Project measure / variable:   HMDPpheno7   anhydroglucitol

ID, description, units MPD:50209   anhydroglucitol   liver 1,5-anhydroglucitol (1,5-AG) (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver 1,5-anhydroglucitol (1,5-AG) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means274841   None
Median of the strain means266400   None
SD of the strain means± 98667
Coefficient of variation (CV)0.359
Min–max range of strain means64897   –   764792   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 19 419448513539.034 22076237554.686 2.3947 0.0142
Residuals 32 295000933746.772 9218779179.5866


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 248776.0 0.0   1   0.0 0.0 248776.0, 248776.0 -0.26
A/J m 266400.0 103945.0   2   73500.0 0.39 192900.0, 339901.0 -0.09
AKR/J m 265708.0 0.0   1   0.0 0.0 265708.0, 265708.0 -0.09
AXB10/PgnJ m 268191.0 0.0   1   0.0 0.0 268191.0, 268191.0 -0.07
AXB12/PgnJ m 339145.0 0.0   1   0.0 0.0 339145.0, 339145.0 0.65
AXB13/PgnJ m 336606.0 0.0   1   0.0 0.0 336606.0, 336606.0 0.63
AXB15/PgnJ m 203431.0 0.0   1   0.0 0.0 203431.0, 203431.0 -0.72
AXB19a/PgnJ m 248234.0 0.0   1   0.0 0.0 248234.0, 248234.0 -0.27
AXB19b/PgnJ m 136259.0 0.0   1   0.0 0.0 136259.0, 136259.0 -1.4
AXB19/PgnJ m 173126.0 0.0   1   0.0 0.0 173126.0, 173126.0 -1.03
AXB1/PgnJ m 295834.0 0.0   1   0.0 0.0 295834.0, 295834.0 0.21
AXB23/PgnJ m 274403.0 0.0   1   0.0 0.0 274403.0, 274403.0 0.0
AXB24/PgnJ m 218291.0 72216.0   2   51064.0 0.331 167227.0, 269355.0 -0.57
AXB2/PgnJ m 235993.0 0.0   1   0.0 0.0 235993.0, 235993.0 -0.39
AXB4/PgnJ m 229533.0 0.0   1   0.0 0.0 229533.0, 229533.0 -0.46
AXB5/PgnJ m 249801.0 0.0   1   0.0 0.0 249801.0, 249801.0 -0.25
AXB6/PgnJ m 295082.0 0.0   1   0.0 0.0 295082.0, 295082.0 0.21
AXB8/PgnJ m 318742.0 0.0   1   0.0 0.0 318742.0, 318742.0 0.44
BALB/cJ m 160673.0 38314.0   3 22121.0 0.238 118301.0, 192879.0 -1.16
BTBR T+ Itpr3tf/J m 196436.0 0.0   1   0.0 0.0 196436.0, 196436.0 -0.79
BUB/BnJ m 326167.0 0.0   1   0.0 0.0 326167.0, 326167.0 0.52
BXA11/PgnJ m 84872.0 0.0   1   0.0 0.0 84872.0, 84872.0 -1.93
BXA12/PgnJ m 234780.0 0.0   1   0.0 0.0 234780.0, 234780.0 -0.41
BXA13/PgnJ m 252065.0 0.0   1   0.0 0.0 252065.0, 252065.0 -0.23
BXA14/PgnJ m 298368.0 0.0   1   0.0 0.0 298368.0, 298368.0 0.24
BXA16/PgnJ m 233251.0 27747.0   2   19620.0 0.119 213631.0, 252871.0 -0.42
BXA1/PgnJ m 265845.0 0.0   1   0.0 0.0 265845.0, 265845.0 -0.09
BXA24/PgnJ m 239965.0 0.0   1   0.0 0.0 239965.0, 239965.0 -0.35
BXA25/PgnJ m 253284.0 0.0   1   0.0 0.0 253284.0, 253284.0 -0.22
BXA26/PgnJ m 388823.0 0.0   1   0.0 0.0 388823.0, 388823.0 1.16
BXA2/PgnJ m 394710.0 0.0   1   0.0 0.0 394710.0, 394710.0 1.21
BXA4/PgnJ m 326116.0 0.0   1   0.0 0.0 326116.0, 326116.0 0.52
BXA7/PgnJ m 314056.0 0.0   1   0.0 0.0 314056.0, 314056.0 0.4
BXA8/PgnJ m 103136.0 0.0   1   0.0 0.0 103136.0, 103136.0 -1.74
