Project measure / variable:   HMDPpheno7   ribose

ID, description, units MPD:50218   ribose   liver ribose (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver ribose (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means3025517   None
Median of the strain means2976944   None
SD of the strain means± 883339
Coefficient of variation (CV)0.292
Min–max range of strain means700031   –   5087497   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 32440929946662.2 1544806187936.29 2.3594 0.0126
Residuals 34 22261099308820.5 654738214965.308


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 2308058.0 0.0   1   0.0 0.0 2308058.0, 2308058.0 -0.81
A/J m 3340724.0 1393045.0   2   985031.0 0.417 2355693.0, 4325756.0 0.36
AKR/J m 1981316.0 0.0   1   0.0 0.0 1981316.0, 1981316.0 -1.18
AXB10/PgnJ m 3989469.0 0.0   1   0.0 0.0 3989469.0, 3989469.0 1.09
AXB12/PgnJ m 2336904.0 0.0   1   0.0 0.0 2336904.0, 2336904.0 -0.78
AXB13/PgnJ m 3076992.0 0.0   1   0.0 0.0 3076992.0, 3076992.0 0.06
AXB15/PgnJ m 1758247.0 0.0   1   0.0 0.0 1758247.0, 1758247.0 -1.43
AXB19a/PgnJ m 4132088.0 0.0   1   0.0 0.0 4132088.0, 4132088.0 1.25
AXB19b/PgnJ m 5087497.0 1439873.0   2   1018144.0 0.283 4069353.0, 6105640.0 2.33
AXB19/PgnJ m 3920910.0 0.0   1   0.0 0.0 3920910.0, 3920910.0 1.01
AXB1/PgnJ m 2480285.0 0.0   1   0.0 0.0 2480285.0, 2480285.0 -0.62
AXB23/PgnJ m 3927705.0 0.0   1   0.0 0.0 3927705.0, 3927705.0 1.02
AXB24/PgnJ m 3521315.0 1212503.0   2   857369.0 0.344 2663946.0, 4378684.0 0.56
AXB2/PgnJ m 2066251.0 0.0   1   0.0 0.0 2066251.0, 2066251.0 -1.09
AXB4/PgnJ m 3092007.0 0.0   1   0.0 0.0 3092007.0, 3092007.0 0.08
AXB5/PgnJ m 2519424.0 0.0   1   0.0 0.0 2519424.0, 2519424.0 -0.57
AXB6/PgnJ m 4436551.0 0.0   1   0.0 0.0 4436551.0, 4436551.0 1.6
AXB8/PgnJ m 2664174.0 0.0   1   0.0 0.0 2664174.0, 2664174.0 -0.41
BALB/cJ m 2639904.0 553627.0   3 319636.0 0.21 2199944.0, 3261541.0 -0.44
BTBR T+ Itpr3tf/J m 2846339.0 0.0   1   0.0 0.0 2846339.0, 2846339.0 -0.2
BUB/BnJ m 2383926.0 0.0   1   0.0 0.0 2383926.0, 2383926.0 -0.73
BXA11/PgnJ m 2224040.0 0.0   1   0.0 0.0 2224040.0, 2224040.0 -0.91
BXA12/PgnJ m 700031.0 0.0   1   0.0 0.0 700031.0, 700031.0 -2.63
BXA13/PgnJ m 3016818.0 0.0   1   0.0 0.0 3016818.0, 3016818.0 -0.01
BXA14/PgnJ m 4702412.0 0.0   1   0.0 0.0 4702412.0, 4702412.0 1.9
