Phenotype measure:   HMDPpheno7   glycerate

ID, description, units MPD:50212   glycerate   liver glycerate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver glycerate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means139895   None
Median of the strain means132328   None
SD of the strain means± 61370
Coefficient of variation (CV)0.439
Min–max range of strain means72525   –   594549   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 21321876285.1751 1015327442.1512 1.4673 0.1561
Residuals 34 23527367978.4842 691981411.1319


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 357829.0 0.0   1   0.0 0.0 357829.0, 357829.0 3.55
A/J m 122191.0 21448.0   2   15166.0 0.176 107025.0, 137358.0 -0.29
AKR/J m 141888.0 0.0   1   0.0 0.0 141888.0, 141888.0 0.03
AXB10/PgnJ m 120662.0 0.0   1   0.0 0.0 120662.0, 120662.0 -0.31
AXB12/PgnJ m 123135.0 0.0   1   0.0 0.0 123135.0, 123135.0 -0.27
AXB13/PgnJ m 106372.0 0.0   1   0.0 0.0 106372.0, 106372.0 -0.55
AXB15/PgnJ m 173733.0 0.0   1   0.0 0.0 173733.0, 173733.0 0.55
AXB19a/PgnJ m 161241.0 0.0   1   0.0 0.0 161241.0, 161241.0 0.35
AXB19b/PgnJ m 106238.0 17434.0   2   12327.0 0.164 93910.0, 118565.0 -0.55
AXB19/PgnJ m 112897.0 0.0   1   0.0 0.0 112897.0, 112897.0 -0.44
AXB1/PgnJ m 72525.0 0.0   1   0.0 0.0 72525.0, 72525.0 -1.1
AXB23/PgnJ m 101531.0 0.0   1   0.0 0.0 101531.0, 101531.0 -0.63
AXB24/PgnJ m 114779.0 47520.0   2   33602.0 0.414 81177.0, 148380.0 -0.41
AXB2/PgnJ m 109372.0 0.0   1   0.0 0.0 109372.0, 109372.0 -0.5
AXB4/PgnJ m 94166.0 0.0   1   0.0 0.0 94166.0, 94166.0 -0.75
AXB5/PgnJ m 74868.0 0.0   1   0.0 0.0 74868.0, 74868.0 -1.06
AXB6/PgnJ m 94927.0 0.0   1   0.0 0.0 94927.0, 94927.0 -0.73
AXB8/PgnJ m 86924.0 0.0   1   0.0 0.0 86924.0, 86924.0 -0.86
BALB/cJ m 157507.0 19499.0   3 11258.0 0.124 139790.0, 178399.0 0.29
BTBR T+ Itpr3tf/J m 127562.0 0.0   1   0.0 0.0 127562.0, 127562.0 -0.2
BUB/BnJ m 134706.0 0.0   1   0.0 0.0 134706.0, 134706.0 -0.08
BXA11/PgnJ m 121229.0 0.0   1   0.0 0.0 121229.0, 121229.0 -0.3
BXA12/PgnJ m 135079.0 0.0   1   0.0 0.0 135079.0, 135079.0 -0.08
BXA13/PgnJ m 117593.0 0.0   1   0.0 0.0 117593.0, 117593.0 -0.36
BXA14/PgnJ m 219438.0 0.0   1   0.0 0.0 219438.0, 219438.0 1.3
BXA16/PgnJ m 146885.0 18145.0   2   12831.0 0.124 134054.0, 159716.0 0.11
BXA1/PgnJ m 97973.0 0.0   1   0.0 0.0 97973.0, 97973.0 -0.68
BXA24/PgnJ m 110259.0 0.0   1   0.0 0.0 110259.0, 110259.0 -0.48
BXA25/PgnJ m 146788.0 0.0   1   0.0 0.0 146788.0, 146788.0 0.11
BXA26/PgnJ m 84420.0 0.0   1   0.0 0.0 84420.0, 84420.0 -0.9
BXA2/PgnJ m 104584.0 0.0   1   0.0 0.0 104584.0, 104584.0 -0.58
BXA4/PgnJ m 140751.0 0.0   1   0.0 0.0 140751.0, 140751.0 0.01
BXA7/PgnJ m 108533.0 0.0   1   0.0 0.0 108533.0, 108533.0 -0.51
BXA8/PgnJ m 106414.0 0.0   1   0.0 0.0 106414.0, 106414.0 -0.55
BXD11/TyJ m 134701.0 0.0   1   0.0 0.0 134701.0, 134701.0 -0.08
BXD12/TyJ m 112270.0 0.0   1   0.0 0.0 112270.0, 112270.0 -0.45
