Project measure / variable:   HMDPpheno7   xylonate

ID, description, units MPD:50221   xylonate   liver xylonate (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver xylonate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means828111   None
Median of the strain means809836   None
SD of the strain means± 208698
Coefficient of variation (CV)0.252
Min–max range of strain means354342   –   1552655   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1776137041010.34 84577954333.8259 4.2019 0.0001
Residuals 34 684374934174.193 20128674534.5351


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 783797.0 0.0   1   0.0 0.0 783797.0, 783797.0 -0.21
A/J m 932066.0 132474.0   2   93673.0 0.142 838393.0, 1025739.0 0.5
AKR/J m 1004610.0 0.0   1   0.0 0.0 1004610.0, 1004610.0 0.85
AXB10/PgnJ m 787179.0 0.0   1   0.0 0.0 787179.0, 787179.0 -0.2
AXB12/PgnJ m 552797.0 0.0   1   0.0 0.0 552797.0, 552797.0 -1.32
AXB13/PgnJ m 799845.0 0.0   1   0.0 0.0 799845.0, 799845.0 -0.14
AXB15/PgnJ m 1025400.0 0.0   1   0.0 0.0 1025400.0, 1025400.0 0.95
AXB19a/PgnJ m 720216.0 0.0   1   0.0 0.0 720216.0, 720216.0 -0.52
AXB19b/PgnJ m 551040.0 43448.0   2   30722.0 0.0788 520318.0, 581762.0 -1.33
AXB19/PgnJ m 634879.0 0.0   1   0.0 0.0 634879.0, 634879.0 -0.93
AXB1/PgnJ m 487730.0 0.0   1   0.0 0.0 487730.0, 487730.0 -1.63
AXB23/PgnJ m 1044038.0 0.0   1   0.0 0.0 1044038.0, 1044038.0 1.03
AXB24/PgnJ m 809563.0 189460.0   2   133969.0 0.234 675594.0, 943531.0 -0.09
AXB2/PgnJ m 792662.0 0.0   1   0.0 0.0 792662.0, 792662.0 -0.17
AXB4/PgnJ m 924512.0 0.0   1   0.0 0.0 924512.0, 924512.0 0.46
AXB5/PgnJ m 564406.0 0.0   1   0.0 0.0 564406.0, 564406.0 -1.26
AXB6/PgnJ m 564386.0 0.0   1   0.0 0.0 564386.0, 564386.0 -1.26
AXB8/PgnJ m 613446.0 0.0   1   0.0 0.0 613446.0, 613446.0 -1.03
BALB/cJ m 810109.0 179983.0   3 103913.0 0.222 615144.0, 969925.0 -0.09
BTBR T+ Itpr3tf/J m 979741.0 0.0   1   0.0 0.0 979741.0, 979741.0 0.73
BUB/BnJ m 542179.0 0.0   1   0.0 0.0 542179.0, 542179.0 -1.37
BXA11/PgnJ m 1036034.0 0.0   1   0.0 0.0 1036034.0, 1036034.0 1.0
BXA12/PgnJ m 682571.0 0.0   1   0.0 0.0 682571.0, 682571.0 -0.7
BXA13/PgnJ m 729356.0 0.0   1   0.0 0.0 729356.0, 729356.0 -0.47
BXA14/PgnJ m 354342.0 0.0   1   0.0 0.0 354342.0, 354342.0 -2.27
BXA16/PgnJ m 974877.0 134611.0   2   95184.0 0.138 879693.0, 1070061.0 0.7
BXA1/PgnJ m 673557.0 0.0   1   0.0 0.0 673557.0, 673557.0 -0.74
BXA24/PgnJ m 649046.0 0.0   1   0.0 0.0 649046.0, 649046.0 -0.86
BXA25/PgnJ m 1051787.0 0.0   1   0.0 0.0 1051787.0, 1051787.0 1.07
BXA26/PgnJ m 646255.0 0.0   1   0.0 0.0 646255.0, 646255.0 -0.87
BXA2/PgnJ m 701578.0 0.0   1   0.0 0.0 701578.0, 701578.0 -0.61
BXA4/PgnJ m 770662.0 0.0   1   0.0 0.0 770662.0, 770662.0 -0.28
BXA7/PgnJ m 594723.0 0.0   1   0.0 0.0 594723.0, 594723.0 -1.12
BXA8/PgnJ m 800314.0 0.0   1   0.0 0.0 800314.0, 800314.0 -0.13
BXD11/TyJ m 937061.0 0.0   1   0.0 0.0 937061.0, 937061.0 0.52
BXD12/TyJ m 701996.0 0.0   1   0.0 0.0 701996.0, 701996.0 -0.6