BXA16/PgnJ m 2751598.0 1368242.0   2   967493.0 0.497 1784104.0, 3719091.0 -0.31
BXA1/PgnJ m 3683293.0 0.0   1   0.0 0.0 3683293.0, 3683293.0 0.74
BXA24/PgnJ m 4520904.0 0.0   1   0.0 0.0 4520904.0, 4520904.0 1.69
BXA25/PgnJ m 1669499.0 0.0   1   0.0 0.0 1669499.0, 1669499.0 -1.54
BXA26/PgnJ m 3134506.0 0.0   1   0.0 0.0 3134506.0, 3134506.0 0.12
BXA2/PgnJ m 3364079.0 0.0   1   0.0 0.0 3364079.0, 3364079.0 0.38
BXA4/PgnJ m 2078947.0 0.0   1   0.0 0.0 2078947.0, 2078947.0 -1.07
BXA7/PgnJ m 3237853.0 0.0   1   0.0 0.0 3237853.0, 3237853.0 0.24
BXA8/PgnJ m 2235166.0 0.0   1   0.0 0.0 2235166.0, 2235166.0 -0.89
BXD11/TyJ m 1517843.0 0.0   1   0.0 0.0 1517843.0, 1517843.0 -1.71
BXD12/TyJ m 2216280.0 0.0   1   0.0 0.0 2216280.0, 2216280.0 -0.92
BXD13/TyJ m 4472778.0 0.0   1   0.0 0.0 4472778.0, 4472778.0 1.64
BXD14/TyJ m 4352452.0 0.0   1   0.0 0.0 4352452.0, 4352452.0 1.5
BXD15/TyJ m 4956914.0 0.0   1   0.0 0.0 4956914.0, 4956914.0 2.19
BXD18/TyJ m 3373148.0 0.0   1   0.0 0.0 3373148.0, 3373148.0 0.39
BXD19/TyJ m 3549415.0 680144.0   2   480934.0 0.192 3068480.0, 4030349.0 0.59
BXD1/TyJ m 4178552.0 0.0   1   0.0 0.0 4178552.0, 4178552.0 1.31
BXD20/TyJ m 3466715.0 0.0   1   0.0 0.0 3466715.0, 3466715.0 0.5
BXD21/TyJ m 2317200.0 0.0   1   0.0 0.0 2317200.0, 2317200.0 -0.8
BXD22/TyJ m 3785549.0 0.0   1   0.0 0.0 3785549.0, 3785549.0 0.86
BXD24/TyJ m 2500152.0 0.0   1   0.0 0.0 2500152.0, 2500152.0 -0.59
BXD24/TyJ-Cep290rd16/J m 2768602.0 0.0   1   0.0 0.0 2768602.0, 2768602.0 -0.29
BXD28/TyJ m 3514408.0 731614.0   2   517329.0 0.208 2997079.0, 4031738.0 0.55
BXD29-Tlr4lps-2J/J m 3188221.0 0.0   1   0.0 0.0 3188221.0, 3188221.0 0.18
BXD2/TyJ m 2820670.0 0.0   1   0.0 0.0 2820670.0, 2820670.0 -0.23
BXD32/TyJ m 3305002.0 0.0   1   0.0 0.0 3305002.0, 3305002.0 0.32
BXD33/TyJ m 3313584.0 0.0   1   0.0 0.0 3313584.0, 3313584.0 0.33
BXD34/TyJ m 2247435.0 0.0   1   0.0 0.0 2247435.0, 2247435.0 -0.88
BXD36/TyJ m 2361860.0 0.0   1   0.0 0.0 2361860.0, 2361860.0 -0.75
BXD38/TyJ m 2059898.0 0.0   1   0.0 0.0 2059898.0, 2059898.0 -1.09
BXD39/TyJ m 3991653.0 0.0   1   0.0 0.0 3991653.0, 3991653.0 1.09
BXD40/TyJ m 2203634.0 0.0   1   0.0 0.0 2203634.0, 2203634.0 -0.93
BXD42/TyJ m 3810170.0 0.0   1   0.0 0.0 3810170.0, 3810170.0 0.89
BXD5/TyJ m 3429450.0 0.0   1   0.0 0.0 3429450.0, 3429450.0 0.46