BXD11/TyJ m 307317.0 0.0   1   0.0 0.0 307317.0, 307317.0 0.33
BXD12/TyJ m 271364.0 0.0   1   0.0 0.0 271364.0, 271364.0 -0.04
BXD13/TyJ m 333690.0 0.0   1   0.0 0.0 333690.0, 333690.0 0.6
BXD14/TyJ m 245044.0 0.0   1   0.0 0.0 245044.0, 245044.0 -0.3
BXD15/TyJ m 392253.0 0.0   1   0.0 0.0 392253.0, 392253.0 1.19
BXD19/TyJ m 282536.0 99069.0   2   70052.0 0.351 212484.0, 352589.0 0.08
BXD1/TyJ m 350824.0 0.0   1   0.0 0.0 350824.0, 350824.0 0.77
BXD20/TyJ m 567940.0 0.0   1   0.0 0.0 567940.0, 567940.0 2.97
BXD21/TyJ m 206458.0 0.0   1   0.0 0.0 206458.0, 206458.0 -0.69
BXD22/TyJ m 352215.0 0.0   1   0.0 0.0 352215.0, 352215.0 0.78
BXD24/TyJ m 353161.0 0.0   1   0.0 0.0 353161.0, 353161.0 0.79
BXD24/TyJ-Cep290rd16/J m 292647.0 0.0   1   0.0 0.0 292647.0, 292647.0 0.18
BXD28/TyJ m 262360.0 6587.0   2   4658.0 0.0251 257702.0, 267018.0 -0.13
BXD29-Tlr4lps-2J/J m 272288.0 0.0   1   0.0 0.0 272288.0, 272288.0 -0.03
BXD2/TyJ m 100691.0 0.0   1   0.0 0.0 100691.0, 100691.0 -1.77
BXD32/TyJ m 271486.0 0.0   1   0.0 0.0 271486.0, 271486.0 -0.03
BXD33/TyJ m 271500.0 0.0   1   0.0 0.0 271500.0, 271500.0 -0.03
BXD34/TyJ m 390787.0 0.0   1   0.0 0.0 390787.0, 390787.0 1.18
BXD36/TyJ m 255557.0 0.0   1   0.0 0.0 255557.0, 255557.0 -0.2
BXD38/TyJ m 142890.0 0.0   1   0.0 0.0 142890.0, 142890.0 -1.34
BXD39/TyJ m 364814.0 0.0   1   0.0 0.0 364814.0, 364814.0 0.91
BXD40/TyJ m 261544.0 0.0   1   0.0 0.0 261544.0, 261544.0 -0.13
BXD42/TyJ m 194321.0 0.0   1   0.0 0.0 194321.0, 194321.0 -0.82
BXD5/TyJ m 328718.0 0.0   1   0.0 0.0 328718.0, 328718.0 0.55
BXD6/TyJ m 243182.0 0.0   1   0.0 0.0 243182.0, 243182.0 -0.32
BXD8/TyJ m 282729.0 0.0   1   0.0 0.0 282729.0, 282729.0 0.08
BXD9/TyJ m 264589.0 0.0   1   0.0 0.0 264589.0, 264589.0 -0.1
BXH10/TyJ m 209854.0 0.0   1   0.0 0.0 209854.0, 209854.0 -0.66
BXH19/TyJ m 107879.0 0.0   1   0.0 0.0 107879.0, 107879.0 -1.69
BXH20/KccJ m 212475.0 0.0   1   0.0 0.0 212475.0, 212475.0 -0.63
BXH22/KccJ m 328399.0 0.0   1   0.0 0.0 328399.0, 328399.0 0.54
BXH2/TyJ m 180777.0 0.0   1   0.0 0.0 180777.0, 180777.0 -0.95
BXH4/TyJ m 191661.0 0.0   1   0.0 0.0 191661.0, 191661.0 -0.84
BXH6/TyJ m 344060.0 0.0   1   0.0 0.0 344060.0, 344060.0 0.7
BXH7/TyJ m 262536.0 0.0   1   0.0 0.0 262536.0, 262536.0 -0.12
BXH8/TyJ m 206210.0 0.0   1   0.0 0.0 206210.0, 206210.0 -0.7
BXH9/TyJ m 274515.0 0.0   1   0.0 0.0 274515.0, 274515.0 0.0
C3H/HeJ m 248244.0 15461.0   2   10932.0 0.0623 237312.0, 259176.0 -0.27
C57BL/6J m 212623.0 37960.0   5 16976.0 0.179 157306.0, 260192.0 -0.63
C57L/J m 268462.0 0.0   1   0.0 0.0 268462.0, 268462.0 -0.06
C58/J m 552890.0 0.0   1   0.0 0.0 552890.0, 552890.0 2.82
CAST/EiJ m 134987.0 0.0   1   0.0 0.0 134987.0, 134987.0 -1.42
CBA/J m 212532.0 0.0   1   0.0 0.0 212532.0, 212532.0 -0.63
CE/J m 262753.0 0.0   1   0.0 0.0 262753.0, 262753.0 -0.12
CXB11/HiAJ m 340780.0 23650.0   2   16723.0 0.0694 324056.0, 357503.0 0.67
