Project measure / variable:   HMDPpheno6   Leu

ID, description, units MPD:50172   Leu   liver leucine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver leucine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means39666362   None
Median of the strain means39277090   None
SD of the strain means± 7273715
Coefficient of variation (CV)0.183
Min–max range of strain means22954678   –   72644944   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 2808577724691870.0 133741796413899.0 11.6934 < 0.0001
Residuals 34 388869948529897.0 11437351427349.9


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 38684860.0 0.0   1   0.0 0.0 38684860.0, 38684860.0 -0.13
A/J m 35619310.0 492596.0   2   348318.0 0.0138 35270992.0, 35967628.0 -0.56
AKR/J m 30048162.0 0.0   1   0.0 0.0 30048162.0, 30048162.0 -1.32
AXB10/PgnJ m 41344576.0 0.0   1   0.0 0.0 41344576.0, 41344576.0 0.23
AXB12/PgnJ m 32013348.0 0.0   1   0.0 0.0 32013348.0, 32013348.0 -1.05
AXB13/PgnJ m 40382928.0 0.0   1   0.0 0.0 40382928.0, 40382928.0 0.1
AXB15/PgnJ m 39154564.0 0.0   1   0.0 0.0 39154564.0, 39154564.0 -0.07
AXB19a/PgnJ m 47119444.0 0.0   1   0.0 0.0 47119444.0, 47119444.0 1.02
AXB19b/PgnJ m 55469090.0 2543545.0   2   1798558.0 0.0459 53670532.0, 57267648.0 2.17
AXB19/PgnJ m 48294804.0 0.0   1   0.0 0.0 48294804.0, 48294804.0 1.19
AXB1/PgnJ m 47716580.0 0.0   1   0.0 0.0 47716580.0, 47716580.0 1.11
AXB23/PgnJ m 36205936.0 0.0   1   0.0 0.0 36205936.0, 36205936.0 -0.48
AXB24/PgnJ m 30923069.0 2128628.0   2   1505167.0 0.0688 29417902.0, 32428236.0 -1.2
AXB2/PgnJ m 35717788.0 0.0   1   0.0 0.0 35717788.0, 35717788.0 -0.54
AXB4/PgnJ m 50126780.0 0.0   1   0.0 0.0 50126780.0, 50126780.0 1.44
AXB5/PgnJ m 30393018.0 0.0   1   0.0 0.0 30393018.0, 30393018.0 -1.27
AXB6/PgnJ m 44693124.0 0.0   1   0.0 0.0 44693124.0, 44693124.0 0.69
AXB8/PgnJ m 42201880.0 0.0   1   0.0 0.0 42201880.0, 42201880.0 0.35
BALB/cJ m 38821899.0 1065096.0   3 614934.0 0.0274 37604596.0, 39582408.0 -0.12
BTBR T+ Itpr3tf/J m 31100572.0 0.0   1   0.0 0.0 31100572.0, 31100572.0 -1.18
BUB/BnJ m 48973892.0 0.0   1   0.0 0.0 48973892.0, 48973892.0 1.28
BXA11/PgnJ m 33958068.0 0.0   1   0.0 0.0 33958068.0, 33958068.0 -0.78
BXA12/PgnJ m 22954678.0 0.0   1   0.0 0.0 22954678.0, 22954678.0 -2.3
BXA13/PgnJ m 43951092.0 0.0   1   0.0 0.0 43951092.0, 43951092.0 0.59
BXA14/PgnJ m 50739648.0 0.0   1   0.0 0.0 50739648.0, 50739648.0 1.52
