Phenotype measure:   HMDPpheno7   mannose

ID, description, units MPD:50206   mannose   liver mannose (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver mannose (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means18767802   None
Median of the strain means16994723   None
SD of the strain means± 7345032
Coefficient of variation (CV)0.391
Min–max range of strain means7087472   –   41258752   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1832949765946940.0 87283322187949.6 3.4677 0.0006
Residuals 34 855788670954487.0 25170255028073.2


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 12007572.0 0.0   1   0.0 0.0 12007572.0, 12007572.0 -0.92
A/J m 14852240.0 2782773.0   2   1967718.0 0.187 12884522.0, 16819958.0 -0.53
AKR/J m 24179028.0 0.0   1   0.0 0.0 24179028.0, 24179028.0 0.74
AXB10/PgnJ m 15259508.0 0.0   1   0.0 0.0 15259508.0, 15259508.0 -0.48
AXB12/PgnJ m 12821578.0 0.0   1   0.0 0.0 12821578.0, 12821578.0 -0.81
AXB13/PgnJ m 13966720.0 0.0   1   0.0 0.0 13966720.0, 13966720.0 -0.65
AXB15/PgnJ m 14321267.0 0.0   1   0.0 0.0 14321267.0, 14321267.0 -0.61
AXB19a/PgnJ m 22815996.0 0.0   1   0.0 0.0 22815996.0, 22815996.0 0.55
AXB19b/PgnJ m 27288797.0 1456361.0   2   1029803.0 0.0534 26258994.0, 28318600.0 1.16
AXB19/PgnJ m 28933696.0 0.0   1   0.0 0.0 28933696.0, 28933696.0 1.38
AXB1/PgnJ m 14209188.0 0.0   1   0.0 0.0 14209188.0, 14209188.0 -0.62
AXB23/PgnJ m 21031314.0 0.0   1   0.0 0.0 21031314.0, 21031314.0 0.31
AXB24/PgnJ m 20167550.0 17185407.0   2   12151918.0 0.852 8015632.0, 32319468.0 0.19
AXB2/PgnJ m 9516049.0 0.0   1   0.0 0.0 9516049.0, 9516049.0 -1.26
AXB4/PgnJ m 18489558.0 0.0   1   0.0 0.0 18489558.0, 18489558.0 -0.04
AXB5/PgnJ m 16483843.0 0.0   1   0.0 0.0 16483843.0, 16483843.0 -0.31
AXB6/PgnJ m 24491060.0 0.0   1   0.0 0.0 24491060.0, 24491060.0 0.78
AXB8/PgnJ m 11099799.0 0.0   1   0.0 0.0 11099799.0, 11099799.0 -1.04
BALB/cJ m 17543621.0 3962857.0   3 2287956.0 0.226 13009362.0, 20344236.0 -0.17
BTBR T+ Itpr3tf/J m 32824194.0 0.0   1   0.0 0.0 32824194.0, 32824194.0 1.91
BUB/BnJ m 10865137.0 0.0   1   0.0 0.0 10865137.0, 10865137.0 -1.08
BXA11/PgnJ m 15681238.0 0.0   1   0.0 0.0 15681238.0, 15681238.0 -0.42
BXA12/PgnJ m 7087472.0 0.0   1   0.0 0.0 7087472.0, 7087472.0 -1.59
BXA13/PgnJ m 14760526.0 0.0   1   0.0 0.0 14760526.0, 14760526.0 -0.55
BXA14/PgnJ m 41258752.0 0.0   1   0.0 0.0 41258752.0, 41258752.0 3.06