BXD13/TyJ m 1143654.0 0.0   1   0.0 0.0 1143654.0, 1143654.0 1.51
BXD14/TyJ m 668692.0 0.0   1   0.0 0.0 668692.0, 668692.0 -0.76
BXD15/TyJ m 1063142.0 0.0   1   0.0 0.0 1063142.0, 1063142.0 1.13
BXD18/TyJ m 1165751.0 0.0   1   0.0 0.0 1165751.0, 1165751.0 1.62
BXD19/TyJ m 1046383.0 467992.0   2   330920.0 0.447 715463.0, 1377304.0 1.05
BXD1/TyJ m 1154284.0 0.0   1   0.0 0.0 1154284.0, 1154284.0 1.56
BXD20/TyJ m 1552655.0 0.0   1   0.0 0.0 1552655.0, 1552655.0 3.47
BXD21/TyJ m 968692.0 0.0   1   0.0 0.0 968692.0, 968692.0 0.67
BXD22/TyJ m 753280.0 0.0   1   0.0 0.0 753280.0, 753280.0 -0.36
BXD24/TyJ m 1012460.0 0.0   1   0.0 0.0 1012460.0, 1012460.0 0.88
BXD24/TyJ-Cep290rd16/J m 1026696.0 0.0   1   0.0 0.0 1026696.0, 1026696.0 0.95
BXD28/TyJ m 740840.0 169310.0   2   119720.0 0.229 621120.0, 860560.0 -0.42
BXD29-Tlr4lps-2J/J m 1017494.0 0.0   1   0.0 0.0 1017494.0, 1017494.0 0.91
BXD2/TyJ m 1023289.0 0.0   1   0.0 0.0 1023289.0, 1023289.0 0.94
BXD32/TyJ m 750240.0 0.0   1   0.0 0.0 750240.0, 750240.0 -0.37
BXD33/TyJ m 825935.0 0.0   1   0.0 0.0 825935.0, 825935.0 -0.01
BXD34/TyJ m 587022.0 0.0   1   0.0 0.0 587022.0, 587022.0 -1.16
BXD36/TyJ m 910336.0 0.0   1   0.0 0.0 910336.0, 910336.0 0.39
BXD38/TyJ m 956148.0 0.0   1   0.0 0.0 956148.0, 956148.0 0.61
BXD39/TyJ m 1203821.0 0.0   1   0.0 0.0 1203821.0, 1203821.0 1.8
BXD40/TyJ m 916761.0 0.0   1   0.0 0.0 916761.0, 916761.0 0.42
BXD42/TyJ m 1208231.0 0.0   1   0.0 0.0 1208231.0, 1208231.0 1.82
BXD5/TyJ m 819014.0 0.0   1   0.0 0.0 819014.0, 819014.0 -0.04
BXD6/TyJ m 940586.0 0.0   1   0.0 0.0 940586.0, 940586.0 0.54
BXD8/TyJ m 1018756.0 0.0   1   0.0 0.0 1018756.0, 1018756.0 0.91
BXD9/TyJ m 1070860.0 0.0   1   0.0 0.0 1070860.0, 1070860.0 1.16
BXH10/TyJ m 521100.0 0.0   1   0.0 0.0 521100.0, 521100.0 -1.47
BXH19/TyJ m 663130.0 0.0   1   0.0 0.0 663130.0, 663130.0 -0.79
BXH20/KccJ m 891881.0 0.0   1   0.0 0.0 891881.0, 891881.0 0.31
BXH22/KccJ m 1048398.0 0.0   1   0.0 0.0 1048398.0, 1048398.0 1.06
BXH2/TyJ m 696187.0 0.0   1   0.0 0.0 696187.0, 696187.0 -0.63
BXH4/TyJ m 697581.0 37871.0   2   26779.0 0.0543 670802.0, 724360.0 -0.63
BXH6/TyJ m 778314.0 0.0   1   0.0 0.0 778314.0, 778314.0 -0.24
BXH7/TyJ m 679445.0 0.0   1   0.0 0.0 679445.0, 679445.0 -0.71
BXH8/TyJ m 670444.0 0.0   1   0.0 0.0 670444.0, 670444.0 -0.76
BXH9/TyJ m 895523.0 0.0   1   0.0 0.0 895523.0, 895523.0 0.32
C3H/HeJ m 704001.0 180927.0   2   127935.0 0.257 576066.0, 831936.0 -0.59
C57BL/6J m 583183.0 123077.0   5 55042.0 0.211 417905.0, 731442.0 -1.17
C57L/J m 923837.0 0.0   1   0.0 0.0 923837.0, 923837.0 0.46
C58/J m 383762.0 0.0   1   0.0 0.0 383762.0, 383762.0 -2.13
CAST/EiJ m 666501.0 0.0   1   0.0 0.0 666501.0, 666501.0 -0.77
CBA/J m 864112.0 0.0   1   0.0 0.0 864112.0, 864112.0 0.17
CE/J m 944745.0 0.0   1   0.0 0.0 944745.0, 944745.0 0.56
CXB11/HiAJ m 953118.0 23475.0   2   16599.0 0.0246 936519.0, 969717.0 0.6
CXB12/HiAJ m 624785.0 32613.0   2   23061.0 0.0522 601724.0, 647846.0 -0.97
