Project measure / variable:   HMDPpheno6   Val

ID, description, units MPD:50177   Val   liver valine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver valine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means20759648   None
Median of the strain means20655725   None
SD of the strain means± 3801562
Coefficient of variation (CV)0.183
Min–max range of strain means12446460   –   38230860   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 795437159311281.0 37877959967203.8 9.9275 < 0.0001
Residuals 34 129725166910355.0 3815446085598.68


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 18308120.0 0.0   1   0.0 0.0 18308120.0, 18308120.0 -0.64
A/J m 19848796.0 1611748.0   2   1139678.0 0.0812 18709118.0, 20988474.0 -0.24
AKR/J m 16457646.0 0.0   1   0.0 0.0 16457646.0, 16457646.0 -1.13
AXB10/PgnJ m 21671002.0 0.0   1   0.0 0.0 21671002.0, 21671002.0 0.24
AXB12/PgnJ m 18325486.0 0.0   1   0.0 0.0 18325486.0, 18325486.0 -0.64
AXB13/PgnJ m 19142704.0 0.0   1   0.0 0.0 19142704.0, 19142704.0 -0.43
AXB15/PgnJ m 20717902.0 0.0   1   0.0 0.0 20717902.0, 20717902.0 -0.01
AXB19a/PgnJ m 22339222.0 0.0   1   0.0 0.0 22339222.0, 22339222.0 0.42
AXB19b/PgnJ m 29142222.0 4224081.0   2   2986876.0 0.145 26155346.0, 32129098.0 2.21
AXB19/PgnJ m 27819460.0 0.0   1   0.0 0.0 27819460.0, 27819460.0 1.86
AXB1/PgnJ m 26916998.0 0.0   1   0.0 0.0 26916998.0, 26916998.0 1.62
AXB23/PgnJ m 19189550.0 0.0   1   0.0 0.0 19189550.0, 19189550.0 -0.41
AXB24/PgnJ m 15493162.0 1467075.0   2   1037378.0 0.0947 14455784.0, 16530541.0 -1.39
AXB2/PgnJ m 17774622.0 0.0   1   0.0 0.0 17774622.0, 17774622.0 -0.79
AXB4/PgnJ m 26543796.0 0.0   1   0.0 0.0 26543796.0, 26543796.0 1.52
AXB5/PgnJ m 15485733.0 0.0   1   0.0 0.0 15485733.0, 15485733.0 -1.39
AXB6/PgnJ m 24979478.0 0.0   1   0.0 0.0 24979478.0, 24979478.0 1.11
AXB8/PgnJ m 20871716.0 0.0   1   0.0 0.0 20871716.0, 20871716.0 0.03
BALB/cJ m 20268296.0 1962997.0   3 1133337.0 0.0969 19048528.0, 22532714.0 -0.13
BTBR T+ Itpr3tf/J m 16224989.0 0.0   1   0.0 0.0 16224989.0, 16224989.0 -1.19
BUB/BnJ m 25506646.0 0.0   1   0.0 0.0 25506646.0, 25506646.0 1.25
BXA11/PgnJ m 18142800.0 0.0   1   0.0 0.0 18142800.0, 18142800.0 -0.69
BXA12/PgnJ m 12446460.0 0.0   1   0.0 0.0 12446460.0, 12446460.0 -2.19
BXA13/PgnJ m 22486346.0 0.0   1   0.0 0.0 22486346.0, 22486346.0 0.45
BXA14/PgnJ m 25422272.0 0.0   1   0.0 0.0 25422272.0, 25422272.0 1.23
