Phenotype measure:   HMDPpheno7   ribitol

ID, description, units MPD:50217   ribitol   liver ribitol (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver ribitol (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1614648   None
Median of the strain means1518184   None
SD of the strain means± 581219
Coefficient of variation (CV)0.360
Min–max range of strain means435239   –   3342517   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 11402291324752.3 542966253559.634 2.2749 0.016
Residuals 34 8115058696796.3 238678196964.597


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1041547.0 0.0   1   0.0 0.0 1041547.0, 1041547.0 -0.99
A/J m 798978.0 408151.0   2   288607.0 0.511 510371.0, 1087584.0 -1.4
AKR/J m 2216757.0 0.0   1   0.0 0.0 2216757.0, 2216757.0 1.04
AXB10/PgnJ m 1435262.0 0.0   1   0.0 0.0 1435262.0, 1435262.0 -0.31
AXB12/PgnJ m 1102143.0 0.0   1   0.0 0.0 1102143.0, 1102143.0 -0.88
AXB13/PgnJ m 1051797.0 0.0   1   0.0 0.0 1051797.0, 1051797.0 -0.97
AXB15/PgnJ m 1099514.0 0.0   1   0.0 0.0 1099514.0, 1099514.0 -0.89
AXB19a/PgnJ m 1338300.0 0.0   1   0.0 0.0 1338300.0, 1338300.0 -0.48
AXB19b/PgnJ m 1637248.0 236222.0   2   167034.0 0.144 1470214.0, 1804283.0 0.04
AXB19/PgnJ m 2223072.0 0.0   1   0.0 0.0 2223072.0, 2223072.0 1.05
AXB1/PgnJ m 1152995.0 0.0   1   0.0 0.0 1152995.0, 1152995.0 -0.79
AXB23/PgnJ m 1249023.0 0.0   1   0.0 0.0 1249023.0, 1249023.0 -0.63
AXB24/PgnJ m 933835.0 477843.0   2   337886.0 0.512 595949.0, 1271721.0 -1.17
AXB2/PgnJ m 649454.0 0.0   1   0.0 0.0 649454.0, 649454.0 -1.66
AXB4/PgnJ m 1283088.0 0.0   1   0.0 0.0 1283088.0, 1283088.0 -0.57
AXB5/PgnJ m 564994.0 0.0   1   0.0 0.0 564994.0, 564994.0 -1.81
AXB6/PgnJ m 1211131.0 0.0   1   0.0 0.0 1211131.0, 1211131.0 -0.69
AXB8/PgnJ m 1251828.0 0.0   1   0.0 0.0 1251828.0, 1251828.0 -0.62
BALB/cJ m 1555330.0 198900.0   3 114835.0 0.128 1326718.0, 1688702.0 -0.1
BTBR T+ Itpr3tf/J m 1715289.0 0.0   1   0.0 0.0 1715289.0, 1715289.0 0.17
BUB/BnJ m 1374851.0 0.0   1   0.0 0.0 1374851.0, 1374851.0 -0.41
BXA11/PgnJ m 941070.0 0.0   1   0.0 0.0 941070.0, 941070.0 -1.16
BXA12/PgnJ m 718231.0 0.0   1   0.0 0.0 718231.0, 718231.0 -1.54
BXA13/PgnJ m 1513956.0 0.0   1   0.0 0.0 1513956.0, 1513956.0 -0.17
BXA14/PgnJ m 1049808.0 0.0   1   0.0 0.0 1049808.0, 1049808.0 -0.97
BXA16/PgnJ m 1732447.0 192179.0   2   135891.0 0.111 1596556.0, 1868338.0 0.2
BXA1/PgnJ m 2206570.0 0.0   1   0.0 0.0 2206570.0, 2206570.0 1.02
BXA24/PgnJ m 2264595.0 0.0   1   0.0 0.0 2264595.0, 2264595.0 1.12
BXA25/PgnJ m 1476831.0 0.0   1   0.0 0.0 1476831.0, 1476831.0 -0.24
BXA26/PgnJ m 1185924.0 0.0   1   0.0 0.0 1185924.0, 1185924.0 -0.74
BXA2/PgnJ m 1667742.0 0.0   1   0.0 0.0 1667742.0, 1667742.0 0.09
BXA4/PgnJ m 920465.0 0.0   1   0.0 0.0 920465.0, 920465.0 -1.19
BXA7/PgnJ m 1472067.0 0.0   1   0.0 0.0 1472067.0, 1472067.0 -0.25
BXA8/PgnJ m 1662465.0 0.0   1   0.0 0.0 1662465.0, 1662465.0 0.08
BXD11/TyJ m 2187296.0 0.0   1   0.0 0.0 2187296.0, 2187296.0 0.99
BXD12/TyJ m 1515278.0 0.0   1   0.0 0.0 1515278.0, 1515278.0 -0.17
