Phenotype measure:   HMDPpheno7   glucosamine

ID, description, units MPD:50202   glucosamine   liver glucosamine (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   93 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver glucosamine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested93 strains
Mean of the strain means142267   None
Median of the strain means131136   None
SD of the strain means± 52252
Coefficient of variation (CV)0.367
Min–max range of strain means63646   –   404912   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 17 46680231892.6253 2745895993.6838 2.5713 0.0168
Residuals 24 25629497672.9708 1067895736.3738


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 79834.0 0.0   1   0.0 0.0 79834.0, 79834.0 -1.19
A/J m 94262.0 38781.0   2   27422.0 0.411 66839.0, 121684.0 -0.92
AKR/J m 136673.0 0.0   1   0.0 0.0 136673.0, 136673.0 -0.11
AXB12/PgnJ m 90871.0 0.0   1   0.0 0.0 90871.0, 90871.0 -0.98
AXB15/PgnJ m 112232.0 0.0   1   0.0 0.0 112232.0, 112232.0 -0.57
AXB19a/PgnJ m 187871.0 0.0   1   0.0 0.0 187871.0, 187871.0 0.87
AXB19/PgnJ m 201019.0 0.0   1   0.0 0.0 201019.0, 201019.0 1.12
AXB1/PgnJ m 238022.0 0.0   1   0.0 0.0 238022.0, 238022.0 1.83
AXB23/PgnJ m 178800.0 0.0   1   0.0 0.0 178800.0, 178800.0 0.7
AXB24/PgnJ m 88855.0 0.0   1   0.0 0.0 88855.0, 88855.0 -1.02
AXB2/PgnJ m 102000.0 0.0   1   0.0 0.0 102000.0, 102000.0 -0.77
AXB4/PgnJ m 177297.0 0.0   1   0.0 0.0 177297.0, 177297.0 0.67
AXB5/PgnJ m 117764.0 0.0   1   0.0 0.0 117764.0, 117764.0 -0.47
AXB6/PgnJ m 148968.0 0.0   1   0.0 0.0 148968.0, 148968.0 0.13
AXB8/PgnJ m 103191.0 0.0   1   0.0 0.0 103191.0, 103191.0 -0.75
BALB/cJ m 115673.0 22002.0   2   15558.0 0.19 100115.0, 131230.0 -0.51
BTBR T+ Itpr3tf/J m 144713.0 0.0   1   0.0 0.0 144713.0, 144713.0 0.05
BUB/BnJ m 107840.0 0.0   1   0.0 0.0 107840.0, 107840.0 -0.66
BXA11/PgnJ m 128583.0 0.0   1   0.0 0.0 128583.0, 128583.0 -0.26
BXA12/PgnJ m 63646.0 0.0   1   0.0 0.0 63646.0, 63646.0 -1.5
BXA13/PgnJ m 131136.0 0.0   1   0.0 0.0 131136.0, 131136.0 -0.21
BXA16/PgnJ m 172880.0 0.0   1   0.0 0.0 172880.0, 172880.0 0.59
BXA1/PgnJ m 154303.0 0.0   1   0.0 0.0 154303.0, 154303.0 0.23
BXA24/PgnJ m 127442.0 0.0   1   0.0 0.0 127442.0, 127442.0 -0.28
BXA25/PgnJ m 104359.0 0.0   1   0.0 0.0 104359.0, 104359.0 -0.73
BXA26/PgnJ m 161628.0 0.0   1   0.0 0.0 161628.0, 161628.0 0.37
BXA2/PgnJ m 207976.0 0.0   1   0.0 0.0 207976.0, 207976.0 1.26
BXA4/PgnJ m 119946.0 0.0   1   0.0 0.0 119946.0, 119946.0 -0.43
BXD11/TyJ m 99180.0 0.0   1   0.0 0.0 99180.0, 99180.0 -0.82