BXA16/PgnJ m 19636741.0 1836182.0   2   1298377.0 0.0935 18338364.0, 20935118.0 -0.3
BXA1/PgnJ m 21010656.0 0.0   1   0.0 0.0 21010656.0, 21010656.0 0.07
BXA24/PgnJ m 24912908.0 0.0   1   0.0 0.0 24912908.0, 24912908.0 1.09
BXA25/PgnJ m 15841152.0 0.0   1   0.0 0.0 15841152.0, 15841152.0 -1.29
BXA26/PgnJ m 22085688.0 0.0   1   0.0 0.0 22085688.0, 22085688.0 0.35
BXA2/PgnJ m 21357126.0 0.0   1   0.0 0.0 21357126.0, 21357126.0 0.16
BXA4/PgnJ m 18756242.0 0.0   1   0.0 0.0 18756242.0, 18756242.0 -0.53
BXA7/PgnJ m 22159746.0 0.0   1   0.0 0.0 22159746.0, 22159746.0 0.37
BXA8/PgnJ m 19143698.0 0.0   1   0.0 0.0 19143698.0, 19143698.0 -0.43
BXD11/TyJ m 15930184.0 0.0   1   0.0 0.0 15930184.0, 15930184.0 -1.27
BXD12/TyJ m 25022118.0 0.0   1   0.0 0.0 25022118.0, 25022118.0 1.12
BXD13/TyJ m 20881000.0 0.0   1   0.0 0.0 20881000.0, 20881000.0 0.03
BXD14/TyJ m 23712340.0 0.0   1   0.0 0.0 23712340.0, 23712340.0 0.78
BXD15/TyJ m 22044164.0 0.0   1   0.0 0.0 22044164.0, 22044164.0 0.34
BXD18/TyJ m 14658500.0 0.0   1   0.0 0.0 14658500.0, 14658500.0 -1.6
BXD19/TyJ m 17385724.0 1242732.0   2   878744.0 0.0715 16506980.0, 18264468.0 -0.89
BXD1/TyJ m 17508654.0 0.0   1   0.0 0.0 17508654.0, 17508654.0 -0.86
BXD20/TyJ m 20751532.0 0.0   1   0.0 0.0 20751532.0, 20751532.0 0.0
BXD21/TyJ m 14074400.0 0.0   1   0.0 0.0 14074400.0, 14074400.0 -1.76
BXD22/TyJ m 23621070.0 0.0   1   0.0 0.0 23621070.0, 23621070.0 0.75
BXD24/TyJ m 18235020.0 0.0   1   0.0 0.0 18235020.0, 18235020.0 -0.66
BXD24/TyJ-Cep290rd16/J m 18029018.0 0.0   1   0.0 0.0 18029018.0, 18029018.0 -0.72
BXD28/TyJ m 19635652.0 2849833.0   2   2015136.0 0.145 17620516.0, 21650788.0 -0.3
BXD29-Tlr4lps-2J/J m 21319262.0 0.0   1   0.0 0.0 21319262.0, 21319262.0 0.15
BXD2/TyJ m 22170488.0 0.0   1   0.0 0.0 22170488.0, 22170488.0 0.37
BXD32/TyJ m 22508984.0 0.0   1   0.0 0.0 22508984.0, 22508984.0 0.46
BXD33/TyJ m 25674018.0 0.0   1   0.0 0.0 25674018.0, 25674018.0 1.29
BXD34/TyJ m 21667720.0 0.0   1   0.0 0.0 21667720.0, 21667720.0 0.24
BXD36/TyJ m 17025600.0 0.0   1   0.0 0.0 17025600.0, 17025600.0 -0.98
BXD38/TyJ m 17717570.0 0.0   1   0.0 0.0 17717570.0, 17717570.0 -0.8
BXD39/TyJ m 20314952.0 0.0   1   0.0 0.0 20314952.0, 20314952.0 -0.12
BXD40/TyJ m 20903184.0 0.0   1   0.0 0.0 20903184.0, 20903184.0 0.04
BXD42/TyJ m 16122724.0 0.0   1   0.0 0.0 16122724.0, 16122724.0 -1.22
BXD5/TyJ m 22265174.0 0.0   1   0.0 0.0 22265174.0, 22265174.0 0.4
