Phenotype measure:   HMDPpheno7   glucuronate

ID, description, units MPD:50211   glucuronate   liver glucuronate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   104 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver glucuronate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested104 strains
Mean of the strain means765683   None
Median of the strain means692113   None
SD of the strain means± 385117
Coefficient of variation (CV)0.503
Min–max range of strain means191193   –   2559600   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 3406814972955.9 170340748647.795 1.0666 0.4258
Residuals 31 4950747920936.61 159701545836.665


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1399044.0 0.0   1   0.0 0.0 1399044.0, 1399044.0 1.64
A/J m 1478682.0 1353223.0   2   956873.0 0.915 521809.0, 2435555.0 1.85
AKR/J m 1273073.0 0.0   1   0.0 0.0 1273073.0, 1273073.0 1.32
AXB10/PgnJ m 524475.0 0.0   1   0.0 0.0 524475.0, 524475.0 -0.63
AXB12/PgnJ m 367993.0 0.0   1   0.0 0.0 367993.0, 367993.0 -1.03
AXB13/PgnJ m 1031993.0 0.0   1   0.0 0.0 1031993.0, 1031993.0 0.69
AXB15/PgnJ m 1173849.0 0.0   1   0.0 0.0 1173849.0, 1173849.0 1.06
AXB19a/PgnJ m 1220930.0 0.0   1   0.0 0.0 1220930.0, 1220930.0 1.18
AXB19b/PgnJ m 1025020.0 499572.0   2   353250.0 0.487 671769.0, 1378270.0 0.67
AXB19/PgnJ m 1165030.0 0.0   1   0.0 0.0 1165030.0, 1165030.0 1.04
AXB1/PgnJ m 1156702.0 0.0   1   0.0 0.0 1156702.0, 1156702.0 1.02
AXB23/PgnJ m 965921.0 0.0   1   0.0 0.0 965921.0, 965921.0 0.52
AXB24/PgnJ m 251143.0 75889.0   2   53661.0 0.302 197482.0, 304805.0 -1.34
AXB2/PgnJ m 1132901.0 0.0   1   0.0 0.0 1132901.0, 1132901.0 0.95
AXB4/PgnJ m 1031532.0 0.0   1   0.0 0.0 1031532.0, 1031532.0 0.69
AXB5/PgnJ m 837977.0 0.0   1   0.0 0.0 837977.0, 837977.0 0.19
AXB6/PgnJ m 740430.0 0.0   1   0.0 0.0 740430.0, 740430.0 -0.07
AXB8/PgnJ m 191193.0 0.0   1   0.0 0.0 191193.0, 191193.0 -1.49
BALB/cJ m 687174.0 384041.0   3 221726.0 0.559 416237.0, 1126669.0 -0.2
BTBR T+ Itpr3tf/J m 1238693.0 0.0   1   0.0 0.0 1238693.0, 1238693.0 1.23
BUB/BnJ m 948042.0 0.0   1   0.0 0.0 948042.0, 948042.0 0.47
BXA11/PgnJ m 902000.0 0.0   1   0.0 0.0 902000.0, 902000.0 0.35
BXA12/PgnJ m 357321.0 0.0   1   0.0 0.0 357321.0, 357321.0 -1.06
BXA13/PgnJ m 532915.0 0.0   1   0.0 0.0 532915.0, 532915.0 -0.6
BXA14/PgnJ m 697052.0 0.0   1   0.0 0.0 697052.0, 697052.0 -0.18
BXA16/PgnJ m 649014.0 0.0   1   0.0 0.0 649014.0, 649014.0 -0.3
BXA1/PgnJ m 802489.0 0.0   1   0.0 0.0 802489.0, 802489.0 0.1
BXA24/PgnJ m 393036.0 0.0   1   0.0 0.0 393036.0, 393036.0 -0.97
BXA25/PgnJ m 1089380.0 0.0   1   0.0 0.0 1089380.0, 1089380.0 0.84
BXA26/PgnJ m 602379.0 0.0   1   0.0 0.0 602379.0, 602379.0 -0.42
BXA2/PgnJ m 1023596.0 0.0   1   0.0 0.0 1023596.0, 1023596.0 0.67
BXA4/PgnJ m 675108.0 0.0   1   0.0 0.0 675108.0, 675108.0 -0.24
BXA7/PgnJ m 372616.0 0.0   1   0.0 0.0 372616.0, 372616.0 -1.02
BXA8/PgnJ m 758344.0 0.0   1   0.0 0.0 758344.0, 758344.0 -0.02