BXD13/TyJ m 1563508.0 0.0   1   0.0 0.0 1563508.0, 1563508.0 -0.09
BXD14/TyJ m 2381400.0 0.0   1   0.0 0.0 2381400.0, 2381400.0 1.32
BXD15/TyJ m 3224766.0 0.0   1   0.0 0.0 3224766.0, 3224766.0 2.77
BXD18/TyJ m 1759221.0 0.0   1   0.0 0.0 1759221.0, 1759221.0 0.25
BXD19/TyJ m 2458176.0 553787.0   2   391587.0 0.225 2066589.0, 2849763.0 1.45
BXD1/TyJ m 1996423.0 0.0   1   0.0 0.0 1996423.0, 1996423.0 0.66
BXD20/TyJ m 2753017.0 0.0   1   0.0 0.0 2753017.0, 2753017.0 1.96
BXD21/TyJ m 1263209.0 0.0   1   0.0 0.0 1263209.0, 1263209.0 -0.6
BXD22/TyJ m 2599284.0 0.0   1   0.0 0.0 2599284.0, 2599284.0 1.69
BXD24/TyJ m 1337881.0 0.0   1   0.0 0.0 1337881.0, 1337881.0 -0.48
BXD24/TyJ-Cep290rd16/J m 2232027.0 0.0   1   0.0 0.0 2232027.0, 2232027.0 1.06
BXD28/TyJ m 1886192.0 41124.0   2   29079.0 0.0218 1857112.0, 1915271.0 0.47
BXD29-Tlr4lps-2J/J m 1649192.0 0.0   1   0.0 0.0 1649192.0, 1649192.0 0.06
BXD2/TyJ m 2154737.0 0.0   1   0.0 0.0 2154737.0, 2154737.0 0.93
BXD32/TyJ m 3055149.0 0.0   1   0.0 0.0 3055149.0, 3055149.0 2.48
BXD33/TyJ m 1595811.0 0.0   1   0.0 0.0 1595811.0, 1595811.0 -0.03
BXD34/TyJ m 1641950.0 0.0   1   0.0 0.0 1641950.0, 1641950.0 0.05
BXD36/TyJ m 2549179.0 0.0   1   0.0 0.0 2549179.0, 2549179.0 1.61
BXD38/TyJ m 435239.0 0.0   1   0.0 0.0 435239.0, 435239.0 -2.03
BXD39/TyJ m 1731973.0 0.0   1   0.0 0.0 1731973.0, 1731973.0 0.2
BXD40/TyJ m 2256049.0 0.0   1   0.0 0.0 2256049.0, 2256049.0 1.1
BXD42/TyJ m 1061598.0 0.0   1   0.0 0.0 1061598.0, 1061598.0 -0.95
BXD5/TyJ m 2089982.0 0.0   1   0.0 0.0 2089982.0, 2089982.0 0.82
BXD6/TyJ m 2129783.0 0.0   1   0.0 0.0 2129783.0, 2129783.0 0.89
BXD8/TyJ m 907950.0 0.0   1   0.0 0.0 907950.0, 907950.0 -1.22
BXD9/TyJ m 1658381.0 0.0   1   0.0 0.0 1658381.0, 1658381.0 0.08
BXH10/TyJ m 1416344.0 0.0   1   0.0 0.0 1416344.0, 1416344.0 -0.34
BXH19/TyJ m 1239501.0 0.0   1   0.0 0.0 1239501.0, 1239501.0 -0.65
BXH20/KccJ m 3342517.0 0.0   1   0.0 0.0 3342517.0, 3342517.0 2.97
BXH22/KccJ m 1942770.0 0.0   1   0.0 0.0 1942770.0, 1942770.0 0.56
BXH2/TyJ m 2133285.0 0.0   1   0.0 0.0 2133285.0, 2133285.0 0.89
BXH4/TyJ m 2461280.0 206986.0   2   146361.0 0.0841 2314918.0, 2607641.0 1.46
BXH6/TyJ m 2417492.0 0.0   1   0.0 0.0 2417492.0, 2417492.0 1.38
BXH7/TyJ m 1116172.0 0.0   1   0.0 0.0 1116172.0, 1116172.0 -0.86
BXH8/TyJ m 1517257.0 0.0   1   0.0 0.0 1517257.0, 1517257.0 -0.17
BXH9/TyJ m 1832897.0 0.0   1   0.0 0.0 1832897.0, 1832897.0 0.38
C3H/HeJ m 2130308.0 832435.0   2   588620.0 0.391 1541687.0, 2718928.0 0.89
C57BL/6J m 1220827.0 624432.0   5 279255.0 0.511 616890.0, 1905543.0 -0.68
C57L/J m 1348930.0 0.0   1   0.0 0.0 1348930.0, 1348930.0 -0.46
C58/J m 2937260.0 0.0   1   0.0 0.0 2937260.0, 2937260.0 2.28
CAST/EiJ m 1372008.0 0.0   1   0.0 0.0 1372008.0, 1372008.0 -0.42
CBA/J m 1512493.0 0.0   1   0.0 0.0 1512493.0, 1512493.0 -0.18
CE/J m 1560969.0 0.0   1   0.0 0.0 1560969.0, 1560969.0 -0.09
CXB11/HiAJ m 1565949.0 128100.0   2   90581.0 0.0818 1475368.0, 1656529.0 -0.08
CXB12/HiAJ m 1116906.0 72924.0   2   51565.0 0.0653 1065341.0, 1168471.0 -0.86