BXD6/TyJ m 2849687.0 0.0   1   0.0 0.0 2849687.0, 2849687.0 -0.2
BXD8/TyJ m 1926184.0 0.0   1   0.0 0.0 1926184.0, 1926184.0 -1.24
BXD9/TyJ m 4868943.0 0.0   1   0.0 0.0 4868943.0, 4868943.0 2.09
BXH10/TyJ m 3155410.0 0.0   1   0.0 0.0 3155410.0, 3155410.0 0.15
BXH19/TyJ m 4704400.0 0.0   1   0.0 0.0 4704400.0, 4704400.0 1.9
BXH20/KccJ m 3674956.0 0.0   1   0.0 0.0 3674956.0, 3674956.0 0.74
BXH22/KccJ m 2931898.0 0.0   1   0.0 0.0 2931898.0, 2931898.0 -0.11
BXH2/TyJ m 3027618.0 0.0   1   0.0 0.0 3027618.0, 3027618.0 0.0
BXH4/TyJ m 4469852.0 127204.0   2   89947.0 0.0285 4379906.0, 4559799.0 1.64
BXH6/TyJ m 4613473.0 0.0   1   0.0 0.0 4613473.0, 4613473.0 1.8
BXH7/TyJ m 2788472.0 0.0   1   0.0 0.0 2788472.0, 2788472.0 -0.27
BXH8/TyJ m 3880577.0 0.0   1   0.0 0.0 3880577.0, 3880577.0 0.97
BXH9/TyJ m 2022367.0 0.0   1   0.0 0.0 2022367.0, 2022367.0 -1.14
C3H/HeJ m 3358513.0 678172.0   2   479540.0 0.202 2878973.0, 3838052.0 0.38
C57BL/6J m 2490550.0 721335.0   5 322591.0 0.29 1378871.0, 3226348.0 -0.61
C57L/J m 2166716.0 0.0   1   0.0 0.0 2166716.0, 2166716.0 -0.97
C58/J m 2525623.0 0.0   1   0.0 0.0 2525623.0, 2525623.0 -0.57
CAST/EiJ m 3458085.0 0.0   1   0.0 0.0 3458085.0, 3458085.0 0.49
CBA/J m 1851472.0 0.0   1   0.0 0.0 1851472.0, 1851472.0 -1.33
CE/J m 2438471.0 0.0   1   0.0 0.0 2438471.0, 2438471.0 -0.66
CXB11/HiAJ m 2029960.0 985604.0   2   696927.0 0.486 1333032.0, 2726887.0 -1.13
CXB12/HiAJ m 2641816.0 420254.0   2   297165.0 0.159 2344652.0, 2938981.0 -0.43
CXB13/HiAJ m 2529612.0 1028912.0   3 594042.0 0.407 1805832.0, 3707446.0 -0.56
CXB1/ByJ m 3822292.0 108204.0   3 62472.0 0.0283 3750886.0, 3946787.0 0.9
CXB2/ByJ m 2076096.0 824048.0   3 475764.0 0.397 1304560.0, 2944154.0 -1.07
CXB3/ByJ m 3566612.0 426070.0   2   301277.0 0.119 3265335.0, 3867889.0 0.61
CXB4/ByJ m 4405893.0 1003282.0   2   709427.0 0.228 3696466.0, 5115320.0 1.56
CXB6/ByJ m 2111524.0 644728.0   3 372234.0 0.305 1445548.0, 2732662.0 -1.03
CXB7/ByJ m 3159740.0 498538.0   2   352519.0 0.158 2807221.0, 3512259.0 0.15
CXB8/HiAJ m 3020786.0 680520.0   3 392899.0 0.225 2526133.0, 3796881.0 -0.01
CXB9/HiAJ m 3087063.0 992333.0   3 572924.0 0.321 2054370.0, 4033390.0 0.07
DBA/2J m 2462587.0 555654.0   4 277827.0 0.226 2092616.0, 3283134.0 -0.64
FVB/NJ m 2417736.0 0.0   1   0.0 0.0 2417736.0, 2417736.0 -0.69