BXD11/TyJ m 623344.0 0.0   1   0.0 0.0 623344.0, 623344.0 -0.37
BXD12/TyJ m 2414251.0 0.0   1   0.0 0.0 2414251.0, 2414251.0 4.28
BXD13/TyJ m 655726.0 0.0   1   0.0 0.0 655726.0, 655726.0 -0.29
BXD14/TyJ m 677487.0 0.0   1   0.0 0.0 677487.0, 677487.0 -0.23
BXD15/TyJ m 616734.0 0.0   1   0.0 0.0 616734.0, 616734.0 -0.39
BXD18/TyJ m 641087.0 0.0   1   0.0 0.0 641087.0, 641087.0 -0.32
BXD19/TyJ m 761258.0 470217.0   2   332494.0 0.618 428765.0, 1093752.0 -0.01
BXD1/TyJ m 1005124.0 0.0   1   0.0 0.0 1005124.0, 1005124.0 0.62
BXD20/TyJ m 2559600.0 0.0   1   0.0 0.0 2559600.0, 2559600.0 4.66
BXD21/TyJ m 1116572.0 0.0   1   0.0 0.0 1116572.0, 1116572.0 0.91
BXD22/TyJ m 701453.0 0.0   1   0.0 0.0 701453.0, 701453.0 -0.17
BXD24/TyJ m 427228.0 0.0   1   0.0 0.0 427228.0, 427228.0 -0.88
BXD28/TyJ m 983724.0 595038.0   2   420755.0 0.605 562969.0, 1404479.0 0.57
BXD29-Tlr4lps-2J/J m 911270.0 0.0   1   0.0 0.0 911270.0, 911270.0 0.38
BXD2/TyJ m 665756.0 0.0   1   0.0 0.0 665756.0, 665756.0 -0.26
BXD32/TyJ m 602935.0 0.0   1   0.0 0.0 602935.0, 602935.0 -0.42
BXD33/TyJ m 1108824.0 0.0   1   0.0 0.0 1108824.0, 1108824.0 0.89
BXD34/TyJ m 657830.0 0.0   1   0.0 0.0 657830.0, 657830.0 -0.28
BXD36/TyJ m 213977.0 0.0   1   0.0 0.0 213977.0, 213977.0 -1.43
BXD38/TyJ m 283240.0 0.0   1   0.0 0.0 283240.0, 283240.0 -1.25
BXD40/TyJ m 357463.0 0.0   1   0.0 0.0 357463.0, 357463.0 -1.06
BXD42/TyJ m 1031670.0 0.0   1   0.0 0.0 1031670.0, 1031670.0 0.69
BXD5/TyJ m 228636.0 0.0   1   0.0 0.0 228636.0, 228636.0 -1.39
BXD6/TyJ m 631735.0 0.0   1   0.0 0.0 631735.0, 631735.0 -0.35
BXD8/TyJ m 795871.0 0.0   1   0.0 0.0 795871.0, 795871.0 0.08
BXD9/TyJ m 259037.0 0.0   1   0.0 0.0 259037.0, 259037.0 -1.32
BXH10/TyJ m 439010.0 0.0   1   0.0 0.0 439010.0, 439010.0 -0.85
BXH19/TyJ m 602026.0 0.0   1   0.0 0.0 602026.0, 602026.0 -0.42
BXH20/KccJ m 521658.0 0.0   1   0.0 0.0 521658.0, 521658.0 -0.63
BXH22/KccJ m 879130.0 0.0   1   0.0 0.0 879130.0, 879130.0 0.29
BXH2/TyJ m 514140.0 0.0   1   0.0 0.0 514140.0, 514140.0 -0.65
BXH4/TyJ m 735310.0 126423.0   2   89394.0 0.172 645916.0, 824704.0 -0.08
BXH6/TyJ m 637565.0 0.0   1   0.0 0.0 637565.0, 637565.0 -0.33
BXH7/TyJ m 271377.0 0.0   1   0.0 0.0 271377.0, 271377.0 -1.28
BXH8/TyJ m 340060.0 0.0   1   0.0 0.0 340060.0, 340060.0 -1.11
BXH9/TyJ m 593454.0 0.0   1   0.0 0.0 593454.0, 593454.0 -0.45
C3H/HeJ m 385856.0 184720.0   2   130617.0 0.479 255239.0, 516474.0 -0.99
C57BL/6J m 579492.0 149924.0   5 67048.0 0.259 413192.0, 794667.0 -0.48
C57L/J m 704971.0 0.0   1   0.0 0.0 704971.0, 704971.0 -0.16
C58/J m 861948.0 0.0   1   0.0 0.0 861948.0, 861948.0 0.25
CAST/EiJ m 773907.0 0.0   1   0.0 0.0 773907.0, 773907.0 0.02
CBA/J m 416328.0 0.0   1   0.0 0.0 416328.0, 416328.0 -0.91
CE/J m 502459.0 0.0   1   0.0 0.0 502459.0, 502459.0 -0.68
CXB11/HiAJ m 521122.0 407374.0   2   288057.0 0.782 233065.0, 809179.0 -0.64
CXB12/HiAJ m 830075.0 34514.0   2   24405.0 0.0416 805670.0, 854480.0 0.17
