Project measure / variable:   HMDPpheno7   glucosamine

ID, description, units MPD:50202   glucosamine   liver glucosamine (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   93 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested93 strains
Mean of the strain means142267   None
Median of the strain means131136   None
SD of the strain means± 52252
Coefficient of variation (CV)0.367
Min–max range of strain means63646   –   404912   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 17 46680231892.6253 2745895993.6838 2.5713 0.0168
Residuals 24 25629497672.9708 1067895736.3738


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 93 (93)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 79834.0 0.0   1   0.0 0.0 79834.0, 79834.0 -1.19
A/J m 94262.0 38781.0   2   27422.0 0.411 66839.0, 121684.0 -0.92
AKR/J m 136673.0 0.0   1   0.0 0.0 136673.0, 136673.0 -0.11
AXB12/PgnJ m 90871.0 0.0   1   0.0 0.0 90871.0, 90871.0 -0.98
AXB15/PgnJ m 112232.0 0.0   1   0.0 0.0 112232.0, 112232.0 -0.57
AXB19a/PgnJ m 187871.0 0.0   1   0.0 0.0 187871.0, 187871.0 0.87
AXB19/PgnJ m 201019.0 0.0   1   0.0 0.0 201019.0, 201019.0 1.12
AXB1/PgnJ m 238022.0 0.0   1   0.0 0.0 238022.0, 238022.0 1.83
AXB23/PgnJ m 178800.0 0.0   1   0.0 0.0 178800.0, 178800.0 0.7
AXB24/PgnJ m 88855.0 0.0   1   0.0 0.0 88855.0, 88855.0 -1.02
AXB2/PgnJ m 102000.0 0.0   1   0.0 0.0 102000.0, 102000.0 -0.77
AXB4/PgnJ m 177297.0 0.0   1   0.0 0.0 177297.0, 177297.0 0.67
AXB5/PgnJ m 117764.0 0.0   1   0.0 0.0 117764.0, 117764.0 -0.47
AXB6/PgnJ m 148968.0 0.0   1   0.0 0.0 148968.0, 148968.0 0.13
AXB8/PgnJ m 103191.0 0.0   1   0.0 0.0 103191.0, 103191.0 -0.75
BALB/cJ m 115673.0 22002.0   2   15558.0 0.19 100115.0, 131230.0 -0.51
BTBR T+ Itpr3tf/J m 144713.0 0.0   1   0.0 0.0 144713.0, 144713.0 0.05
BUB/BnJ m 107840.0 0.0   1   0.0 0.0 107840.0, 107840.0 -0.66
BXA11/PgnJ m 128583.0 0.0   1   0.0 0.0 128583.0, 128583.0 -0.26
BXA12/PgnJ m 63646.0 0.0   1   0.0 0.0 63646.0, 63646.0 -1.5
BXA13/PgnJ m 131136.0 0.0   1   0.0 0.0 131136.0, 131136.0 -0.21
BXA16/PgnJ m 172880.0 0.0   1   0.0 0.0 172880.0, 172880.0 0.59
BXA1/PgnJ m 154303.0 0.0   1   0.0 0.0 154303.0, 154303.0 0.23
BXA24/PgnJ m 127442.0 0.0   1   0.0 0.0 127442.0, 127442.0 -0.28
BXA25/PgnJ m 104359.0 0.0   1   0.0 0.0 104359.0, 104359.0 -0.73
BXA26/PgnJ m 161628.0 0.0   1   0.0 0.0 161628.0, 161628.0 0.37
BXA2/PgnJ m 207976.0 0.0   1   0.0 0.0 207976.0, 207976.0 1.26
BXA4/PgnJ m 119946.0 0.0   1   0.0 0.0 119946.0, 119946.0 -0.43
BXD11/TyJ m 99180.0 0.0   1   0.0 0.0 99180.0, 99180.0 -0.82
BXD12/TyJ m 149185.0 0.0   1   0.0 0.0 149185.0, 149185.0 0.13
