Phenotype measure:   HMDPpheno7   ribulose

ID, description, units MPD:50219   ribulose   liver ribulose (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver ribulose (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means112836   None
Median of the strain means103489   None
SD of the strain means± 47270
Coefficient of variation (CV)0.419
Min–max range of strain means19401   –   367874   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 65214031286.2867 3105430061.2517 2.0419 0.0311
Residuals 34 51710091773.2983 1520885052.1558


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 89365.0 0.0   1   0.0 0.0 89365.0, 89365.0 -0.5
A/J m 144600.0 33169.0   2   23454.0 0.229 121146.0, 168054.0 0.67
AKR/J m 77364.0 0.0   1   0.0 0.0 77364.0, 77364.0 -0.75
AXB10/PgnJ m 129507.0 0.0   1   0.0 0.0 129507.0, 129507.0 0.35
AXB12/PgnJ m 126458.0 0.0   1   0.0 0.0 126458.0, 126458.0 0.29
AXB13/PgnJ m 112623.0 0.0   1   0.0 0.0 112623.0, 112623.0 0.0
AXB15/PgnJ m 137764.0 0.0   1   0.0 0.0 137764.0, 137764.0 0.53
AXB19a/PgnJ m 254243.0 0.0   1   0.0 0.0 254243.0, 254243.0 2.99
AXB19b/PgnJ m 166539.0 3559.0   2   2517.0 0.0214 164023.0, 169056.0 1.14
AXB19/PgnJ m 123437.0 0.0   1   0.0 0.0 123437.0, 123437.0 0.22
AXB1/PgnJ m 84687.0 0.0   1   0.0 0.0 84687.0, 84687.0 -0.6
AXB23/PgnJ m 90636.0 0.0   1   0.0 0.0 90636.0, 90636.0 -0.47
AXB24/PgnJ m 141672.0 97208.0   2   68737.0 0.686 72935.0, 210409.0 0.61
AXB2/PgnJ m 103709.0 0.0   1   0.0 0.0 103709.0, 103709.0 -0.19
AXB4/PgnJ m 88775.0 0.0   1   0.0 0.0 88775.0, 88775.0 -0.51
AXB5/PgnJ m 86457.0 0.0   1   0.0 0.0 86457.0, 86457.0 -0.56
AXB6/PgnJ m 102788.0 0.0   1   0.0 0.0 102788.0, 102788.0 -0.21
AXB8/PgnJ m 121172.0 0.0   1   0.0 0.0 121172.0, 121172.0 0.18
BALB/cJ m 130461.0 31823.0   3 18373.0 0.244 102625.0, 165154.0 0.37
BTBR T+ Itpr3tf/J m 122048.0 0.0   1   0.0 0.0 122048.0, 122048.0 0.19
BUB/BnJ m 129629.0 0.0   1   0.0 0.0 129629.0, 129629.0 0.36
BXA11/PgnJ m 86008.0 0.0   1   0.0 0.0 86008.0, 86008.0 -0.57
BXA12/PgnJ m 52535.0 0.0   1   0.0 0.0 52535.0, 52535.0 -1.28
BXA13/PgnJ m 79332.0 0.0   1   0.0 0.0 79332.0, 79332.0 -0.71
BXA14/PgnJ m 367874.0 0.0   1   0.0 0.0 367874.0, 367874.0 5.4
BXA16/PgnJ m 103738.0 28314.0   2   20021.0 0.273 83718.0, 123759.0 -0.19
BXA1/PgnJ m 91130.0 0.0   1   0.0 0.0 91130.0, 91130.0 -0.46
BXA24/PgnJ m 157961.0 0.0   1   0.0 0.0 157961.0, 157961.0 0.95
BXA25/PgnJ m 89990.0 0.0   1   0.0 0.0 89990.0, 89990.0 -0.48
BXA26/PgnJ m 81454.0 0.0   1   0.0 0.0 81454.0, 81454.0 -0.66
BXA2/PgnJ m 149095.0 0.0   1   0.0 0.0 149095.0, 149095.0 0.77
BXA4/PgnJ m 117217.0 0.0   1   0.0 0.0 117217.0, 117217.0 0.09
BXA7/PgnJ m 27769.0 0.0   1   0.0 0.0 27769.0, 27769.0 -1.8
BXA8/PgnJ m 114021.0 0.0   1   0.0 0.0 114021.0, 114021.0 0.03
BXD11/TyJ m 48090.0 0.0   1   0.0 0.0 48090.0, 48090.0 -1.37
BXD12/TyJ m 54150.0 0.0   1   0.0 0.0 54150.0, 54150.0 -1.24