BXD6/TyJ m 20250212.0 0.0   1   0.0 0.0 20250212.0, 20250212.0 -0.13
BXD8/TyJ m 16873802.0 0.0   1   0.0 0.0 16873802.0, 16873802.0 -1.02
BXD9/TyJ m 18669222.0 0.0   1   0.0 0.0 18669222.0, 18669222.0 -0.55
BXH10/TyJ m 21936164.0 0.0   1   0.0 0.0 21936164.0, 21936164.0 0.31
BXH19/TyJ m 19940488.0 0.0   1   0.0 0.0 19940488.0, 19940488.0 -0.22
BXH20/KccJ m 22665334.0 0.0   1   0.0 0.0 22665334.0, 22665334.0 0.5
BXH22/KccJ m 21568280.0 0.0   1   0.0 0.0 21568280.0, 21568280.0 0.21
BXH2/TyJ m 22959540.0 0.0   1   0.0 0.0 22959540.0, 22959540.0 0.58
BXH4/TyJ m 20758266.0 2120410.0   2   1499356.0 0.102 19258910.0, 22257622.0 0.0
BXH6/TyJ m 23215164.0 0.0   1   0.0 0.0 23215164.0, 23215164.0 0.65
BXH7/TyJ m 19636244.0 0.0   1   0.0 0.0 19636244.0, 19636244.0 -0.3
BXH8/TyJ m 24818980.0 0.0   1   0.0 0.0 24818980.0, 24818980.0 1.07
BXH9/TyJ m 18857852.0 0.0   1   0.0 0.0 18857852.0, 18857852.0 -0.5
C3H/HeJ m 20924297.0 1451949.0   2   1026683.0 0.0694 19897614.0, 21950980.0 0.04
C57BL/6J m 25280375.0 1832714.0   5 819615.0 0.0725 22154868.0, 26440374.0 1.19
C57L/J m 15443567.0 0.0   1   0.0 0.0 15443567.0, 15443567.0 -1.4
C58/J m 38230860.0 0.0   1   0.0 0.0 38230860.0, 38230860.0 4.6
CAST/EiJ m 17569966.0 0.0   1   0.0 0.0 17569966.0, 17569966.0 -0.84
CBA/J m 16717466.0 0.0   1   0.0 0.0 16717466.0, 16717466.0 -1.06
CE/J m 21298110.0 0.0   1   0.0 0.0 21298110.0, 21298110.0 0.14
CXB11/HiAJ m 19066801.0 1424015.0   2   1006931.0 0.0747 18059870.0, 20073732.0 -0.45
CXB12/HiAJ m 23585435.0 1923988.0   2   1360465.0 0.0816 22224970.0, 24945900.0 0.74
CXB13/HiAJ m 26124716.0 3176733.0   3 1834088.0 0.122 23981354.0, 29774406.0 1.41
CXB1/ByJ m 19152491.0 2220708.0   3 1282126.0 0.116 16755634.0, 21140128.0 -0.42
CXB2/ByJ m 24140483.0 2551114.0   3 1472886.0 0.106 22197028.0, 27029348.0 0.89
CXB3/ByJ m 20959269.0 69473.0   2   49125.0 0.00331 20910144.0, 21008394.0 0.05
CXB4/ByJ m 22606419.0 1312451.0   2   928043.0 0.0581 21678376.0, 23534462.0 0.49
CXB6/ByJ m 20068463.0 1825679.0   3 1054056.0 0.091 17968650.0, 21280206.0 -0.18
CXB7/ByJ m 22507145.0 2002268.0   2   1415817.0 0.089 21091328.0, 23922962.0 0.46
CXB8/HiAJ m 30002614.0 794847.0   3 458905.0 0.0265 29193636.0, 30782532.0 2.43
CXB9/HiAJ m 23573809.0 282577.0   3 163146.0 0.012 23263970.0, 23817328.0 0.74
DBA/2J m 16040055.0 1115087.0   4 557543.0 0.0695 15059609.0, 17279170.0 -1.24
FVB/NJ m 15920497.0 0.0   1   0.0 0.0 15920497.0, 15920497.0 -1.27