BXA16/PgnJ m 20149075.0 7570799.0   2   5353363.0 0.376 14795712.0, 25502438.0 0.19
BXA1/PgnJ m 19255438.0 0.0   1   0.0 0.0 19255438.0, 19255438.0 0.07
BXA24/PgnJ m 22387832.0 0.0   1   0.0 0.0 22387832.0, 22387832.0 0.49
BXA25/PgnJ m 14037793.0 0.0   1   0.0 0.0 14037793.0, 14037793.0 -0.64
BXA26/PgnJ m 15362333.0 0.0   1   0.0 0.0 15362333.0, 15362333.0 -0.46
BXA2/PgnJ m 31132564.0 0.0   1   0.0 0.0 31132564.0, 31132564.0 1.68
BXA4/PgnJ m 12419145.0 0.0   1   0.0 0.0 12419145.0, 12419145.0 -0.86
BXA7/PgnJ m 22582684.0 0.0   1   0.0 0.0 22582684.0, 22582684.0 0.52
BXA8/PgnJ m 15807766.0 0.0   1   0.0 0.0 15807766.0, 15807766.0 -0.4
BXD11/TyJ m 9483063.0 0.0   1   0.0 0.0 9483063.0, 9483063.0 -1.26
BXD12/TyJ m 21057444.0 0.0   1   0.0 0.0 21057444.0, 21057444.0 0.31
BXD13/TyJ m 23261216.0 0.0   1   0.0 0.0 23261216.0, 23261216.0 0.61
BXD14/TyJ m 27785166.0 0.0   1   0.0 0.0 27785166.0, 27785166.0 1.23
BXD15/TyJ m 22263088.0 0.0   1   0.0 0.0 22263088.0, 22263088.0 0.48
BXD18/TyJ m 16194196.0 0.0   1   0.0 0.0 16194196.0, 16194196.0 -0.35
BXD19/TyJ m 19651399.0 1048259.0   2   741231.0 0.0533 18910168.0, 20392630.0 0.12
BXD1/TyJ m 28512684.0 0.0   1   0.0 0.0 28512684.0, 28512684.0 1.33
BXD20/TyJ m 32560246.0 0.0   1   0.0 0.0 32560246.0, 32560246.0 1.88
BXD21/TyJ m 18903476.0 0.0   1   0.0 0.0 18903476.0, 18903476.0 0.02
BXD22/TyJ m 34461172.0 0.0   1   0.0 0.0 34461172.0, 34461172.0 2.14
BXD24/TyJ m 9934040.0 0.0   1   0.0 0.0 9934040.0, 9934040.0 -1.2
BXD24/TyJ-Cep290rd16/J m 14200700.0 0.0   1   0.0 0.0 14200700.0, 14200700.0 -0.62
BXD28/TyJ m 26124800.0 9701454.0   2   6859964.0 0.371 19264836.0, 32984764.0 1.0
BXD29-Tlr4lps-2J/J m 16997044.0 0.0   1   0.0 0.0 16997044.0, 16997044.0 -0.24
BXD2/TyJ m 23610252.0 0.0   1   0.0 0.0 23610252.0, 23610252.0 0.66
BXD32/TyJ m 16048643.0 0.0   1   0.0 0.0 16048643.0, 16048643.0 -0.37
BXD33/TyJ m 17538966.0 0.0   1   0.0 0.0 17538966.0, 17538966.0 -0.17
BXD34/TyJ m 10520967.0 0.0   1   0.0 0.0 10520967.0, 10520967.0 -1.12
BXD36/TyJ m 16158418.0 0.0   1   0.0 0.0 16158418.0, 16158418.0 -0.36
BXD38/TyJ m 7908052.0 0.0   1   0.0 0.0 7908052.0, 7908052.0 -1.48
BXD39/TyJ m 19465442.0 0.0   1   0.0 0.0 19465442.0, 19465442.0 0.09
BXD40/TyJ m 11289640.0 0.0   1   0.0 0.0 11289640.0, 11289640.0 -1.02
BXD42/TyJ m 26154906.0 0.0   1   0.0 0.0 26154906.0, 26154906.0 1.01
BXD5/TyJ m 22352632.0 0.0   1   0.0 0.0 22352632.0, 22352632.0 0.49