BXA16/PgnJ m 40875200.0 5759894.0   2   4072860.0 0.141 36802340.0, 44948060.0 0.17
BXA1/PgnJ m 40726372.0 0.0   1   0.0 0.0 40726372.0, 40726372.0 0.15
BXA24/PgnJ m 50130008.0 0.0   1   0.0 0.0 50130008.0, 50130008.0 1.44
BXA25/PgnJ m 29401222.0 0.0   1   0.0 0.0 29401222.0, 29401222.0 -1.41
BXA26/PgnJ m 44085564.0 0.0   1   0.0 0.0 44085564.0, 44085564.0 0.61
BXA2/PgnJ m 44631488.0 0.0   1   0.0 0.0 44631488.0, 44631488.0 0.68
BXA4/PgnJ m 31110044.0 0.0   1   0.0 0.0 31110044.0, 31110044.0 -1.18
BXA7/PgnJ m 44415664.0 0.0   1   0.0 0.0 44415664.0, 44415664.0 0.65
BXA8/PgnJ m 36006028.0 0.0   1   0.0 0.0 36006028.0, 36006028.0 -0.5
BXD11/TyJ m 32280316.0 0.0   1   0.0 0.0 32280316.0, 32280316.0 -1.02
BXD12/TyJ m 43039724.0 0.0   1   0.0 0.0 43039724.0, 43039724.0 0.46
BXD13/TyJ m 36014928.0 0.0   1   0.0 0.0 36014928.0, 36014928.0 -0.5
BXD14/TyJ m 43940172.0 0.0   1   0.0 0.0 43940172.0, 43940172.0 0.59
BXD15/TyJ m 42234468.0 0.0   1   0.0 0.0 42234468.0, 42234468.0 0.35
BXD18/TyJ m 30439892.0 0.0   1   0.0 0.0 30439892.0, 30439892.0 -1.27
BXD19/TyJ m 33065251.0 3170414.0   2   2241821.0 0.0959 30823430.0, 35307072.0 -0.91
BXD1/TyJ m 32380982.0 0.0   1   0.0 0.0 32380982.0, 32380982.0 -1.0
BXD20/TyJ m 38899628.0 0.0   1   0.0 0.0 38899628.0, 38899628.0 -0.11
BXD21/TyJ m 27597360.0 0.0   1   0.0 0.0 27597360.0, 27597360.0 -1.66
BXD22/TyJ m 51780488.0 0.0   1   0.0 0.0 51780488.0, 51780488.0 1.67
BXD24/TyJ m 36514312.0 0.0   1   0.0 0.0 36514312.0, 36514312.0 -0.43
BXD24/TyJ-Cep290rd16/J m 34027820.0 0.0   1   0.0 0.0 34027820.0, 34027820.0 -0.78
BXD28/TyJ m 39264372.0 5776649.0   2   4084708.0 0.147 35179664.0, 43349080.0 -0.06
BXD29-Tlr4lps-2J/J m 39665832.0 0.0   1   0.0 0.0 39665832.0, 39665832.0 0.0
BXD2/TyJ m 43300432.0 0.0   1   0.0 0.0 43300432.0, 43300432.0 0.5
BXD32/TyJ m 44598292.0 0.0   1   0.0 0.0 44598292.0, 44598292.0 0.68
BXD33/TyJ m 47973512.0 0.0   1   0.0 0.0 47973512.0, 47973512.0 1.14
BXD34/TyJ m 40992424.0 0.0   1   0.0 0.0 40992424.0, 40992424.0 0.18
BXD36/TyJ m 31509952.0 0.0   1   0.0 0.0 31509952.0, 31509952.0 -1.12
BXD38/TyJ m 32639584.0 0.0   1   0.0 0.0 32639584.0, 32639584.0 -0.97
BXD39/TyJ m 38455020.0 0.0   1   0.0 0.0 38455020.0, 38455020.0 -0.17
BXD40/TyJ m 37654140.0 0.0   1   0.0 0.0 37654140.0, 37654140.0 -0.28
BXD42/TyJ m 31687548.0 0.0   1   0.0 0.0 31687548.0, 31687548.0 -1.1
BXD5/TyJ m 43045536.0 0.0   1   0.0 0.0 43045536.0, 43045536.0 0.46
