Phenotype measure:   HMDPpheno7   phosphoglycerate

ID, description, units MPD:50214   phosphoglycerate   liver 3-phosphoglycerate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver 3-phosphoglycerate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means317326   None
Median of the strain means281378   None
SD of the strain means± 118080
Coefficient of variation (CV)0.372
Min–max range of strain means154670   –   806467   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 223089062588.383 10623288694.6849 2.8668 0.0033
Residuals 33 122284964729.671 3705604991.8082


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 192060.0 0.0   1   0.0 0.0 192060.0, 192060.0 -1.06
A/J m 290696.0 16129.0   2   11405.0 0.0555 279291.0, 302101.0 -0.23
AKR/J m 479866.0 0.0   1   0.0 0.0 479866.0, 479866.0 1.38
AXB10/PgnJ m 192405.0 0.0   1   0.0 0.0 192405.0, 192405.0 -1.06
AXB12/PgnJ m 221592.0 0.0   1   0.0 0.0 221592.0, 221592.0 -0.81
AXB13/PgnJ m 195432.0 0.0   1   0.0 0.0 195432.0, 195432.0 -1.03
AXB15/PgnJ m 264159.0 0.0   1   0.0 0.0 264159.0, 264159.0 -0.45
AXB19a/PgnJ m 255740.0 0.0   1   0.0 0.0 255740.0, 255740.0 -0.52
AXB19b/PgnJ m 224823.0 91360.0   2   64602.0 0.406 160222.0, 289425.0 -0.78
AXB19/PgnJ m 195136.0 0.0   1   0.0 0.0 195136.0, 195136.0 -1.03
AXB1/PgnJ m 340466.0 0.0   1   0.0 0.0 340466.0, 340466.0 0.2
AXB23/PgnJ m 286441.0 0.0   1   0.0 0.0 286441.0, 286441.0 -0.26
AXB24/PgnJ m 273194.0 8622.0   2   6097.0 0.0316 267098.0, 279291.0 -0.37
AXB2/PgnJ m 205786.0 0.0   1   0.0 0.0 205786.0, 205786.0 -0.94
AXB4/PgnJ m 228826.0 0.0   1   0.0 0.0 228826.0, 228826.0 -0.75
AXB5/PgnJ m 154670.0 0.0   1   0.0 0.0 154670.0, 154670.0 -1.38
AXB6/PgnJ m 239767.0 0.0   1   0.0 0.0 239767.0, 239767.0 -0.66
AXB8/PgnJ m 235025.0 0.0   1   0.0 0.0 235025.0, 235025.0 -0.7
BALB/cJ m 257108.0 21752.0   3 12558.0 0.0846 234000.0, 277186.0 -0.51
BTBR T+ Itpr3tf/J m 318386.0 0.0   1   0.0 0.0 318386.0, 318386.0 0.01
BUB/BnJ m 255397.0 0.0   1   0.0 0.0 255397.0, 255397.0 -0.52
BXA11/PgnJ m 219771.0 0.0   1   0.0 0.0 219771.0, 219771.0 -0.83
BXA12/PgnJ m 457816.0 0.0   1   0.0 0.0 457816.0, 457816.0 1.19
BXA13/PgnJ m 420273.0 0.0   1   0.0 0.0 420273.0, 420273.0 0.87
BXA14/PgnJ m 322390.0 0.0   1   0.0 0.0 322390.0, 322390.0 0.04
BXA16/PgnJ m 323121.0 92223.0   2   65211.0 0.285 257909.0, 388332.0 0.05
BXA1/PgnJ m 272460.0 0.0   1   0.0 0.0 272460.0, 272460.0 -0.38
BXA24/PgnJ m 192580.0 0.0   1   0.0 0.0 192580.0, 192580.0 -1.06
BXA25/PgnJ m 336204.0 0.0   1   0.0 0.0 336204.0, 336204.0 0.16
BXA26/PgnJ m 182590.0 0.0   1   0.0 0.0 182590.0, 182590.0 -1.14
BXA2/PgnJ m 241676.0 0.0   1   0.0 0.0 241676.0, 241676.0 -0.64
BXA4/PgnJ m 806467.0 0.0   1   0.0 0.0 806467.0, 806467.0 4.14
BXA7/PgnJ m 314548.0 0.0   1   0.0 0.0 314548.0, 314548.0 -0.02
BXA8/PgnJ m 253821.0 0.0   1   0.0 0.0 253821.0, 253821.0 -0.54
BXD11/TyJ m 411168.0 0.0   1   0.0 0.0 411168.0, 411168.0 0.79