BXD13/TyJ m 163404.0 0.0   1   0.0 0.0 163404.0, 163404.0 0.4
BXD14/TyJ m 173519.0 0.0   1   0.0 0.0 173519.0, 173519.0 0.6
BXD18/TyJ m 147787.0 0.0   1   0.0 0.0 147787.0, 147787.0 0.11
BXD19/TyJ m 170446.0 0.0   1   0.0 0.0 170446.0, 170446.0 0.54
BXD1/TyJ m 159359.0 0.0   1   0.0 0.0 159359.0, 159359.0 0.33
BXD20/TyJ m 188536.0 0.0   1   0.0 0.0 188536.0, 188536.0 0.89
BXD21/TyJ m 133733.0 0.0   1   0.0 0.0 133733.0, 133733.0 -0.16
BXD22/TyJ m 254358.0 0.0   1   0.0 0.0 254358.0, 254358.0 2.15
BXD24/TyJ m 85563.0 0.0   1   0.0 0.0 85563.0, 85563.0 -1.09
BXD24/TyJ-Cep290rd16/J m 136252.0 0.0   1   0.0 0.0 136252.0, 136252.0 -0.12
BXD28/TyJ m 178852.0 22468.0   2   15887.0 0.126 162965.0, 194740.0 0.7
BXD29-Tlr4lps-2J/J m 159442.0 0.0   1   0.0 0.0 159442.0, 159442.0 0.33
BXD2/TyJ m 131295.0 0.0   1   0.0 0.0 131295.0, 131295.0 -0.21
BXD32/TyJ m 144671.0 0.0   1   0.0 0.0 144671.0, 144671.0 0.05
BXD33/TyJ m 129633.0 0.0   1   0.0 0.0 129633.0, 129633.0 -0.24
BXD34/TyJ m 113294.0 0.0   1   0.0 0.0 113294.0, 113294.0 -0.55
BXD36/TyJ m 161112.0 0.0   1   0.0 0.0 161112.0, 161112.0 0.36
BXD38/TyJ m 93936.0 0.0   1   0.0 0.0 93936.0, 93936.0 -0.92
BXD40/TyJ m 154740.0 0.0   1   0.0 0.0 154740.0, 154740.0 0.24
BXD42/TyJ m 169857.0 0.0   1   0.0 0.0 169857.0, 169857.0 0.53
BXD8/TyJ m 78729.0 0.0   1   0.0 0.0 78729.0, 78729.0 -1.22
BXD9/TyJ m 171882.0 0.0   1   0.0 0.0 171882.0, 171882.0 0.57
BXH10/TyJ m 126764.0 0.0   1   0.0 0.0 126764.0, 126764.0 -0.3
BXH19/TyJ m 197837.0 0.0   1   0.0 0.0 197837.0, 197837.0 1.06
BXH20/KccJ m 248410.0 0.0   1   0.0 0.0 248410.0, 248410.0 2.03
BXH22/KccJ m 136363.0 0.0   1   0.0 0.0 136363.0, 136363.0 -0.11
BXH2/TyJ m 128160.0 0.0   1   0.0 0.0 128160.0, 128160.0 -0.27
BXH4/TyJ m 227706.0 82735.0   2   58502.0 0.363 169204.0, 286208.0 1.64
BXH6/TyJ m 309917.0 0.0   1   0.0 0.0 309917.0, 309917.0 3.21
BXH8/TyJ m 233938.0 0.0   1   0.0 0.0 233938.0, 233938.0 1.75
C3H/HeJ m 115802.0 18546.0   2   13114.0 0.16 102688.0, 128916.0 -0.51
C57BL/6J m 103779.0 47657.0   4 23828.0 0.459 66585.0, 173190.0 -0.74
C57L/J m 100976.0 0.0   1   0.0 0.0 100976.0, 100976.0 -0.79
C58/J m 404912.0 0.0   1   0.0 0.0 404912.0, 404912.0 5.03
CAST/EiJ m 141136.0 0.0   1   0.0 0.0 141136.0, 141136.0 -0.02
CBA/J m 116748.0 0.0   1   0.0 0.0 116748.0, 116748.0 -0.49
CE/J m 79453.0 0.0   1   0.0 0.0 79453.0, 79453.0 -1.2
CXB11/HiAJ m 132614.0 32201.0   2   22769.0 0.243 109845.0, 155384.0 -0.18
CXB12/HiAJ m 97254.0 9295.0   2   6573.0 0.0956 90681.0, 103826.0 -0.86
CXB13/HiAJ m 107108.0 22604.0   3 13051.0 0.211 81595.0, 124637.0 -0.67