BXD6/TyJ m 29091664.0 0.0   1   0.0 0.0 29091664.0, 29091664.0 1.41
BXD8/TyJ m 14340713.0 0.0   1   0.0 0.0 14340713.0, 14340713.0 -0.6
BXD9/TyJ m 21342310.0 0.0   1   0.0 0.0 21342310.0, 21342310.0 0.35
BXH10/TyJ m 11532589.0 0.0   1   0.0 0.0 11532589.0, 11532589.0 -0.99
BXH19/TyJ m 35432812.0 0.0   1   0.0 0.0 35432812.0, 35432812.0 2.27
BXH20/KccJ m 30055756.0 0.0   1   0.0 0.0 30055756.0, 30055756.0 1.54
BXH22/KccJ m 20518522.0 0.0   1   0.0 0.0 20518522.0, 20518522.0 0.24
BXH2/TyJ m 29429464.0 0.0   1   0.0 0.0 29429464.0, 29429464.0 1.45
BXH4/TyJ m 36204546.0 3376274.0   2   2387386.0 0.0933 33817160.0, 38591932.0 2.37
BXH6/TyJ m 35880212.0 0.0   1   0.0 0.0 35880212.0, 35880212.0 2.33
BXH7/TyJ m 21472770.0 0.0   1   0.0 0.0 21472770.0, 21472770.0 0.37
BXH8/TyJ m 33038042.0 0.0   1   0.0 0.0 33038042.0, 33038042.0 1.94
BXH9/TyJ m 19344672.0 0.0   1   0.0 0.0 19344672.0, 19344672.0 0.08
C3H/HeJ m 15892098.0 3450621.0   2   2439957.0 0.217 13452141.0, 18332056.0 -0.39
C57BL/6J m 12067291.0 3872875.0   5 1732002.0 0.321 6985239.0, 17203282.0 -0.91
C57L/J m 7440982.0 0.0   1   0.0 0.0 7440982.0, 7440982.0 -1.54
C58/J m 27154194.0 0.0   1   0.0 0.0 27154194.0, 27154194.0 1.14
CAST/EiJ m 16992402.0 0.0   1   0.0 0.0 16992402.0, 16992402.0 -0.24
CBA/J m 17275534.0 0.0   1   0.0 0.0 17275534.0, 17275534.0 -0.2
CE/J m 10188444.0 0.0   1   0.0 0.0 10188444.0, 10188444.0 -1.17
CXB11/HiAJ m 13067441.0 5515635.0   2   3900143.0 0.422 9167298.0, 16967584.0 -0.78
CXB12/HiAJ m 11744638.0 1512584.0   2   1069558.0 0.129 10675080.0, 12814197.0 -0.96
CXB13/HiAJ m 16268999.0 5226341.0   3 3017429.0 0.321 12587501.0, 22250952.0 -0.34
CXB1/ByJ m 17636368.0 2447245.0   3 1412918.0 0.139 14811157.0, 19100394.0 -0.15
CXB2/ByJ m 12606212.0 4099324.0   3 2366746.0 0.325 9316354.0, 17198526.0 -0.84
CXB3/ByJ m 16613946.0 516711.0   2   365370.0 0.0311 16248576.0, 16979316.0 -0.29
CXB4/ByJ m 21683021.0 6912513.0   2   4887885.0 0.319 16795136.0, 26570906.0 0.4
CXB6/ByJ m 9803626.0 3230998.0   3 1865418.0 0.33 7558692.0, 13506704.0 -1.22
CXB7/ByJ m 19618175.0 3856748.0   2   2727133.0 0.197 16891042.0, 22345308.0 0.12
CXB8/HiAJ m 20137151.0 3712714.0   3 2143537.0 0.184 17948840.0, 24423910.0 0.19
CXB9/HiAJ m 10502262.0 1692998.0   3 977453.0 0.161 9188451.0, 12412830.0 -1.13
DBA/2J m 15138430.0 3332172.0   4 1666086.0 0.22 10748350.0, 18515348.0 -0.49
FVB/NJ m 13838380.0 0.0   1   0.0 0.0 13838380.0, 13838380.0 -0.67
