Project measure / variable:   HMDPpheno7   glucose

ID, description, units MPD:50210   glucose   liver glucose (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver glucose (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means103499467   None
Median of the strain means104229556   None
SD of the strain means± 40785489
Coefficient of variation (CV)0.394
Min–max range of strain means20999904   –   205892288   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 6.19775832456292e+16 2951313487887100.0 2.0993 0.0264
Residuals 34 4.77997037698525e+16 1405873640289780.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 67358704.0 0.0   1   0.0 0.0 67358704.0, 67358704.0 -0.89
A/J m 97266120.0 40135471.0   2   28380064.0 0.413 68886056.0, 125646184.0 -0.15
AKR/J m 120877888.0 0.0   1   0.0 0.0 120877888.0, 120877888.0 0.43
AXB10/PgnJ m 112203296.0 0.0   1   0.0 0.0 112203296.0, 112203296.0 0.21
AXB12/PgnJ m 87791856.0 0.0   1   0.0 0.0 87791856.0, 87791856.0 -0.39
AXB13/PgnJ m 87660072.0 0.0   1   0.0 0.0 87660072.0, 87660072.0 -0.39
AXB15/PgnJ m 85174944.0 0.0   1   0.0 0.0 85174944.0, 85174944.0 -0.45
AXB19a/PgnJ m 154877232.0 0.0   1   0.0 0.0 154877232.0, 154877232.0 1.26
AXB19b/PgnJ m 130410604.0 24699981.0   2   17465524.0 0.189 112945080.0, 147876128.0 0.66
AXB19/PgnJ m 135471632.0 0.0   1   0.0 0.0 135471632.0, 135471632.0 0.78
AXB1/PgnJ m 22436918.0 0.0   1   0.0 0.0 22436918.0, 22436918.0 -1.99
AXB23/PgnJ m 101980392.0 0.0   1   0.0 0.0 101980392.0, 101980392.0 -0.04
AXB24/PgnJ m 138439320.0 90004613.0   2   63642872.0 0.65 74796448.0, 202082192.0 0.86
AXB2/PgnJ m 31789704.0 0.0   1   0.0 0.0 31789704.0, 31789704.0 -1.76
AXB4/PgnJ m 98221600.0 0.0   1   0.0 0.0 98221600.0, 98221600.0 -0.13
AXB5/PgnJ m 112071032.0 0.0   1   0.0 0.0 112071032.0, 112071032.0 0.21
AXB6/PgnJ m 117318944.0 0.0   1   0.0 0.0 117318944.0, 117318944.0 0.34
AXB8/PgnJ m 72513984.0 0.0   1   0.0 0.0 72513984.0, 72513984.0 -0.76
BALB/cJ m 80773410.0 44082133.0   3 25450831.0 0.546 29953238.0, 108676896.0 -0.56
BTBR T+ Itpr3tf/J m 169103584.0 0.0   1   0.0 0.0 169103584.0, 169103584.0 1.61
BUB/BnJ m 54251136.0 0.0   1   0.0 0.0 54251136.0, 54251136.0 -1.21
BXA11/PgnJ m 84306504.0 0.0   1   0.0 0.0 84306504.0, 84306504.0 -0.47
BXA12/PgnJ m 34339560.0 0.0   1   0.0 0.0 34339560.0, 34339560.0 -1.7
BXA13/PgnJ m 88323624.0 0.0   1   0.0 0.0 88323624.0, 88323624.0 -0.37
BXA14/PgnJ m 171770912.0 0.0   1   0.0 0.0 171770912.0, 171770912.0 1.67