CXB12/HiAJ m 290326.0 36268.0   2   25645.0 0.125 264681.0, 315971.0 0.16
CXB13/HiAJ m 498641.0 195010.0   3 112589.0 0.391 348412.0, 719022.0 2.27
CXB1/ByJ m 334007.0 102574.0   3 59221.0 0.307 216760.0, 407164.0 0.6
CXB2/ByJ m 223533.0 88401.0   3 51038.0 0.395 121487.0, 276702.0 -0.52
CXB3/ByJ m 276838.0 2415.0   2   1708.0 0.00872 275130.0, 278545.0 0.02
CXB4/ByJ m 361949.0 10373.0   2   7335.0 0.0287 354614.0, 369284.0 0.88
CXB6/ByJ m 281654.0 75550.0   3 43619.0 0.268 229929.0, 368354.0 0.07
CXB7/ByJ m 314421.0 49387.0   2   34922.0 0.157 279499.0, 349343.0 0.4
CXB8/HiAJ m 348207.0 39899.0   3 23036.0 0.115 307498.0, 387244.0 0.74
CXB9/HiAJ m 340993.0 115009.0   3 66400.0 0.337 260646.0, 472737.0 0.67
DBA/2J m 476724.0 183670.0   4 91835.0 0.385 258469.0, 674234.0 2.05
FVB/NJ m 231207.0 0.0   1   0.0 0.0 231207.0, 231207.0 -0.44
I/LnJ m 764792.0 0.0   1   0.0 0.0 764792.0, 764792.0 4.97
KK/HlJ m 64897.0 0.0   1   0.0 0.0 64897.0, 64897.0 -2.13
LG/J m 274398.0 0.0   1   0.0 0.0 274398.0, 274398.0 0.0
LP/J m 291561.0 0.0   1   0.0 0.0 291561.0, 291561.0 0.17
MA/MyJ m 354825.0 0.0   1   0.0 0.0 354825.0, 354825.0 0.81
NOD/ShiLtJ m 182880.0 0.0   1   0.0 0.0 182880.0, 182880.0 -0.93
NON/ShiLtJ m 207622.0 0.0   1   0.0 0.0 207622.0, 207622.0 -0.68
NZW/LacJ m 242048.0 0.0   1   0.0 0.0 242048.0, 242048.0 -0.33
PL/J m 244322.0 0.0   1   0.0 0.0 244322.0, 244322.0 -0.31
RIIIS/J m 196089.0 0.0   1   0.0 0.0 196089.0, 196089.0 -0.8
SEA/GnJ m 329286.0 0.0   1   0.0 0.0 329286.0, 329286.0 0.55
SJL/J m 167652.0 0.0   1   0.0 0.0 167652.0, 167652.0 -1.09
SM/J m 269447.0 0.0   1   0.0 0.0 269447.0, 269447.0 -0.05
SWR/J m 199345.0 0.0   1   0.0 0.0 199345.0, 199345.0 -0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 266400.3 67892.4855 404692.7675 128107.8325
AXB24/PgnJ m 218291.15 67892.4855 356583.6175 79998.6825
BALB/cJ m 160672.6 55433.9823 273587.9269 47757.2731
BXA16/PgnJ m 233250.85 67892.4855 371543.3175 94958.3825
BXD19/TyJ m 282536.5 67892.4855 420828.9675 144244.0325
BXD28/TyJ m 262360.05 67892.4855 400652.5175 124067.5825
C3H/HeJ m 248243.85 67892.4855 386536.3175 109951.3825
C57BL/6J m 212622.9 42938.978 300086.7361 125159.0639
CXB11/HiAJ m 340779.5 67892.4855 479071.9675 202487.0325
CXB12/HiAJ m 290325.9 67892.4855 428618.3675 152033.4325
CXB13/HiAJ m 498640.9333 55433.9823 611556.2602 385725.6064
CXB1/ByJ m 334006.9333 55433.9823 446922.2602 221091.6064
CXB2/ByJ m 223533.1667 55433.9823 336448.4936 110617.8398
CXB3/ByJ m 276837.5 67892.4855 415129.9675 138545.0325
CXB4/ByJ m 361948.95 67892.4855 500241.4175 223656.4825
CXB6/ByJ m 281654.4667 55433.9823 394569.7936 168739.1398
CXB7/ByJ m 314420.7 67892.4855 452713.1675 176128.2325
CXB8/HiAJ m 348207.1333 55433.9823 461122.4602 235291.8064
CXB9/HiAJ m 340992.6333 55433.9823 453907.9602 228077.3064
DBA/2J m 476724.175 48007.2369 574511.7166 378936.6334




  GWAS USING LINEAR MIXED MODELS