BXD12/TyJ m 317855.0 0.0   1   0.0 0.0 317855.0, 317855.0 0.0
BXD13/TyJ m 263997.0 0.0   1   0.0 0.0 263997.0, 263997.0 -0.45
BXD14/TyJ m 365387.0 0.0   1   0.0 0.0 365387.0, 365387.0 0.41
BXD15/TyJ m 519354.0 0.0   1   0.0 0.0 519354.0, 519354.0 1.71
BXD18/TyJ m 279063.0 0.0   1   0.0 0.0 279063.0, 279063.0 -0.32
BXD19/TyJ m 283006.0 79493.0   2   56210.0 0.281 226796.0, 339216.0 -0.29
BXD1/TyJ m 374496.0 0.0   1   0.0 0.0 374496.0, 374496.0 0.48
BXD20/TyJ m 471558.0 0.0   1   0.0 0.0 471558.0, 471558.0 1.31
BXD21/TyJ m 231217.0 0.0   1   0.0 0.0 231217.0, 231217.0 -0.73
BXD22/TyJ m 280621.0 0.0   1   0.0 0.0 280621.0, 280621.0 -0.31
BXD24/TyJ m 330545.0 0.0   1   0.0 0.0 330545.0, 330545.0 0.11
BXD24/TyJ-Cep290rd16/J m 490060.0 0.0   1   0.0 0.0 490060.0, 490060.0 1.46
BXD28/TyJ m 311416.0 62371.0   2   44103.0 0.2 267313.0, 355519.0 -0.05
BXD29-Tlr4lps-2J/J m 166389.0 0.0   1   0.0 0.0 166389.0, 166389.0 -1.28
BXD2/TyJ m 281378.0 0.0   1   0.0 0.0 281378.0, 281378.0 -0.3
BXD32/TyJ m 290898.0 0.0   1   0.0 0.0 290898.0, 290898.0 -0.22
BXD33/TyJ m 785693.0 0.0   1   0.0 0.0 785693.0, 785693.0 3.97
BXD34/TyJ m 178982.0 0.0   1   0.0 0.0 178982.0, 178982.0 -1.17
BXD36/TyJ m 625558.0 0.0   1   0.0 0.0 625558.0, 625558.0 2.61
BXD38/TyJ m 270086.0 0.0   1   0.0 0.0 270086.0, 270086.0 -0.4
BXD39/TyJ m 333269.0 0.0   1   0.0 0.0 333269.0, 333269.0 0.14
BXD40/TyJ m 465282.0 0.0   1   0.0 0.0 465282.0, 465282.0 1.25
BXD42/TyJ m 421088.0 0.0   1   0.0 0.0 421088.0, 421088.0 0.88
BXD5/TyJ m 356356.0 0.0   1   0.0 0.0 356356.0, 356356.0 0.33
BXD6/TyJ m 356238.0 0.0   1   0.0 0.0 356238.0, 356238.0 0.33
BXD8/TyJ m 392374.0 0.0   1   0.0 0.0 392374.0, 392374.0 0.64
BXD9/TyJ m 280330.0 0.0   1   0.0 0.0 280330.0, 280330.0 -0.31
BXH10/TyJ m 288392.0 0.0   1   0.0 0.0 288392.0, 288392.0 -0.25
BXH19/TyJ m 279187.0 0.0   1   0.0 0.0 279187.0, 279187.0 -0.32
BXH20/KccJ m 336283.0 0.0   1   0.0 0.0 336283.0, 336283.0 0.16
BXH22/KccJ m 278806.0 0.0   1   0.0 0.0 278806.0, 278806.0 -0.33
BXH2/TyJ m 267189.0 0.0   1   0.0 0.0 267189.0, 267189.0 -0.42
BXH4/TyJ m 319292.0 10978.0   2   7763.0 0.0344 311529.0, 327054.0 0.02
BXH6/TyJ m 319938.0 0.0   1   0.0 0.0 319938.0, 319938.0 0.02
BXH7/TyJ m 415369.0 0.0   1   0.0 0.0 415369.0, 415369.0 0.83
BXH8/TyJ m 203970.0 0.0   1   0.0 0.0 203970.0, 203970.0 -0.96
BXH9/TyJ m 256076.0 0.0   1   0.0 0.0 256076.0, 256076.0 -0.52
C3H/HeJ m 266864.0 65116.0   2   46044.0 0.244 220820.0, 312908.0 -0.43
C57BL/6J m 224048.0 44580.0   4 22290.0 0.199 170328.0, 278866.0 -0.79
C57L/J m 250452.0 0.0   1   0.0 0.0 250452.0, 250452.0 -0.57
C58/J m 272098.0 0.0   1   0.0 0.0 272098.0, 272098.0 -0.38
CAST/EiJ m 595819.0 0.0   1   0.0 0.0 595819.0, 595819.0 2.36
CBA/J m 290936.0 0.0   1   0.0 0.0 290936.0, 290936.0 -0.22
CE/J m 301474.0 0.0   1   0.0 0.0 301474.0, 301474.0 -0.13
CXB11/HiAJ m 402775.0 187880.0   2   132851.0 0.466 269924.0, 535627.0 0.72