BXA16/PgnJ m 128694244.0 40979174.0   2   28976652.0 0.318 99717592.0, 157670896.0 0.62
BXA1/PgnJ m 140340368.0 0.0   1   0.0 0.0 140340368.0, 140340368.0 0.9
BXA24/PgnJ m 158724592.0 0.0   1   0.0 0.0 158724592.0, 158724592.0 1.35
BXA25/PgnJ m 87779912.0 0.0   1   0.0 0.0 87779912.0, 87779912.0 -0.39
BXA26/PgnJ m 100555824.0 0.0   1   0.0 0.0 100555824.0, 100555824.0 -0.07
BXA2/PgnJ m 169656304.0 0.0   1   0.0 0.0 169656304.0, 169656304.0 1.62
BXA4/PgnJ m 58220796.0 0.0   1   0.0 0.0 58220796.0, 58220796.0 -1.11
BXA7/PgnJ m 119423232.0 0.0   1   0.0 0.0 119423232.0, 119423232.0 0.39
BXA8/PgnJ m 99590768.0 0.0   1   0.0 0.0 99590768.0, 99590768.0 -0.1
BXD11/TyJ m 31853148.0 0.0   1   0.0 0.0 31853148.0, 31853148.0 -1.76
BXD12/TyJ m 57795756.0 0.0   1   0.0 0.0 57795756.0, 57795756.0 -1.12
BXD13/TyJ m 141440960.0 0.0   1   0.0 0.0 141440960.0, 141440960.0 0.93
BXD14/TyJ m 153527264.0 0.0   1   0.0 0.0 153527264.0, 153527264.0 1.23
BXD15/TyJ m 119188144.0 0.0   1   0.0 0.0 119188144.0, 119188144.0 0.38
BXD18/TyJ m 80794296.0 0.0   1   0.0 0.0 80794296.0, 80794296.0 -0.56
BXD19/TyJ m 112112144.0 1195361.0   2   845248.0 0.0107 111266896.0, 112957392.0 0.21
BXD1/TyJ m 146728192.0 0.0   1   0.0 0.0 146728192.0, 146728192.0 1.06
BXD20/TyJ m 113109264.0 0.0   1   0.0 0.0 113109264.0, 113109264.0 0.24
BXD21/TyJ m 114487832.0 0.0   1   0.0 0.0 114487832.0, 114487832.0 0.27
BXD22/TyJ m 129825400.0 0.0   1   0.0 0.0 129825400.0, 129825400.0 0.65
BXD24/TyJ m 58831528.0 0.0   1   0.0 0.0 58831528.0, 58831528.0 -1.1
BXD24/TyJ-Cep290rd16/J m 81528112.0 0.0   1   0.0 0.0 81528112.0, 81528112.0 -0.54
BXD28/TyJ m 144824800.0 24580095.0   2   17380752.0 0.17 127444048.0, 162205552.0 1.01
BXD29-Tlr4lps-2J/J m 84124592.0 0.0   1   0.0 0.0 84124592.0, 84124592.0 -0.48
BXD2/TyJ m 113413784.0 0.0   1   0.0 0.0 113413784.0, 113413784.0 0.24
BXD32/TyJ m 104713120.0 0.0   1   0.0 0.0 104713120.0, 104713120.0 0.03
BXD33/TyJ m 105204504.0 0.0   1   0.0 0.0 105204504.0, 105204504.0 0.04
BXD34/TyJ m 40579468.0 0.0   1   0.0 0.0 40579468.0, 40579468.0 -1.54
BXD36/TyJ m 89126096.0 0.0   1   0.0 0.0 89126096.0, 89126096.0 -0.35
BXD38/TyJ m 20999904.0 0.0   1   0.0 0.0 20999904.0, 20999904.0 -2.02
BXD39/TyJ m 160298832.0 0.0   1   0.0 0.0 160298832.0, 160298832.0 1.39
BXD40/TyJ m 40827044.0 0.0   1   0.0 0.0 40827044.0, 40827044.0 -1.54
BXD42/TyJ m 135064592.0 0.0   1   0.0 0.0 135064592.0, 135064592.0 0.77
BXD5/TyJ m 153918448.0 0.0   1   0.0 0.0 153918448.0, 153918448.0 1.24
BXD6/TyJ m 136502160.0 0.0   1   0.0 0.0 136502160.0, 136502160.0 0.81