I/LnJ m 16790496.0 0.0   1   0.0 0.0 16790496.0, 16790496.0 -0.27
KK/HlJ m 11695178.0 0.0   1   0.0 0.0 11695178.0, 11695178.0 -0.96
LG/J m 20605346.0 0.0   1   0.0 0.0 20605346.0, 20605346.0 0.25
LP/J m 21631216.0 0.0   1   0.0 0.0 21631216.0, 21631216.0 0.39
MA/MyJ m 9997314.0 0.0   1   0.0 0.0 9997314.0, 9997314.0 -1.19
NOD/ShiLtJ m 8514760.0 0.0   1   0.0 0.0 8514760.0, 8514760.0 -1.4
NON/ShiLtJ m 11159677.0 0.0   1   0.0 0.0 11159677.0, 11159677.0 -1.04
NZW/LacJ m 20744518.0 0.0   1   0.0 0.0 20744518.0, 20744518.0 0.27
PL/J m 14155584.0 0.0   1   0.0 0.0 14155584.0, 14155584.0 -0.63
RIIIS/J m 16896500.0 0.0   1   0.0 0.0 16896500.0, 16896500.0 -0.25
SEA/GnJ m 14618568.0 0.0   1   0.0 0.0 14618568.0, 14618568.0 -0.56
SJL/J m 25062828.0 0.0   1   0.0 0.0 25062828.0, 25062828.0 0.86
SM/J m 10928312.0 0.0   1   0.0 0.0 10928312.0, 10928312.0 -1.07
SWR/J m 15705107.0 0.0   1   0.0 0.0 15705107.0, 15705107.0 -0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 14852240.0 3547552.3272 22061733.7384 7642746.2616
AXB19b/PgnJ m 27288797.0 3547552.3272 34498290.7384 20079303.2616
AXB24/PgnJ m 20167550.25 3547552.3272 27377043.9884 12958056.5116
BALB/cJ m 17543620.6667 2896564.3458 23430147.6543 11657093.679
BXA16/PgnJ m 20149075.0 3547552.3272 27358568.7384 12939581.2616
BXD19/TyJ m 19651399.0 3547552.3272 26860892.7384 12441905.2616
BXD28/TyJ m 26124800.0 3547552.3272 33334293.7384 18915306.2616
BXH4/TyJ m 36204546.0 3547552.3272 43414039.7384 28995052.2616
C3H/HeJ m 15892098.5 3547552.3272 23101592.2384 8682604.7616
C57BL/6J m 12067291.0 2243669.0945 16626975.198 7507606.802
CXB11/HiAJ m 13067441.0 3547552.3272 20276934.7384 5857947.2616
CXB12/HiAJ m 11744638.5 3547552.3272 18954132.2384 4535144.7616
CXB13/HiAJ m 16268999.0 2896564.3458 22155525.9876 10382472.0124
CXB1/ByJ m 17636368.3333 2896564.3458 23522895.321 11749841.3457
CXB2/ByJ m 12606211.6667 2896564.3458 18492738.6543 6719684.679
CXB3/ByJ m 16613946.0 3547552.3272 23823439.7384 9404452.2616
CXB4/ByJ m 21683021.0 3547552.3272 28892514.7384 14473527.2616
CXB6/ByJ m 9803626.3333 2896564.3458 15690153.321 3917099.3457
CXB7/ByJ m 19618175.0 3547552.3272 26827668.7384 12408681.2616
CXB8/HiAJ m 20137150.6667 2896564.3458 26023677.6543 14250623.679
CXB9/HiAJ m 10502262.3333 2896564.3458 16388789.321 4615735.3457
DBA/2J m 15138429.75 2508498.3072 20236311.6614 10040547.8386




  GWAS USING LINEAR MIXED MODELS