0, 42191.0 -1.22
BXD40/TyJ m 57525.0 0.0   1   0.0 0.0 57525.0, 57525.0 -0.17
BXD42/TyJ m 60614.0 0.0   1   0.0 0.0 60614.0, 60614.0 0.04
BXD5/TyJ m 56031.0 0.0   1   0.0 0.0 56031.0, 56031.0 -0.28
BXD6/TyJ m 93634.0 0.0   1   0.0 0.0 93634.0, 93634.0 2.29
BXD8/TyJ m 64384.0 0.0   1   0.0 0.0 64384.0, 64384.0 0.29
BXD9/TyJ m 63741.0 0.0   1   0.0 0.0 63741.0, 63741.0 0.25
BXH10/TyJ m 58912.0 0.0   1   0.0 0.0 58912.0, 58912.0 -0.08
BXH19/TyJ m 67273.0 0.0   1   0.0 0.0 67273.0, 67273.0 0.49
BXH20/KccJ m 84302.0 0.0   1   0.0 0.0 84302.0, 84302.0 1.65
BXH22/KccJ m 71734.0 0.0   1   0.0 0.0 71734.0, 71734.0 0.8
BXH2/TyJ m 87182.0 0.0   1   0.0 0.0 87182.0, 87182.0 1.85
BXH4/TyJ m 69476.0 1365.0   2   965.0 0.0197 68510.0, 70441.0 0.64
BXH6/TyJ m 74054.0 0.0   1   0.0 0.0 74054.0, 74054.0 0.95
BXH7/TyJ m 74220.0 0.0   1   0.0 0.0 74220.0, 74220.0 0.97
BXH8/TyJ m 75885.0 0.0   1   0.0 0.0 75885.0, 75885.0 1.08
BXH9/TyJ m 28611.0 0.0   1   0.0 0.0 28611.0, 28611.0 -2.15
C3H/HeJ m 34642.0 19639.0   2   13887.0 0.567 20755.0, 48529.0 -1.74
C57BL/6J m 47968.0 9820.0   5 4392.0 0.205 38607.0, 62502.0 -0.83
C57L/J m 69222.0 0.0   1   0.0 0.0 69222.0, 69222.0 0.62
C58/J m 84126.0 0.0   1   0.0 0.0 84126.0, 84126.0 1.64
CAST/EiJ m 54258.0 0.0   1   0.0 0.0 54258.0, 54258.0 -0.4
CBA/J m 44778.0 0.0   1   0.0 0.0 44778.0, 44778.0 -1.04
CE/J m 58987.0 0.0   1   0.0 0.0 58987.0, 58987.0 -0.07
CXB11/HiAJ m 46732.0 6717.0   2   4749.0 0.144 41983.0, 51482.0 -0.91
CXB12/HiAJ m 61995.0 328.0   2   232.0 0.00529 61763.0, 62227.0 0.13
CXB13/HiAJ m 62358.0 5990.0   3 3458.0 0.0961 58340.0, 69243.0 0.16
CXB1/ByJ m 56077.0 5084.0   3 2935.0 0.0907 50849.0, 61003.0 -0.27
CXB2/ByJ m 51414.0 12303.0   3 7103.0 0.239 41777.0, 65272.0 -0.59
CXB3/ByJ m 56629.0 9574.0   2   6769.0 0.169 49860.0, 63399.0 -0.24
CXB4/ByJ m 46138.0 33579.0   2   23744.0 0.728 22394.0, 69882.0 -0.95
CXB6/ByJ m 45756.0 12417.0   3 7169.0 0.271 38566.0, 60093.0 -0.98
CXB7/ByJ m 61467.0 7356.0   2   5201.0 0.12 56266.0, 66668.0 0.09
CXB8/HiAJ m 50026.0 7907.0   3 4565.0 0.158 43083.0, 58632.0 -0.69
CXB9/HiAJ m 37556.0 13968.0   3 8065.0 0.372 21451.0, 46370.0 -1.54
DBA/2J m 54101.0 4809.0   4 2405.0 0.0889 47163.0, 58278.0 -0.41
FVB/NJ m 57630.0 0.0   1   0.0 0.0 57630.0, 57630.0 -0.17
I/LnJ m 64668.0 0.0   1   0.0 0.0 64668.0, 64668.0 0.31
KK/HlJ m 39345.0 0.0   1   0.0 0.0 39345.0, 39345.0 -1.42
LG/J m 79274.0 0.0   1   0.0 0.0 79274.0, 79274.0 1.31
LP/J m 42186.0 0.0   1   0.0 0.0 42186.0, 42186.0 -1.22
MA/MyJ m 62395.0 0.0   1   0.0 0.0 62395.0, 62395.0 0.16
NOD/ShiLtJ m 49454.0 0.0   1   0.0 0.0 49454.0, 49454.0 -0.73
NON/ShiLtJ m 28294.0 0.0   1   0.0 0.0 28294.0, 28294.0 -2.17
NZW/LacJ m 78654.0 0.0   1   0.0 0.0 78654.0, 78654.0 1.27
PL/J m 72282.0 0.0   1   0.0 0.0 72282.0, 72282.0 0.83
RIIIS/J m 49895.0 0.0   1   0.0 0.0 49895.0, 49895.0 -0.7
SEA/GnJ m 59146.0 0.0   1   0.0 0.0 59146.0, 59146.0 -0.06
SJL/J m 72227.0 0.0   1   0.0 0.0 72227.0, 72227.0 0.83
SM/J m 49743.0 0.0   1   0.0 0.0 49743.0, 49743.0 -0.71
SWR/J m 64270.0 0.0   1   0.0 0.0 64270.0, 64270.0 0.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 55574.55 7771.0789 71367.2825 39781.8175
AXB19b/PgnJ m 60885.8 7771.0789 76678.5325 45093.0675
AXB24/PgnJ m 60628.85 7771.0789 76421.5825 44836.1175
BALB/cJ m 52305.5 6345.0594 65200.2121 39410.7879
BXA16/PgnJ m 65806.4 7771.0789 81599.1325 50013.6675
BXD19/TyJ m 65347.5 7771.0789 81140.2325 49554.7675
BXD28/TyJ m 57791.2 7771.0789 73583.9325 41998.4675
BXH4/TyJ m 69475.65 7771.0789 85268.3825 53682.9175
C3H/HeJ m 34641.75 7771.0789 50434.4825 18849.0175
C57BL/6J m 47967.58 4914.8619 57955.781 37979.379
CXB11/HiAJ m 46732.05 7771.0789 62524.7825 30939.3175
CXB12/HiAJ m 61995.25 7771.0789 77787.9825 46202.5175
CXB13/HiAJ m 62357.7333 6345.0594 75252.4454 49463.0212
CXB1/ByJ m 56076.6 6345.0594 68971.3121 43181.8879
CXB2/ByJ m 51414.3667 6345.0594 64309.0788 38519.6546
CXB3/ByJ m 56629.4 7771.0789 72422.1325 40836.6675
CXB4/ByJ m 46138.4 7771.0789 61931.1325 30345.6675
CXB6/ByJ m 45755.5333 6345.0594 58650.2454 32860.8212
CXB7/ByJ m 61467.25 7771.0789 77259.9825 45674.5175
CXB8/HiAJ m 50026.1667 6345.0594 62920.8788 37131.4546
CXB9/HiAJ m 37556.0 6345.0594 50450.7121 24661.2879
DBA/2J m 54101.025 5494.9826 65268.1732 42933.8768




  GWAS USING LINEAR MIXED MODELS