BXD6/TyJ m 32754390.0 0.0   1   0.0 0.0 32754390.0, 32754390.0 -0.95
BXD8/TyJ m 33169318.0 0.0   1   0.0 0.0 33169318.0, 33169318.0 -0.89
BXD9/TyJ m 34628264.0 0.0   1   0.0 0.0 34628264.0, 34628264.0 -0.69
BXH10/TyJ m 40393328.0 0.0   1   0.0 0.0 40393328.0, 40393328.0 0.1
BXH19/TyJ m 39213268.0 0.0   1   0.0 0.0 39213268.0, 39213268.0 -0.06
BXH20/KccJ m 42673892.0 0.0   1   0.0 0.0 42673892.0, 42673892.0 0.41
BXH22/KccJ m 39940764.0 0.0   1   0.0 0.0 39940764.0, 39940764.0 0.04
BXH2/TyJ m 43242840.0 0.0   1   0.0 0.0 43242840.0, 43242840.0 0.49
BXH4/TyJ m 42406042.0 4761230.0   2   3366698.0 0.112 39039344.0, 45772740.0 0.38
BXH6/TyJ m 48713552.0 0.0   1   0.0 0.0 48713552.0, 48713552.0 1.24
BXH7/TyJ m 37753096.0 0.0   1   0.0 0.0 37753096.0, 37753096.0 -0.26
BXH8/TyJ m 42437780.0 0.0   1   0.0 0.0 42437780.0, 42437780.0 0.38
BXH9/TyJ m 39289808.0 0.0   1   0.0 0.0 39289808.0, 39289808.0 -0.05
C3H/HeJ m 41902388.0 5010649.0   2   3543064.0 0.12 38359324.0, 45445452.0 0.31
C57BL/6J m 48924205.0 3804504.0   5 1701426.0 0.0778 42861512.0, 52519080.0 1.27
C57L/J m 27292334.0 0.0   1   0.0 0.0 27292334.0, 27292334.0 -1.7
C58/J m 72644944.0 0.0   1   0.0 0.0 72644944.0, 72644944.0 4.53
CAST/EiJ m 35619600.0 0.0   1   0.0 0.0 35619600.0, 35619600.0 -0.56
CBA/J m 34336980.0 0.0   1   0.0 0.0 34336980.0, 34336980.0 -0.73
CE/J m 41704388.0 0.0   1   0.0 0.0 41704388.0, 41704388.0 0.28
CXB11/HiAJ m 35599278.0 1487354.0   2   1051718.0 0.0418 34547560.0, 36650996.0 -0.56
CXB12/HiAJ m 50676182.0 2223424.0   2   1572198.0 0.0439 49103984.0, 52248380.0 1.51
CXB13/HiAJ m 50033477.0 3762526.0   3 2172295.0 0.0752 47547492.0, 54362164.0 1.43
CXB1/ByJ m 38154029.0 3405760.0   3 1966317.0 0.0893 34692344.0, 41500964.0 -0.21
CXB2/ByJ m 46171988.0 2305057.0   3 1330825.0 0.0499 43530148.0, 47773616.0 0.89
CXB3/ByJ m 39848272.0 1436049.0   2   1015440.0 0.036 38832832.0, 40863712.0 0.03
CXB4/ByJ m 41796804.0 2506858.0   2   1772616.0 0.06 40024188.0, 43569420.0 0.29
CXB6/ByJ m 39384169.0 4605057.0   3 2658731.0 0.117 34244340.0, 43134408.0 -0.04
CXB7/ByJ m 44051790.0 3026341.0   2   2139946.0 0.0687 41911844.0, 46191736.0 0.6
CXB8/HiAJ m 57486553.0 1752067.0   3 1011557.0 0.0305 56166688.0, 59474344.0 2.45
CXB9/HiAJ m 44806900.0 4388378.0   3 2533631.0 0.0979 40316784.0, 49085920.0 0.71
DBA/2J m 32222756.0 2531116.0   4 1265558.0 0.0786 29692474.0, 34492600.0 -1.02
FVB/NJ m 30753538.0 0.0   1   0.0 0.0 30753538.0, 30753538.0 -1.23