BXD12/TyJ m 149185.0 0.0   1   0.0 0.0 149185.0, 149185.0 0.13
BXD13/TyJ m 163404.0 0.0   1   0.0 0.0 163404.0, 163404.0 0.4
BXD14/TyJ m 173519.0 0.0   1   0.0 0.0 173519.0, 173519.0 0.6
BXD18/TyJ m 147787.0 0.0   1   0.0 0.0 147787.0, 147787.0 0.11
BXD19/TyJ m 170446.0 0.0   1   0.0 0.0 170446.0, 170446.0 0.54
BXD1/TyJ m 159359.0 0.0   1   0.0 0.0 159359.0, 159359.0 0.33
BXD20/TyJ m 188536.0 0.0   1   0.0 0.0 188536.0, 188536.0 0.89
BXD21/TyJ m 133733.0 0.0   1   0.0 0.0 133733.0, 133733.0 -0.16
BXD22/TyJ m 254358.0 0.0   1   0.0 0.0 254358.0, 254358.0 2.15
BXD24/TyJ m 85563.0 0.0   1   0.0 0.0 85563.0, 85563.0 -1.09
BXD24/TyJ-Cep290rd16/J m 136252.0 0.0   1   0.0 0.0 136252.0, 136252.0 -0.12
BXD28/TyJ m 178852.0 22468.0   2   15887.0 0.126 162965.0, 194740.0 0.7
BXD29-Tlr4lps-2J/J m 159442.0 0.0   1   0.0 0.0 159442.0, 159442.0 0.33
BXD2/TyJ m 131295.0 0.0   1   0.0 0.0 131295.0, 131295.0 -0.21
BXD32/TyJ m 144671.0 0.0   1   0.0 0.0 144671.0, 144671.0 0.05
BXD33/TyJ m 129633.0 0.0   1   0.0 0.0 129633.0, 129633.0 -0.24
BXD34/TyJ m 113294.0 0.0   1   0.0 0.0 113294.0, 113294.0 -0.55
BXD36/TyJ m 161112.0 0.0   1   0.0 0.0 161112.0, 161112.0 0.36
BXD38/TyJ m 93936.0 0.0   1   0.0 0.0 93936.0, 93936.0 -0.92
BXD40/TyJ m 154740.0 0.0   1   0.0 0.0 154740.0, 154740.0 0.24
BXD42/TyJ m 169857.0 0.0   1   0.0 0.0 169857.0, 169857.0 0.53
BXD8/TyJ m 78729.0 0.0   1   0.0 0.0 78729.0, 78729.0 -1.22
BXD9/TyJ m 171882.0 0.0   1   0.0 0.0 171882.0, 171882.0 0.57
BXH10/TyJ m 126764.0 0.0   1   0.0 0.0 126764.0, 126764.0 -0.3
BXH19/TyJ m 197837.0 0.0   1   0.0 0.0 197837.0, 197837.0 1.06
BXH20/KccJ m 248410.0 0.0   1   0.0 0.0 248410.0, 248410.0 2.03
BXH22/KccJ m 136363.0 0.0   1   0.0 0.0 136363.0, 136363.0 -0.11
BXH2/TyJ m 128160.0 0.0   1   0.0 0.0 128160.0, 128160.0 -0.27
BXH4/TyJ m 227706.0 82735.0   2   58502.0 0.363 169204.0, 286208.0 1.64
BXH6/TyJ m 309917.0 0.0   1   0.0 0.0 309917.0, 309917.0 3.21
BXH8/TyJ m 233938.0 0.0   1   0.0 0.0 233938.0, 233938.0 1.75
C3H/HeJ m 115802.0 18546.0   2   13114.0 0.16 102688.0, 128916.0 -0.51
C57BL/6J m 103779.0 47657.0   4 23828.0 0.459 66585.0, 173190.0 -0.74
C57L/J m 100976.0 0.0   1   0.0 0.0 100976.0, 100976.0 -0.79
C58/J m 404912.0 0.0   1   0.0 0.0 404912.0, 404912.0 5.03
CAST/EiJ m 141136.0 0.0   1   0.0 0.0 141136.0, 141136.0 -0.02
CBA/J m 116748.0 0.0   1   0.0 0.0 116748.0, 116748.0 -0.49
CE/J m 79453.0 0.0   1   0.0 0.0 79453.0, 79453.0 -1.2
CXB11/HiAJ m 132614.0 32201.0   2   22769.0 0.243 109845.0, 155384.0 -0.18
CXB12/HiAJ m 97254.0 9295.0   2   6573.0 0.0956 90681.0, 103826.0 -0.86