CXB12/HiAJ m 192009.0 6889.0   2   4871.0 0.0359 187138.0, 196880.0 -1.06
CXB13/HiAJ m 353776.0 55526.0   3 32058.0 0.157 310217.0, 416300.0 0.31
CXB1/ByJ m 261570.0 13549.0   3 7823.0 0.0518 245924.0, 269400.0 -0.47
CXB2/ByJ m 271633.0 13830.0   3 7985.0 0.0509 255664.0, 279716.0 -0.39
CXB3/ByJ m 248749.0 16137.0   2   11411.0 0.0649 237338.0, 260160.0 -0.58
CXB4/ByJ m 347817.0 487.0   2   345.0 0.0014 347472.0, 348161.0 0.26
CXB6/ByJ m 218897.0 70299.0   3 40587.0 0.321 160627.0, 296974.0 -0.83
CXB7/ByJ m 292970.0 99739.0   2   70526.0 0.34 222444.0, 363496.0 -0.21
CXB8/HiAJ m 243919.0 23709.0   3 13688.0 0.0972 224338.0, 270278.0 -0.62
CXB9/HiAJ m 233669.0 55829.0   3 32233.0 0.239 172433.0, 281738.0 -0.71
DBA/2J m 437392.0 68087.0   4 34044.0 0.156 375220.0, 533312.0 1.02
FVB/NJ m 225385.0 0.0   1   0.0 0.0 225385.0, 225385.0 -0.78
I/LnJ m 415542.0 0.0   1   0.0 0.0 415542.0, 415542.0 0.83
KK/HlJ m 181233.0 0.0   1   0.0 0.0 181233.0, 181233.0 -1.15
LG/J m 390663.0 0.0   1   0.0 0.0 390663.0, 390663.0 0.62
LP/J m 256180.0 0.0   1   0.0 0.0 256180.0, 256180.0 -0.52
MA/MyJ m 425126.0 0.0   1   0.0 0.0 425126.0, 425126.0 0.91
NOD/ShiLtJ m 203043.0 0.0   1   0.0 0.0 203043.0, 203043.0 -0.97
NON/ShiLtJ m 462401.0 0.0   1   0.0 0.0 462401.0, 462401.0 1.23
PL/J m 418834.0 0.0   1   0.0 0.0 418834.0, 418834.0 0.86
RIIIS/J m 359751.0 0.0   1   0.0 0.0 359751.0, 359751.0 0.36
SEA/GnJ m 278252.0 0.0   1   0.0 0.0 278252.0, 278252.0 -0.33
SJL/J m 233778.0 0.0   1   0.0 0.0 233778.0, 233778.0 -0.71
SM/J m 629479.0 0.0   1   0.0 0.0 629479.0, 629479.0 2.64
SWR/J m 383797.0 0.0   1   0.0 0.0 383797.0, 383797.0 0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 290695.75 43044.1924 378269.8178 203121.6822
AXB19b/PgnJ m 224823.05 43044.1924 312397.1178 137248.9822
AXB24/PgnJ m 273194.25 43044.1924 360768.3178 185620.1822
BALB/cJ m 257108.3333 35145.4359 328612.2603 185604.4064
BXA16/PgnJ m 323120.6 43044.1924 410694.6678 235546.5322
BXD19/TyJ m 283006.35 43044.1924 370580.4178 195432.2822
BXD28/TyJ m 311416.05 43044.1924 398990.1178 223841.9822
BXH4/TyJ m 319291.5 43044.1924 406865.5678 231717.4322
C3H/HeJ m 266863.8 43044.1924 354437.8678 179289.7322
C57BL/6J m 224047.525 30436.8403 285971.7422 162123.3078
CXB11/HiAJ m 402775.25 43044.1924 490349.3178 315201.1822
CXB12/HiAJ m 192008.8 43044.1924 279582.8678 104434.7322
CXB13/HiAJ m 353776.2667 35145.4359 425280.1936 282272.3397
CXB1/ByJ m 261569.6333 35145.4359 333073.5603 190065.7064
CXB2/ByJ m 271633.0 35145.4359 343136.927 200129.073
CXB3/ByJ m 248749.3 43044.1924 336323.3678 161175.2322
CXB4/ByJ m 347816.7 43044.1924 435390.7678 260242.6322
CXB6/ByJ m 218896.6667 35145.4359 290400.5936 147392.7397
CXB7/ByJ m 292970.1 43044.1924 380544.1678 205396.0322
CXB8/HiAJ m 243918.6667 35145.4359 315422.5936 172414.7397
CXB9/HiAJ m 233669.4 35145.4359 305173.327 162165.473
DBA/2J m 437391.9 30436.8403 499316.1172 375467.6828




  GWAS USING LINEAR MIXED MODELS