I/LnJ m 20593548.0 0.0   1   0.0 0.0 20593548.0, 20593548.0 -0.04
KK/HlJ m 17851004.0 0.0   1   0.0 0.0 17851004.0, 17851004.0 -0.77
LG/J m 19534860.0 0.0   1   0.0 0.0 19534860.0, 19534860.0 -0.32
LP/J m 20036002.0 0.0   1   0.0 0.0 20036002.0, 20036002.0 -0.19
MA/MyJ m 15535708.0 0.0   1   0.0 0.0 15535708.0, 15535708.0 -1.37
NOD/ShiLtJ m 21892888.0 0.0   1   0.0 0.0 21892888.0, 21892888.0 0.3
NON/ShiLtJ m 23099946.0 0.0   1   0.0 0.0 23099946.0, 23099946.0 0.62
NZW/LacJ m 17803508.0 0.0   1   0.0 0.0 17803508.0, 17803508.0 -0.78
PL/J m 25815826.0 0.0   1   0.0 0.0 25815826.0, 25815826.0 1.33
RIIIS/J m 18241754.0 0.0   1   0.0 0.0 18241754.0, 18241754.0 -0.66
SEA/GnJ m 19572726.0 0.0   1   0.0 0.0 19572726.0, 19572726.0 -0.31
SJL/J m 20404308.0 0.0   1   0.0 0.0 20404308.0, 20404308.0 -0.09
SM/J m 18183838.0 0.0   1   0.0 0.0 18183838.0, 18183838.0 -0.68
SWR/J m 24985972.0 0.0   1   0.0 0.0 24985972.0, 24985972.0 1.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 19848796.0 1381203.4762 22655739.1809 17041852.8191
AXB19b/PgnJ m 29142222.0 1381203.4762 31949165.1809 26335278.8191
AXB24/PgnJ m 15493162.5 1381203.4762 18300105.6809 12686219.3191
BALB/cJ m 20268296.0 1127747.9159 22560155.51 17976436.49
BXA16/PgnJ m 19636741.0 1381203.4762 22443684.1809 16829797.8191
BXD19/TyJ m 17385724.0 1381203.4762 20192667.1809 14578780.8191
BXD28/TyJ m 19635652.0 1381203.4762 22442595.1809 16828708.8191
BXH4/TyJ m 20758266.0 1381203.4762 23565209.1809 17951322.8191
C3H/HeJ m 20924297.0 1381203.4762 23731240.1809 18117353.8191
C57BL/6J m 25280374.8 873549.7794 27055641.5428 23505108.0572
CXB11/HiAJ m 19066801.0 1381203.4762 21873744.1809 16259857.8191
CXB12/HiAJ m 23585435.0 1381203.4762 26392378.1809 20778491.8191
CXB13/HiAJ m 26124716.0 1127747.9159 28416575.51 23832856.49
CXB1/ByJ m 19152490.6667 1127747.9159 21444350.1767 16860631.1566
CXB2/ByJ m 24140482.6667 1127747.9159 26432342.1767 21848623.1566
CXB3/ByJ m 20959269.0 1381203.4762 23766212.1809 18152325.8191
CXB4/ByJ m 22606419.0 1381203.4762 25413362.1809 19799475.8191
CXB6/ByJ m 20068463.3333 1127747.9159 22360322.8434 17776603.8233
CXB7/ByJ m 22507145.0 1381203.4762 25314088.1809 19700201.8191
CXB8/HiAJ m 30002614.0 1127747.9159 32294473.51 27710754.49
CXB9/HiAJ m 23573808.6667 1127747.9159 25865668.1767 21281949.1566
DBA/2J m 16040054.75 976658.3443 18024863.3076 14055246.1924




  GWAS USING LINEAR MIXED MODELS