CXB13/HiAJ m 842974.0 184457.0   3 106496.0 0.219 705250.0, 1052542.0 0.07
CXB1/ByJ m 729530.0 139223.0   3 80380.0 0.191 617151.0, 885275.0 -0.47
CXB2/ByJ m 759580.0 59184.0   3 34170.0 0.0779 706171.0, 823209.0 -0.33
CXB3/ByJ m 898644.0 37811.0   2   26737.0 0.0421 871907.0, 925380.0 0.34
CXB4/ByJ m 749727.0 34105.0   2   24116.0 0.0455 725611.0, 773843.0 -0.38
CXB6/ByJ m 584225.0 96922.0   3 55958.0 0.166 474179.0, 656893.0 -1.17
CXB7/ByJ m 611084.0 104124.0   2   73627.0 0.17 537457.0, 684711.0 -1.04
CXB8/HiAJ m 619417.0 56795.0   3 32790.0 0.0917 554661.0, 660776.0 -1.0
CXB9/HiAJ m 629643.0 118226.0   3 68258.0 0.188 499808.0, 731092.0 -0.95
DBA/2J m 1200789.0 84908.0   4 42454.0 0.0707 1148641.0, 1327722.0 1.79
FVB/NJ m 855422.0 0.0   1   0.0 0.0 855422.0, 855422.0 0.13
I/LnJ m 878428.0 0.0   1   0.0 0.0 878428.0, 878428.0 0.24
KK/HlJ m 961224.0 0.0   1   0.0 0.0 961224.0, 961224.0 0.64
LG/J m 960803.0 0.0   1   0.0 0.0 960803.0, 960803.0 0.64
LP/J m 942085.0 0.0   1   0.0 0.0 942085.0, 942085.0 0.55
MA/MyJ m 745041.0 0.0   1   0.0 0.0 745041.0, 745041.0 -0.4
NOD/ShiLtJ m 829364.0 0.0   1   0.0 0.0 829364.0, 829364.0 0.01
NON/ShiLtJ m 554416.0 0.0   1   0.0 0.0 554416.0, 554416.0 -1.31
NZW/LacJ m 901274.0 0.0   1   0.0 0.0 901274.0, 901274.0 0.35
PL/J m 1100134.0 0.0   1   0.0 0.0 1100134.0, 1100134.0 1.3
RIIIS/J m 1279227.0 0.0   1   0.0 0.0 1279227.0, 1279227.0 2.16
SEA/GnJ m 955408.0 0.0   1   0.0 0.0 955408.0, 955408.0 0.61
SJL/J m 494085.0 0.0   1   0.0 0.0 494085.0, 494085.0 -1.6
SM/J m 672889.0 0.0   1   0.0 0.0 672889.0, 672889.0 -0.74
SWR/J m 1060529.0 0.0   1   0.0 0.0 1060529.0, 1060529.0 1.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 932066.15 100321.1706 1135943.2981 728189.0019
AXB19b/PgnJ m 551040.05 100321.1706 754917.1981 347162.9019
AXB24/PgnJ m 809562.7 100321.1706 1013439.8481 605685.5519
BALB/cJ m 810108.9 81911.8928 976573.8943 643643.9057
BXA16/PgnJ m 974877.0 100321.1706 1178754.1481 770999.8519
BXD19/TyJ m 1046383.1 100321.1706 1250260.2481 842505.9519
BXD28/TyJ m 740840.15 100321.1706 944717.2981 536963.0019
BXH4/TyJ m 697580.95 100321.1706 901458.0981 493703.8019
C3H/HeJ m 704000.7 100321.1706 907877.8481 500123.5519
C57BL/6J m 583183.28 63448.6793 712126.5102 454240.0498
CXB11/HiAJ m 953118.1 100321.1706 1156995.2481 749240.9519
CXB12/HiAJ m 624784.85 100321.1706 828661.9981 420907.7019
CXB13/HiAJ m 842974.1333 81911.8928 1009439.1277 676509.139
CXB1/ByJ m 729529.6667 81911.8928 895994.661 563064.6723
CXB2/ByJ m 759580.2 81911.8928 926045.1943 593115.2057
CXB3/ByJ m 898643.7 100321.1706 1102520.8481 694766.5519
CXB4/ByJ m 749727.05 100321.1706 953604.1981 545849.9019
CXB6/ByJ m 584224.6667 81911.8928 750689.661 417759.6723
CXB7/ByJ m 611084.05 100321.1706 814961.1981 407206.9019
CXB8/HiAJ m 619417.2 81911.8928 785882.1943 452952.2057
CXB9/HiAJ m 629642.8 81911.8928 796107.7943 463177.8057
DBA/2J m 1200788.65 70937.78 1344951.5639 1056625.7361




  GWAS USING LINEAR MIXED MODELS