BXD8/TyJ m 90851384.0 0.0   1   0.0 0.0 90851384.0, 90851384.0 -0.31
BXD9/TyJ m 132537016.0 0.0   1   0.0 0.0 132537016.0, 132537016.0 0.71
BXH10/TyJ m 68357400.0 0.0   1   0.0 0.0 68357400.0, 68357400.0 -0.86
BXH19/TyJ m 152088992.0 0.0   1   0.0 0.0 152088992.0, 152088992.0 1.19
BXH20/KccJ m 134773136.0 0.0   1   0.0 0.0 134773136.0, 134773136.0 0.77
BXH22/KccJ m 103745992.0 0.0   1   0.0 0.0 103745992.0, 103745992.0 0.01
BXH2/TyJ m 135300000.0 0.0   1   0.0 0.0 135300000.0, 135300000.0 0.78
BXH4/TyJ m 170142184.0 10715632.0   2   7577096.0 0.063 162565088.0, 177719280.0 1.63
BXH6/TyJ m 181082672.0 0.0   1   0.0 0.0 181082672.0, 181082672.0 1.9
BXH7/TyJ m 128323968.0 0.0   1   0.0 0.0 128323968.0, 128323968.0 0.61
BXH8/TyJ m 205892288.0 0.0   1   0.0 0.0 205892288.0, 205892288.0 2.51
BXH9/TyJ m 108134120.0 0.0   1   0.0 0.0 108134120.0, 108134120.0 0.11
C3H/HeJ m 82166692.0 12609960.0   2   8916588.0 0.153 73250104.0, 91083280.0 -0.52
C57BL/6J m 61454079.0 33882227.0   5 15152593.0 0.551 21733824.0, 99380528.0 -1.03
C57L/J m 27952274.0 0.0   1   0.0 0.0 27952274.0, 27952274.0 -1.85
C58/J m 139873200.0 0.0   1   0.0 0.0 139873200.0, 139873200.0 0.89
CAST/EiJ m 108053880.0 0.0   1   0.0 0.0 108053880.0, 108053880.0 0.11
CBA/J m 108901280.0 0.0   1   0.0 0.0 108901280.0, 108901280.0 0.13
CE/J m 54373232.0 0.0   1   0.0 0.0 54373232.0, 54373232.0 -1.2
CXB11/HiAJ m 81503772.0 25508029.0   2   18036900.0 0.313 63466872.0, 99540672.0 -0.54
CXB12/HiAJ m 100239464.0 24123338.0   2   17057776.0 0.241 83181688.0, 117297240.0 -0.08
CXB13/HiAJ m 105914592.0 49713266.0   3 28701968.0 0.469 53359304.0, 152188864.0 0.06
CXB1/ByJ m 125846293.0 29895171.0   3 17259985.0 0.238 91402240.0, 145049888.0 0.55
CXB2/ByJ m 79494563.0 66096455.0   3 38160806.0 0.831 31346680.0, 154852784.0 -0.59
CXB3/ByJ m 136023272.0 2262300.0   2   1599688.0 0.0166 134423584.0, 137622960.0 0.8
CXB4/ByJ m 166471104.0 6122187.0   2   4329040.0 0.0368 162142064.0, 170800144.0 1.54
CXB6/ByJ m 66519124.0 40249958.0   3 23238324.0 0.605 39417144.0, 112768296.0 -0.91
CXB7/ByJ m 158704896.0 8564523.0   2   6056032.0 0.054 152648864.0, 164760928.0 1.35
CXB8/HiAJ m 155719712.0 22577584.0   3 13035174.0 0.145 137496048.0, 180976848.0 1.28
CXB9/HiAJ m 97054037.0 33757245.0   3 19489755.0 0.348 61008272.0, 127925216.0 -0.16
DBA/2J m 83774420.0 32071252.0   4 16035626.0 0.383 50414632.0, 115102704.0 -0.48
FVB/NJ m 33819452.0 0.0   1   0.0 0.0 33819452.0, 33819452.0 -1.71