CXB13/HiAJ m 686967.0 377906.0   3 218184.0 0.55 431892.0, 1121125.0 -0.2
CXB1/ByJ m 715222.0 119183.0   2   84275.0 0.167 630947.0, 799497.0 -0.13
CXB2/ByJ m 1077027.0 835610.0   2   590866.0 0.776 486161.0, 1667892.0 0.81
CXB3/ByJ m 408763.0 115041.0   2   81346.0 0.281 327417.0, 490110.0 -0.93
CXB4/ByJ m 420504.0 32606.0   2   23056.0 0.0775 397448.0, 443560.0 -0.9
CXB6/ByJ m 445044.0 237480.0   3 137109.0 0.534 237839.0, 704199.0 -0.83
CXB7/ByJ m 803354.0 647479.0   2   457837.0 0.806 345517.0, 1261191.0 0.1
CXB8/HiAJ m 624609.0 81341.0   3 46962.0 0.13 573658.0, 718416.0 -0.37
CXB9/HiAJ m 434828.0 247001.0   3 142606.0 0.568 180302.0, 673544.0 -0.86
DBA/2J m 602103.0 49166.0   4 24583.0 0.0817 548857.0, 653422.0 -0.42
FVB/NJ m 1222184.0 0.0   1   0.0 0.0 1222184.0, 1222184.0 1.19
I/LnJ m 1209134.0 0.0   1   0.0 0.0 1209134.0, 1209134.0 1.15
KK/HlJ m 876790.0 0.0   1   0.0 0.0 876790.0, 876790.0 0.29
LG/J m 880594.0 0.0   1   0.0 0.0 880594.0, 880594.0 0.3
LP/J m 844532.0 0.0   1   0.0 0.0 844532.0, 844532.0 0.2
MA/MyJ m 665268.0 0.0   1   0.0 0.0 665268.0, 665268.0 -0.26
NOD/ShiLtJ m 381219.0 0.0   1   0.0 0.0 381219.0, 381219.0 -1.0
NON/ShiLtJ m 337766.0 0.0   1   0.0 0.0 337766.0, 337766.0 -1.11
NZW/LacJ m 934902.0 0.0   1   0.0 0.0 934902.0, 934902.0 0.44
PL/J m 611495.0 0.0   1   0.0 0.0 611495.0, 611495.0 -0.4
RIIIS/J m 974900.0 0.0   1   0.0 0.0 974900.0, 974900.0 0.54
SEA/GnJ m 842522.0 0.0   1   0.0 0.0 842522.0, 842522.0 0.2
SJL/J m 1117217.0 0.0   1   0.0 0.0 1117217.0, 1117217.0 0.91
SM/J m 1377489.0 0.0   1   0.0 0.0 1377489.0, 1377489.0 1.59
SWR/J m 397873.0 0.0   1   0.0 0.0 397873.0, 397873.0 -0.96


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1478681.75 282578.7906 2055004.9932 902358.5068
AXB19b/PgnJ m 1025019.6 282578.7906 1601342.8432 448696.3568
AXB24/PgnJ m 251143.2 282578.7906 827466.4432 0.0
BALB/cJ m 687174.1667 230724.6164 1157740.1242 216608.2091
BXD19/TyJ m 761258.3 282578.7906 1337581.5432 184935.0568
BXD28/TyJ m 983723.8 282578.7906 1560047.0432 407400.5568
BXH4/TyJ m 735309.75 282578.7906 1311632.9932 158986.5068
C3H/HeJ m 385856.45 282578.7906 962179.6932 0.0
C57BL/6J m 579491.88 178718.5194 943990.7034 214993.0566
CXB11/HiAJ m 521121.85 282578.7906 1097445.0932 0.0
CXB12/HiAJ m 830075.15 282578.7906 1406398.3932 253751.9068
CXB13/HiAJ m 686967.3667 230724.6164 1157533.3242 216401.4091
CXB1/ByJ m 715222.35 282578.7906 1291545.5932 138899.1068
CXB2/ByJ m 1077026.95 282578.7906 1653350.1932 500703.7068
CXB3/ByJ m 408763.3 282578.7906 985086.5432 0.0
CXB4/ByJ m 420503.95 282578.7906 996827.1932 0.0
CXB6/ByJ m 445044.1 230724.6164 915610.0576 0.0
CXB7/ByJ m 803354.1 282578.7906 1379677.3432 227030.8568
CXB8/HiAJ m 624608.6667 230724.6164 1095174.6242 154042.7091
CXB9/HiAJ m 434827.5333 230724.6164 905393.4909 0.0
DBA/2J m 602102.7 199813.3791 1009624.7734 194580.6266




  GWAS USING LINEAR MIXED MODELS