CXB1/ByJ m 111734.0 15926.0   2   11261.0 0.143 100473.0, 122995.0 -0.58
CXB2/ByJ m 79005.0 10503.0   2   7427.0 0.133 71578.0, 86432.0 -1.21
CXB3/ByJ m 141618.0 35229.0   2   24911.0 0.249 116707.0, 166529.0 -0.01
CXB4/ByJ m 133709.0 43585.0   2   30819.0 0.326 102890.0, 164528.0 -0.16
CXB6/ByJ m 69880.0 4605.0   2   3256.0 0.0659 66623.0, 73136.0 -1.39
CXB7/ByJ m 136956.0 38571.0   2   27274.0 0.282 109683.0, 164230.0 -0.1
CXB8/HiAJ m 122108.0 12329.0   3 7118.0 0.101 107902.0, 130011.0 -0.39
CXB9/HiAJ m 89753.0 28886.0   2   20425.0 0.322 69328.0, 110178.0 -1.01
DBA/2J m 120333.0 16703.0   4 8352.0 0.139 105699.0, 139929.0 -0.42
FVB/NJ m 116487.0 0.0   1   0.0 0.0 116487.0, 116487.0 -0.49
I/LnJ m 130282.0 0.0   1   0.0 0.0 130282.0, 130282.0 -0.23
KK/HlJ m 128538.0 0.0   1   0.0 0.0 128538.0, 128538.0 -0.26
LG/J m 142932.0 0.0   1   0.0 0.0 142932.0, 142932.0 0.01
LP/J m 122235.0 0.0   1   0.0 0.0 122235.0, 122235.0 -0.38
MA/MyJ m 102299.0 0.0   1   0.0 0.0 102299.0, 102299.0 -0.76
NOD/ShiLtJ m 83099.0 0.0   1   0.0 0.0 83099.0, 83099.0 -1.13
NON/ShiLtJ m 125486.0 0.0   1   0.0 0.0 125486.0, 125486.0 -0.32
NZW/LacJ m 158237.0 0.0   1   0.0 0.0 158237.0, 158237.0 0.31
PL/J m 130241.0 0.0   1   0.0 0.0 130241.0, 130241.0 -0.23
RIIIS/J m 115155.0 0.0   1   0.0 0.0 115155.0, 115155.0 -0.52
SJL/J m 178588.0 0.0   1   0.0 0.0 178588.0, 178588.0 0.7
SM/J m 126835.0 0.0   1   0.0 0.0 126835.0, 126835.0 -0.3
SWR/J m 209886.0 0.0   1   0.0 0.0 209886.0, 209886.0 1.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 94261.55 23107.312 141952.698 46570.402
BALB/cJ m 115672.55 23107.312 163363.698 67981.402
BXD28/TyJ m 178852.45 23107.312 226543.598 131161.302
BXH4/TyJ m 227705.75 23107.312 275396.898 180014.602
C3H/HeJ m 115801.8 23107.312 163492.948 68110.652
C57BL/6J m 103778.65 16339.337 137501.3842 70055.9158
CXB11/HiAJ m 132614.5 23107.312 180305.648 84923.352
CXB12/HiAJ m 97253.7 23107.312 144944.848 49562.552
CXB13/HiAJ m 107107.9667 18867.0412 146047.626 68168.3074
CXB1/ByJ m 111734.0 23107.312 159425.148 64042.852
CXB2/ByJ m 79005.15 23107.312 126696.298 31314.002
CXB3/ByJ m 141617.95 23107.312 189309.098 93926.802
CXB4/ByJ m 133709.15 23107.312 181400.298 86018.002
CXB6/ByJ m 69879.5 23107.312 117570.648 22188.352
CXB7/ByJ m 136956.5 23107.312 184647.648 89265.352
CXB8/HiAJ m 122108.1333 18867.0412 161047.7926 83168.474
CXB9/HiAJ m 89753.05 23107.312 137444.198 42061.902
DBA/2J m 120332.725 16339.337 154055.4592 86609.9908




  GWAS USING LINEAR MIXED MODELS

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