I/LnJ m 102044880.0 0.0   1   0.0 0.0 102044880.0, 102044880.0 -0.04
KK/HlJ m 62474948.0 0.0   1   0.0 0.0 62474948.0, 62474948.0 -1.01
LG/J m 106539440.0 0.0   1   0.0 0.0 106539440.0, 106539440.0 0.07
LP/J m 131554248.0 0.0   1   0.0 0.0 131554248.0, 131554248.0 0.69
MA/MyJ m 43131436.0 0.0   1   0.0 0.0 43131436.0, 43131436.0 -1.48
NOD/ShiLtJ m 43518336.0 0.0   1   0.0 0.0 43518336.0, 43518336.0 -1.47
NON/ShiLtJ m 72589344.0 0.0   1   0.0 0.0 72589344.0, 72589344.0 -0.76
NZW/LacJ m 161329440.0 0.0   1   0.0 0.0 161329440.0, 161329440.0 1.42
PL/J m 61904432.0 0.0   1   0.0 0.0 61904432.0, 61904432.0 -1.02
RIIIS/J m 103609848.0 0.0   1   0.0 0.0 103609848.0, 103609848.0 0.0
SEA/GnJ m 75949416.0 0.0   1   0.0 0.0 75949416.0, 75949416.0 -0.68
SJL/J m 118087552.0 0.0   1   0.0 0.0 118087552.0, 118087552.0 0.36
SM/J m 24982010.0 0.0   1   0.0 0.0 24982010.0, 24982010.0 -1.93
SWR/J m 87601264.0 0.0   1   0.0 0.0 87601264.0, 87601264.0 -0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 97266120.0 26512955.7037 151146928.6546 43385311.3454
AXB19b/PgnJ m 130410604.0 26512955.7037 184291412.6546 76529795.3454
AXB24/PgnJ m 138439320.0 26512955.7037 192320128.6546 84558511.3454
BALB/cJ m 80773410.0 21647737.6823 124766906.0441 36779913.9559
BXA16/PgnJ m 128694244.0 26512955.7037 182575052.6546 74813435.3454
BXD19/TyJ m 112112144.0 26512955.7037 165992952.6546 58231335.3454
BXD28/TyJ m 144824800.0 26512955.7037 198705608.6546 90943991.3454
BXH4/TyJ m 170142184.0 26512955.7037 224022992.6546 116261375.3454
C3H/HeJ m 82166692.0 26512955.7037 136047500.6546 28285883.3454
C57BL/6J m 61454079.2 16768265.5054 95531294.704 27376863.696
CXB11/HiAJ m 81503772.0 26512955.7037 135384580.6546 27622963.3454
CXB12/HiAJ m 100239464.0 26512955.7037 154120272.6546 46358655.3454
CXB13/HiAJ m 105914592.0 21647737.6823 149908088.0441 61921095.9559
CXB1/ByJ m 125846293.3333 21647737.6823 169839789.3774 81852797.2893
CXB2/ByJ m 79494562.6667 21647737.6823 123488058.7107 35501066.6226
CXB3/ByJ m 136023272.0 26512955.7037 189904080.6546 82142463.3454
CXB4/ByJ m 166471104.0 26512955.7037 220351912.6546 112590295.3454
CXB6/ByJ m 66519124.0 21647737.6823 110512620.0441 22525627.9559
CXB7/ByJ m 158704896.0 26512955.7037 212585704.6546 104824087.3454
CXB8/HiAJ m 155719712.0 21647737.6823 199713208.0441 111726215.9559
CXB9/HiAJ m 97054037.3333 21647737.6823 141047533.3774 53060541.2893
DBA/2J m 83774420.0 18747490.7674 121873905.1755 45674934.8245




  GWAS USING LINEAR MIXED MODELS