BXD13/TyJ m 176806.0 0.0   1   0.0 0.0 176806.0, 176806.0 1.35
BXD14/TyJ m 121707.0 0.0   1   0.0 0.0 121707.0, 121707.0 0.19
BXD15/TyJ m 102763.0 0.0   1   0.0 0.0 102763.0, 102763.0 -0.21
BXD18/TyJ m 101132.0 0.0   1   0.0 0.0 101132.0, 101132.0 -0.25
BXD19/TyJ m 102528.0 792.0   2   560.0 0.00772 101968.0, 103088.0 -0.22
BXD1/TyJ m 120546.0 0.0   1   0.0 0.0 120546.0, 120546.0 0.16
BXD20/TyJ m 101815.0 0.0   1   0.0 0.0 101815.0, 101815.0 -0.23
BXD21/TyJ m 108148.0 0.0   1   0.0 0.0 108148.0, 108148.0 -0.1
BXD22/TyJ m 101668.0 0.0   1   0.0 0.0 101668.0, 101668.0 -0.24
BXD24/TyJ m 118009.0 0.0   1   0.0 0.0 118009.0, 118009.0 0.11
BXD24/TyJ-Cep290rd16/J m 104506.0 0.0   1   0.0 0.0 104506.0, 104506.0 -0.18
BXD28/TyJ m 100778.0 12864.0   2   9096.0 0.128 91682.0, 109874.0 -0.26
BXD29-Tlr4lps-2J/J m 84390.0 0.0   1   0.0 0.0 84390.0, 84390.0 -0.6
BXD2/TyJ m 66803.0 0.0   1   0.0 0.0 66803.0, 66803.0 -0.97
BXD32/TyJ m 61966.0 0.0   1   0.0 0.0 61966.0, 61966.0 -1.08
BXD33/TyJ m 123251.0 0.0   1   0.0 0.0 123251.0, 123251.0 0.22
BXD34/TyJ m 73355.0 0.0   1   0.0 0.0 73355.0, 73355.0 -0.84
BXD36/TyJ m 62717.0 0.0   1   0.0 0.0 62717.0, 62717.0 -1.06
BXD38/TyJ m 19401.0 0.0   1   0.0 0.0 19401.0, 19401.0 -1.98
BXD39/TyJ m 222703.0 0.0   1   0.0 0.0 222703.0, 222703.0 2.32
BXD40/TyJ m 68100.0 0.0   1   0.0 0.0 68100.0, 68100.0 -0.95
BXD42/TyJ m 109491.0 0.0   1   0.0 0.0 109491.0, 109491.0 -0.07
BXD5/TyJ m 159345.0 0.0   1   0.0 0.0 159345.0, 159345.0 0.98
BXD6/TyJ m 92076.0 0.0   1   0.0 0.0 92076.0, 92076.0 -0.44
BXD8/TyJ m 102554.0 0.0   1   0.0 0.0 102554.0, 102554.0 -0.22
BXD9/TyJ m 155738.0 0.0   1   0.0 0.0 155738.0, 155738.0 0.91
BXH10/TyJ m 65309.0 0.0   1   0.0 0.0 65309.0, 65309.0 -1.01
BXH19/TyJ m 254408.0 0.0   1   0.0 0.0 254408.0, 254408.0 2.99
BXH20/KccJ m 106075.0 0.0   1   0.0 0.0 106075.0, 106075.0 -0.14
BXH22/KccJ m 82962.0 0.0   1   0.0 0.0 82962.0, 82962.0 -0.63
BXH2/TyJ m 103269.0 0.0   1   0.0 0.0 103269.0, 103269.0 -0.2
BXH4/TyJ m 153248.0 58215.0   2   41164.0 0.38 112084.0, 194413.0 0.85
BXH6/TyJ m 131245.0 0.0   1   0.0 0.0 131245.0, 131245.0 0.39
BXH7/TyJ m 90446.0 0.0   1   0.0 0.0 90446.0, 90446.0 -0.47
BXH8/TyJ m 160854.0 0.0   1   0.0 0.0 160854.0, 160854.0 1.02
BXH9/TyJ m 102310.0 0.0   1   0.0 0.0 102310.0, 102310.0 -0.22
C3H/HeJ m 202718.0 107773.0   2   76207.0 0.532 126511.0, 278925.0 1.9
C57BL/6J m 81858.0 26039.0   5 11645.0 0.318 40308.0, 106414.0 -0.66
C57L/J m 48397.0 0.0   1   0.0 0.0 48397.0, 48397.0 -1.36
C58/J m 119897.0 0.0   1   0.0 0.0 119897.0, 119897.0 0.15
CAST/EiJ m 127353.0 0.0   1   0.0 0.0 127353.0, 127353.0 0.31
CBA/J m 77421.0 0.0   1   0.0 0.0 77421.0, 77421.0 -0.75
CE/J m 147334.0 0.0   1   0.0 0.0 147334.0, 147334.0 0.73
CXB11/HiAJ m 58082.0 14291.0   2   10105.0 0.246 47977.0, 68187.0 -1.16
CXB12/HiAJ m 108728.0 5737.0   2   4057.0 0.0528 104671.0, 112785.0 -0.09