BXD13/TyJ m 169669.0 0.0   1   0.0 0.0 169669.0, 169669.0 0.49
BXD14/TyJ m 118750.0 0.0   1   0.0 0.0 118750.0, 118750.0 -0.34
BXD15/TyJ m 161059.0 0.0   1   0.0 0.0 161059.0, 161059.0 0.34
BXD18/TyJ m 120820.0 0.0   1   0.0 0.0 120820.0, 120820.0 -0.31
BXD19/TyJ m 149361.0 40447.0   2   28600.0 0.271 120761.0, 177961.0 0.15
BXD1/TyJ m 130822.0 0.0   1   0.0 0.0 130822.0, 130822.0 -0.15
BXD20/TyJ m 149572.0 0.0   1   0.0 0.0 149572.0, 149572.0 0.16
BXD21/TyJ m 131358.0 0.0   1   0.0 0.0 131358.0, 131358.0 -0.14
BXD22/TyJ m 135518.0 0.0   1   0.0 0.0 135518.0, 135518.0 -0.07
BXD24/TyJ m 140482.0 0.0   1   0.0 0.0 140482.0, 140482.0 0.01
BXD24/TyJ-Cep290rd16/J m 136874.0 0.0   1   0.0 0.0 136874.0, 136874.0 -0.05
BXD28/TyJ m 121737.0 7954.0   2   5625.0 0.0653 116112.0, 127361.0 -0.3
BXD29-Tlr4lps-2J/J m 120547.0 0.0   1   0.0 0.0 120547.0, 120547.0 -0.32
BXD2/TyJ m 91208.0 0.0   1   0.0 0.0 91208.0, 91208.0 -0.79
BXD32/TyJ m 117085.0 0.0   1   0.0 0.0 117085.0, 117085.0 -0.37
BXD33/TyJ m 189869.0 0.0   1   0.0 0.0 189869.0, 189869.0 0.81
BXD34/TyJ m 108491.0 0.0   1   0.0 0.0 108491.0, 108491.0 -0.51
BXD36/TyJ m 179749.0 0.0   1   0.0 0.0 179749.0, 179749.0 0.65
BXD38/TyJ m 139700.0 0.0   1   0.0 0.0 139700.0, 139700.0 0.0
BXD39/TyJ m 139147.0 0.0   1   0.0 0.0 139147.0, 139147.0 -0.01
BXD40/TyJ m 153666.0 0.0   1   0.0 0.0 153666.0, 153666.0 0.22
BXD42/TyJ m 140201.0 0.0   1   0.0 0.0 140201.0, 140201.0 0.0
BXD5/TyJ m 148682.0 0.0   1   0.0 0.0 148682.0, 148682.0 0.14
BXD6/TyJ m 142059.0 0.0   1   0.0 0.0 142059.0, 142059.0 0.04
BXD8/TyJ m 137842.0 0.0   1   0.0 0.0 137842.0, 137842.0 -0.03
BXD9/TyJ m 134044.0 0.0   1   0.0 0.0 134044.0, 134044.0 -0.1
BXH10/TyJ m 81555.0 0.0   1   0.0 0.0 81555.0, 81555.0 -0.95
BXH19/TyJ m 144136.0 0.0   1   0.0 0.0 144136.0, 144136.0 0.07
BXH20/KccJ m 164886.0 0.0   1   0.0 0.0 164886.0, 164886.0 0.41
BXH22/KccJ m 131786.0 0.0   1   0.0 0.0 131786.0, 131786.0 -0.13
BXH2/TyJ m 122248.0 0.0   1   0.0 0.0 122248.0, 122248.0 -0.29
BXH4/TyJ m 110481.0 33054.0   2   23373.0 0.299 87109.0, 133854.0 -0.48
BXH6/TyJ m 119830.0 0.0   1   0.0 0.0 119830.0, 119830.0 -0.33
BXH7/TyJ m 132447.0 0.0   1   0.0 0.0 132447.0, 132447.0 -0.12
BXH8/TyJ m 132020.0 0.0   1   0.0 0.0 132020.0, 132020.0 -0.13
BXH9/TyJ m 135150.0 0.0   1   0.0 0.0 135150.0, 135150.0 -0.08
C3H/HeJ m 153101.0 49094.0   2   34714.0 0.321 118387.0, 187815.0 0.22
C57BL/6J m 111638.0 28892.0   5 12921.0 0.259 74012.0, 146479.0 -0.46
C57L/J m 116620.0 0.0   1   0.0 0.0 116620.0, 116620.0 -0.38
C58/J m 104929.0 0.0   1   0.0 0.0 104929.0, 104929.0 -0.57
CAST/EiJ m 238213.0 0.0   1   0.0 0.0 238213.0, 238213.0 1.6
CBA/J m 132210.0 0.0   1   0.0 0.0 132210.0, 132210.0 -0.13
CE/J m 243181.0 0.0   1   0.0 0.0 243181.0, 243181.0 1.68
CXB11/HiAJ m 117922.0 7973.0   2   5638.0 0.0676 112284.0, 123559.0 -0.36
CXB12/HiAJ m 115822.0 37201.0   2   26305.0 0.321 89516.0, 142127.0 -0.39