CXB13/HiAJ m 107108.0 22604.0   3 13051.0 0.211 81595.0, 124637.0 -0.67
CXB1/ByJ m 111734.0 15926.0   2   11261.0 0.143 100473.0, 122995.0 -0.58
CXB2/ByJ m 79005.0 10503.0   2   7427.0 0.133 71578.0, 86432.0 -1.21
CXB3/ByJ m 141618.0 35229.0   2   24911.0 0.249 116707.0, 166529.0 -0.01
CXB4/ByJ m 133709.0 43585.0   2   30819.0 0.326 102890.0, 164528.0 -0.16
CXB6/ByJ m 69880.0 4605.0   2   3256.0 0.0659 66623.0, 73136.0 -1.39
CXB7/ByJ m 136956.0 38571.0   2   27274.0 0.282 109683.0, 164230.0 -0.1
CXB8/HiAJ m 122108.0 12329.0   3 7118.0 0.101 107902.0, 130011.0 -0.39
CXB9/HiAJ m 89753.0 28886.0   2   20425.0 0.322 69328.0, 110178.0 -1.01
DBA/2J m 120333.0 16703.0   4 8352.0 0.139 105699.0, 139929.0 -0.42
FVB/NJ m 116487.0 0.0   1   0.0 0.0 116487.0, 116487.0 -0.49
I/LnJ m 130282.0 0.0   1   0.0 0.0 130282.0, 130282.0 -0.23
KK/HlJ m 128538.0 0.0   1   0.0 0.0 128538.0, 128538.0 -0.26
LG/J m 142932.0 0.0   1   0.0 0.0 142932.0, 142932.0 0.01
LP/J m 122235.0 0.0   1   0.0 0.0 122235.0, 122235.0 -0.38
MA/MyJ m 102299.0 0.0   1   0.0 0.0 102299.0, 102299.0 -0.76
NOD/ShiLtJ m 83099.0 0.0   1   0.0 0.0 83099.0, 83099.0 -1.13
NON/ShiLtJ m 125486.0 0.0   1   0.0 0.0 125486.0, 125486.0 -0.32
NZW/LacJ m 158237.0 0.0   1   0.0 0.0 158237.0, 158237.0 0.31
PL/J m 130241.0 0.0   1   0.0 0.0 130241.0, 130241.0 -0.23
RIIIS/J m 115155.0 0.0   1   0.0 0.0 115155.0, 115155.0 -0.52
SJL/J m 178588.0 0.0   1   0.0 0.0 178588.0, 178588.0 0.7
SM/J m 126835.0 0.0   1   0.0 0.0 126835.0, 126835.0 -0.3
SWR/J m 209886.0 0.0   1   0.0 0.0 209886.0, 209886.0 1.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 94261.55 23107.312 141952.698 46570.402
BALB/cJ m 115672.55 23107.312 163363.698 67981.402
BXD28/TyJ m 178852.45 23107.312 226543.598 131161.302
BXH4/TyJ m 227705.75 23107.312 275396.898 180014.602
C3H/HeJ m 115801.8 23107.312 163492.948 68110.652
C57BL/6J m 103778.65 16339.337 137501.3842 70055.9158
CXB11/HiAJ m 132614.5 23107.312 180305.648 84923.352
CXB12/HiAJ m 97253.7 23107.312 144944.848 49562.552
CXB13/HiAJ m 107107.9667 18867.0412 146047.626 68168.3074
CXB1/ByJ m 111734.0 23107.312 159425.148 64042.852
CXB2/ByJ m 79005.15 23107.312 126696.298 31314.002
CXB3/ByJ m 141617.95 23107.312 189309.098 93926.802
CXB4/ByJ m 133709.15 23107.312 181400.298 86018.002
CXB6/ByJ m 69879.5 23107.312 117570.648 22188.352
CXB7/ByJ m 136956.5 23107.312 184647.648 89265.352
CXB8/HiAJ m 122108.1333 18867.0412 161047.7926 83168.474
CXB9/HiAJ m 89753.05 23107.312 137444.198 42061.902
DBA/2J m 120332.725 16339.337 154055.4592 86609.9908




  GWAS USING LINEAR MIXED MODELS