CXB13/HiAJ m 93820.0 31927.0   3 18433.0 0.34 57614.0, 117937.0 -0.4
CXB1/ByJ m 144920.0 50738.0   3 29294.0 0.35 109352.0, 203022.0 0.68
CXB2/ByJ m 74264.0 35287.0   3 20373.0 0.475 35872.0, 105279.0 -0.82
CXB3/ByJ m 152223.0 14809.0   2   10471.0 0.0973 141752.0, 162694.0 0.83
CXB4/ByJ m 176140.0 27212.0   2   19242.0 0.154 156898.0, 195381.0 1.34
CXB6/ByJ m 77206.0 18497.0   3 10679.0 0.24 62725.0, 98043.0 -0.75
CXB7/ByJ m 102928.0 4717.0   2   3336.0 0.0458 99592.0, 106264.0 -0.21
CXB8/HiAJ m 130025.0 31989.0   3 18469.0 0.246 96086.0, 159619.0 0.36
CXB9/HiAJ m 103126.0 35730.0   3 20629.0 0.346 67015.0, 138463.0 -0.21
DBA/2J m 119048.0 37672.0   4 18836.0 0.316 84606.0, 161519.0 0.13
FVB/NJ m 82029.0 0.0   1   0.0 0.0 82029.0, 82029.0 -0.65
I/LnJ m 144589.0 0.0   1   0.0 0.0 144589.0, 144589.0 0.67
KK/HlJ m 81252.0 0.0   1   0.0 0.0 81252.0, 81252.0 -0.67
LG/J m 120036.0 0.0   1   0.0 0.0 120036.0, 120036.0 0.15
LP/J m 125637.0 0.0   1   0.0 0.0 125637.0, 125637.0 0.27
MA/MyJ m 180147.0 0.0   1   0.0 0.0 180147.0, 180147.0 1.42
NOD/ShiLtJ m 139418.0 0.0   1   0.0 0.0 139418.0, 139418.0 0.56
NON/ShiLtJ m 68446.0 0.0   1   0.0 0.0 68446.0, 68446.0 -0.94
NZW/LacJ m 91980.0 0.0   1   0.0 0.0 91980.0, 91980.0 -0.44
PL/J m 102913.0 0.0   1   0.0 0.0 102913.0, 102913.0 -0.21
RIIIS/J m 106556.0 0.0   1   0.0 0.0 106556.0, 106556.0 -0.13
SEA/GnJ m 77946.0 0.0   1   0.0 0.0 77946.0, 77946.0 -0.74
SJL/J m 114127.0 0.0   1   0.0 0.0 114127.0, 114127.0 0.03
SM/J m 93276.0 0.0   1   0.0 0.0 93276.0, 93276.0 -0.41
SWR/J m 90080.0 0.0   1   0.0 0.0 90080.0, 90080.0 -0.48


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 144600.4 27576.1224 200641.8233 88558.9767
AXB19b/PgnJ m 166539.4 27576.1224 222580.8233 110497.9767
AXB24/PgnJ m 141672.0 27576.1224 197713.4233 85630.5767
BALB/cJ m 130461.3333 22515.8096 176218.9639 84703.7028
BXA16/PgnJ m 103738.45 27576.1224 159779.8733 47697.0267
BXD19/TyJ m 102528.25 27576.1224 158569.6733 46486.8267
BXD28/TyJ m 100777.95 27576.1224 156819.3733 44736.5267
BXH4/TyJ m 153248.5 27576.1224 209289.9233 97207.0767
C3H/HeJ m 202718.2 27576.1224 258759.6233 146676.7767
C57BL/6J m 81857.6 17440.6712 117301.3082 46413.8918
CXB11/HiAJ m 58082.15 27576.1224 114123.5733 2040.7267
CXB12/HiAJ m 108728.2 27576.1224 164769.6233 52686.7767
CXB13/HiAJ m 93819.5333 22515.8096 139577.1639 48061.9028
CXB1/ByJ m 144920.0667 22515.8096 190677.6972 99162.4361
CXB2/ByJ m 74263.9 22515.8096 120021.5305 28506.2695
CXB3/ByJ m 152222.9 27576.1224 208264.3233 96181.4767
CXB4/ByJ m 176139.75 27576.1224 232181.1733 120098.3267
CXB6/ByJ m 77206.3333 22515.8096 122963.9639 31448.7028
CXB7/ByJ m 102928.1 27576.1224 158969.5233 46886.6767
CXB8/HiAJ m 130025.3667 22515.8096 175782.9972 84267.7361
CXB9/HiAJ m 103125.5 22515.8096 148883.1305 57367.8695
DBA/2J m 119048.4 19499.2631 158675.6705 79421.1295




  GWAS USING LINEAR MIXED MODELS