CXB13/HiAJ m 138825.0 19171.0   3 11068.0 0.138 122361.0, 159871.0 -0.02
CXB1/ByJ m 132590.0 9324.0   3 5383.0 0.0703 121990.0, 139522.0 -0.12
CXB2/ByJ m 143325.0 26074.0   3 15054.0 0.182 114104.0, 164218.0 0.06
CXB3/ByJ m 148274.0 37702.0   2   26660.0 0.254 121615.0, 174934.0 0.14
CXB4/ByJ m 168201.0 25453.0   2   17998.0 0.151 150203.0, 186199.0 0.46
CXB6/ByJ m 101034.0 28920.0   3 16697.0 0.286 73276.0, 130990.0 -0.63
CXB7/ByJ m 153910.0 15594.0   2   11027.0 0.101 142883.0, 164936.0 0.23
CXB8/HiAJ m 132522.0 9024.0   3 5210.0 0.0681 123000.0, 140948.0 -0.12
CXB9/HiAJ m 146622.0 19685.0   3 11365.0 0.134 124632.0, 162599.0 0.11
DBA/2J m 160775.0 27297.0   4 13649.0 0.17 133015.0, 198404.0 0.34
FVB/NJ m 106656.0 0.0   1   0.0 0.0 106656.0, 106656.0 -0.54
I/LnJ m 150541.0 0.0   1   0.0 0.0 150541.0, 150541.0 0.17
KK/HlJ m 111002.0 0.0   1   0.0 0.0 111002.0, 111002.0 -0.47
LG/J m 139406.0 0.0   1   0.0 0.0 139406.0, 139406.0 -0.01
LP/J m 348333.0 0.0   1   0.0 0.0 348333.0, 348333.0 3.4
MA/MyJ m 118954.0 0.0   1   0.0 0.0 118954.0, 118954.0 -0.34
NOD/ShiLtJ m 108995.0 0.0   1   0.0 0.0 108995.0, 108995.0 -0.5
NON/ShiLtJ m 148220.0 0.0   1   0.0 0.0 148220.0, 148220.0 0.14
NZW/LacJ m 594549.0 0.0   1   0.0 0.0 594549.0, 594549.0 7.41
PL/J m 113087.0 0.0   1   0.0 0.0 113087.0, 113087.0 -0.44
RIIIS/J m 136813.0 0.0   1   0.0 0.0 136813.0, 136813.0 -0.05
SEA/GnJ m 109262.0 0.0   1   0.0 0.0 109262.0, 109262.0 -0.5
SJL/J m 83116.0 0.0   1   0.0 0.0 83116.0, 83116.0 -0.93
SM/J m 142698.0 0.0   1   0.0 0.0 142698.0, 142698.0 0.05
SWR/J m 192748.0 0.0   1   0.0 0.0 192748.0, 192748.0 0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 122191.4 18600.8254 159992.8253 84389.9747
AXB19b/PgnJ m 106237.55 18600.8254 144038.9753 68436.1247
AXB24/PgnJ m 114778.9 18600.8254 152580.3253 76977.4747
BALB/cJ m 157507.0 15187.5103 188371.7345 126642.2655
BXA16/PgnJ m 146884.9 18600.8254 184686.3253 109083.4747
BXD19/TyJ m 149361.1 18600.8254 187162.5253 111559.6747
BXD28/TyJ m 121736.6 18600.8254 159538.0253 83935.1747
BXH4/TyJ m 110481.45 18600.8254 148282.8753 72680.0247
C3H/HeJ m 153101.0 18600.8254 190902.4253 115299.5747
C57BL/6J m 111638.2 11764.1949 135545.9205 87730.4795
CXB11/HiAJ m 117921.6 18600.8254 155723.0253 80120.1747
CXB12/HiAJ m 115821.75 18600.8254 153623.1753 78020.3247
CXB13/HiAJ m 138824.7667 15187.5103 169689.5012 107960.0322
CXB1/ByJ m 132589.9667 15187.5103 163454.7012 101725.2322
CXB2/ByJ m 143325.2 15187.5103 174189.9345 112460.4655
CXB3/ByJ m 148274.25 18600.8254 186075.6753 110472.8247
CXB4/ByJ m 168200.95 18600.8254 206002.3753 130399.5247
CXB6/ByJ m 101033.9333 15187.5103 131898.6678 70169.1988
CXB7/ByJ m 153909.55 18600.8254 191710.9753 116108.1247
CXB8/HiAJ m 132521.6 15187.5103 163386.3345 101656.8655
CXB9/HiAJ m 146621.5667 15187.5103 177486.3012 115756.8322
DBA/2J m 160774.875 13152.7698 187504.5192 134045.2308




  GWAS USING LINEAR MIXED MODELS