I/LnJ m 41062988.0 0.0   1   0.0 0.0 41062988.0, 41062988.0 0.19
KK/HlJ m 35995760.0 0.0   1   0.0 0.0 35995760.0, 35995760.0 -0.5
LG/J m 36384724.0 0.0   1   0.0 0.0 36384724.0, 36384724.0 -0.45
LP/J m 37966376.0 0.0   1   0.0 0.0 37966376.0, 37966376.0 -0.23
MA/MyJ m 33831212.0 0.0   1   0.0 0.0 33831212.0, 33831212.0 -0.8
NOD/ShiLtJ m 43077668.0 0.0   1   0.0 0.0 43077668.0, 43077668.0 0.47
NON/ShiLtJ m 38137664.0 0.0   1   0.0 0.0 38137664.0, 38137664.0 -0.21
NZW/LacJ m 33416578.0 0.0   1   0.0 0.0 33416578.0, 33416578.0 -0.86
PL/J m 43469272.0 0.0   1   0.0 0.0 43469272.0, 43469272.0 0.52
RIIIS/J m 32312942.0 0.0   1   0.0 0.0 32312942.0, 32312942.0 -1.01
SEA/GnJ m 35147344.0 0.0   1   0.0 0.0 35147344.0, 35147344.0 -0.62
SJL/J m 34354596.0 0.0   1   0.0 0.0 34354596.0, 34354596.0 -0.73
SM/J m 34122904.0 0.0   1   0.0 0.0 34122904.0, 34122904.0 -0.76
SWR/J m 44334708.0 0.0   1   0.0 0.0 44334708.0, 44334708.0 0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 35619310.0 2391375.2766 40479169.2756 30759450.7244
AXB19b/PgnJ m 55469090.0 2391375.2766 60328949.2756 50609230.7244
AXB24/PgnJ m 30923069.0 2391375.2766 35782928.2756 26063209.7244
BALB/cJ m 38821898.6667 1952549.7371 42789957.149 34853840.1843
BXA16/PgnJ m 40875200.0 2391375.2766 45735059.2756 36015340.7244
BXD19/TyJ m 33065251.0 2391375.2766 37925110.2756 28205391.7244
BXD28/TyJ m 39264372.0 2391375.2766 44124231.2756 34404512.7244
BXH4/TyJ m 42406042.0 2391375.2766 47265901.2756 37546182.7244
C3H/HeJ m 41902388.0 2391375.2766 46762247.2756 37042528.7244
C57BL/6J m 48924204.8 1512438.5229 51997849.6838 45850559.9162
CXB11/HiAJ m 35599278.0 2391375.2766 40459137.2756 30739418.7244
CXB12/HiAJ m 50676182.0 2391375.2766 55536041.2756 45816322.7244
CXB13/HiAJ m 50033477.3333 1952549.7371 54001535.8157 46065418.851
CXB1/ByJ m 38154029.3333 1952549.7371 42122087.8157 34185970.851
CXB2/ByJ m 46171988.0 1952549.7371 50140046.4824 42203929.5176
CXB3/ByJ m 39848272.0 2391375.2766 44708131.2756 34988412.7244
CXB4/ByJ m 41796804.0 2391375.2766 46656663.2756 36936944.7244
CXB6/ByJ m 39384169.3333 1952549.7371 43352227.8157 35416110.851
CXB7/ByJ m 44051790.0 2391375.2766 48911649.2756 39191930.7244
CXB8/HiAJ m 57486553.3333 1952549.7371 61454611.8157 53518494.851
CXB9/HiAJ m 44806900.0 1952549.7371 48774958.4824 40838841.5176
DBA/2J m 32222755.5 1690957.6745 35659194.9494 28786316.0506




  GWAS USING LINEAR MIXED MODELS