CXB13/HiAJ m 1508802.0 504743.0   3 291414.0 0.335 1022335.0, 2030026.0 -0.18
CXB1/ByJ m 1980827.0 387072.0   3 223476.0 0.195 1675492.0, 2416165.0 0.63
CXB2/ByJ m 1568435.0 581771.0   3 335886.0 0.371 1185158.0, 2237862.0 -0.08
CXB3/ByJ m 1480418.0 263243.0   2   186141.0 0.178 1294277.0, 1666559.0 -0.23
CXB4/ByJ m 2044363.0 848901.0   2   600264.0 0.415 1444099.0, 2644626.0 0.74
CXB6/ByJ m 822233.0 66307.0   3 38283.0 0.0806 745686.0, 861946.0 -1.36
CXB7/ByJ m 1778257.0 990479.0   2   700375.0 0.557 1077883.0, 2478632.0 0.28
CXB8/HiAJ m 1071297.0 169125.0   3 97645.0 0.158 954814.0, 1265285.0 -0.93
CXB9/HiAJ m 1406819.0 841505.0   3 485843.0 0.598 645430.0, 2310339.0 -0.36
DBA/2J m 1068960.0 247245.0   4 123623.0 0.231 907749.0, 1432831.0 -0.94
FVB/NJ m 870211.0 0.0   1   0.0 0.0 870211.0, 870211.0 -1.28
I/LnJ m 1235147.0 0.0   1   0.0 0.0 1235147.0, 1235147.0 -0.65
KK/HlJ m 1067379.0 0.0   1   0.0 0.0 1067379.0, 1067379.0 -0.94
LG/J m 1972315.0 0.0   1   0.0 0.0 1972315.0, 1972315.0 0.62
LP/J m 1585586.0 0.0   1   0.0 0.0 1585586.0, 1585586.0 -0.05
MA/MyJ m 1519110.0 0.0   1   0.0 0.0 1519110.0, 1519110.0 -0.16
NOD/ShiLtJ m 1153820.0 0.0   1   0.0 0.0 1153820.0, 1153820.0 -0.79
NON/ShiLtJ m 1162149.0 0.0   1   0.0 0.0 1162149.0, 1162149.0 -0.78
NZW/LacJ m 1254402.0 0.0   1   0.0 0.0 1254402.0, 1254402.0 -0.62
PL/J m 1968194.0 0.0   1   0.0 0.0 1968194.0, 1968194.0 0.61
RIIIS/J m 2525472.0 0.0   1   0.0 0.0 2525472.0, 2525472.0 1.57
SEA/GnJ m 1310801.0 0.0   1   0.0 0.0 1310801.0, 1310801.0 -0.52
SJL/J m 1845126.0 0.0   1   0.0 0.0 1845126.0, 1845126.0 0.4
SM/J m 1003212.0 0.0   1   0.0 0.0 1003212.0, 1003212.0 -1.05
SWR/J m 1990954.0 0.0   1   0.0 0.0 1990954.0, 1990954.0 0.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 798977.9 345454.9153 1501026.7548 96929.0452
AXB19b/PgnJ m 1637248.35 345454.9153 2339297.2048 935199.4952
AXB24/PgnJ m 933835.2 345454.9153 1635884.0548 231786.3452
BALB/cJ m 1555330.3667 282062.7572 2128550.8562 982109.8771
BXA16/PgnJ m 1732447.05 345454.9153 2434495.9048 1030398.1952
BXD19/TyJ m 2458176.15 345454.9153 3160225.0048 1756127.2952
BXD28/TyJ m 1886191.65 345454.9153 2588240.5048 1184142.7952
BXH4/TyJ m 2461279.65 345454.9153 3163328.5048 1759230.7952
C3H/HeJ m 2130307.6 345454.9153 2832356.4548 1428258.7452
C57BL/6J m 1220826.96 218484.8722 1664841.642 776812.278
CXB11/HiAJ m 1565948.65 345454.9153 2267997.5048 863899.7952
CXB12/HiAJ m 1116906.0 345454.9153 1818954.8548 414857.1452
CXB13/HiAJ m 1508802.3667 282062.7572 2082022.8562 935581.8771
CXB1/ByJ m 1980827.0 282062.7572 2554047.4896 1407606.5104
CXB2/ByJ m 1568434.6 282062.7572 2141655.0896 995214.1104
CXB3/ByJ m 1480418.15 345454.9153 2182467.0048 778369.2952
CXB4/ByJ m 2044362.7 345454.9153 2746411.5548 1342313.8452
CXB6/ByJ m 822232.7333 282062.7572 1395453.2229 249012.2438
CXB7/ByJ m 1778257.4 345454.9153 2480306.2548 1076208.5452
CXB8/HiAJ m 1071296.7333 282062.7572 1644517.2229 498076.2438
CXB9/HiAJ m 1406818.8 282062.7572 1980039.2896 833598.3104
DBA/2J m 1068959.975 244273.5132 1565383.4809 572536.4691




  GWAS USING LINEAR MIXED MODELS