I/LnJ m 1934342.0 0.0   1   0.0 0.0 1934342.0, 1934342.0 -1.24
KK/HlJ m 1823554.0 0.0   1   0.0 0.0 1823554.0, 1823554.0 -1.36
LG/J m 2311766.0 0.0   1   0.0 0.0 2311766.0, 2311766.0 -0.81
LP/J m 2937071.0 0.0   1   0.0 0.0 2937071.0, 2937071.0 -0.1
MA/MyJ m 2851680.0 0.0   1   0.0 0.0 2851680.0, 2851680.0 -0.2
NOD/ShiLtJ m 2345140.0 0.0   1   0.0 0.0 2345140.0, 2345140.0 -0.77
NON/ShiLtJ m 2414018.0 0.0   1   0.0 0.0 2414018.0, 2414018.0 -0.69
NZW/LacJ m 3317379.0 0.0   1   0.0 0.0 3317379.0, 3317379.0 0.33
PL/J m 2173923.0 0.0   1   0.0 0.0 2173923.0, 2173923.0 -0.96
RIIIS/J m 3545245.0 0.0   1   0.0 0.0 3545245.0, 3545245.0 0.59
SEA/GnJ m 3140164.0 0.0   1   0.0 0.0 3140164.0, 3140164.0 0.13
SJL/J m 2363190.0 0.0   1   0.0 0.0 2363190.0, 2363190.0 -0.75
SM/J m 3026365.0 0.0   1   0.0 0.0 3026365.0, 3026365.0 0.0
SWR/J m 4455142.0 0.0   1   0.0 0.0 4455142.0, 4455142.0 1.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 3340724.15 572161.7844 4503496.7947 2177951.5053
AXB19b/PgnJ m 5087496.75 572161.7844 6250269.3947 3924724.1053
AXB24/PgnJ m 3521314.65 572161.7844 4684087.2947 2358542.0053
BALB/cJ m 2639903.6 467168.1407 3589303.4888 1690503.7112
BXA16/PgnJ m 2751597.9 572161.7844 3914370.5447 1588825.2553
BXD19/TyJ m 3549414.75 572161.7844 4712187.3947 2386642.1053
BXD28/TyJ m 3514408.25 572161.7844 4677180.8947 2351635.6053
BXH4/TyJ m 4469852.25 572161.7844 5632624.8947 3307079.6053
C3H/HeJ m 3358512.75 572161.7844 4521285.3947 2195740.1053
C57BL/6J m 2490549.84 361866.8857 3225951.8316 1755147.8484
CXB11/HiAJ m 2029959.8 572161.7844 3192732.4447 867187.1553
CXB12/HiAJ m 2641816.15 572161.7844 3804588.7947 1479043.5053
CXB13/HiAJ m 2529611.6333 467168.1407 3479011.5221 1580211.7445
CXB1/ByJ m 3822292.0333 467168.1407 4771691.9221 2872892.1445
CXB2/ByJ m 2076096.5 467168.1407 3025496.3888 1126696.6112
CXB3/ByJ m 3566612.15 572161.7844 4729384.7947 2403839.5053
CXB4/ByJ m 4405892.75 572161.7844 5568665.3947 3243120.1053
CXB6/ByJ m 2111524.0333 467168.1407 3060923.9221 1162124.1445
CXB7/ByJ m 3159740.05 572161.7844 4322512.6947 1996967.4053
CXB8/HiAJ m 3020785.7667 467168.1407 3970185.6555 2071385.8779
CXB9/HiAJ m 3087062.8667 467168.1407 4036462.7555 2137662.9779
DBA/2J m 2462587.05 404579.4777 3284791.4721 1640382.6279




  GWAS USING LINEAR MIXED MODELS