Project measure / variable:   HMDPpheno6   IV_carnitine

ID, description, units MPD:50170   IV_carnitine   liver isovalerylcarnitine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver isovalerylcarnitine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means198152   None
Median of the strain means146770   None
SD of the strain means± 144045
Coefficient of variation (CV)0.727
Min–max range of strain means32048   –   904134   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 257262371105.368 12250589100.2556 3.6584 0.0004
Residuals 33 110504231169.316 3348613065.7369


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 361946.0 0.0   1   0.0 0.0 361946.0, 361946.0 1.14
A/J m 97414.0 7788.0   2   5507.0 0.0799 91907.0, 102921.0 -0.7
AKR/J m 150353.0 0.0   1   0.0 0.0 150353.0, 150353.0 -0.33
AXB10/PgnJ m 113764.0 0.0   1   0.0 0.0 113764.0, 113764.0 -0.59
AXB12/PgnJ m 126923.0 0.0   1   0.0 0.0 126923.0, 126923.0 -0.49
AXB13/PgnJ m 58415.0 0.0   1   0.0 0.0 58415.0, 58415.0 -0.97
AXB15/PgnJ m 101638.0 0.0   1   0.0 0.0 101638.0, 101638.0 -0.67
AXB19a/PgnJ m 116883.0 0.0   1   0.0 0.0 116883.0, 116883.0 -0.56
AXB19b/PgnJ m 176470.0 44490.0   2   31459.0 0.252 145010.0, 207930.0 -0.15
AXB19/PgnJ m 131028.0 0.0   1   0.0 0.0 131028.0, 131028.0 -0.47
AXB1/PgnJ m 325328.0 0.0   1   0.0 0.0 325328.0, 325328.0 0.88
AXB23/PgnJ m 155816.0 0.0   1   0.0 0.0 155816.0, 155816.0 -0.29
AXB24/PgnJ m 82557.0 14276.0   2   10095.0 0.173 72462.0, 92651.0 -0.8
AXB2/PgnJ m 118986.0 0.0   1   0.0 0.0 118986.0, 118986.0 -0.55
AXB4/PgnJ m 107851.0 0.0   1   0.0 0.0 107851.0, 107851.0 -0.63
AXB5/PgnJ m 32048.0 0.0   1   0.0 0.0 32048.0, 32048.0 -1.15
AXB6/PgnJ m 117339.0 0.0   1   0.0 0.0 117339.0, 117339.0 -0.56
AXB8/PgnJ m 138660.0 0.0   1   0.0 0.0 138660.0, 138660.0 -0.41
BALB/cJ m 99161.0 29571.0   3 17073.0 0.298 65031.0, 117113.0 -0.69
BTBR T+ Itpr3tf/J m 605122.0 0.0   1   0.0 0.0 605122.0, 605122.0 2.83
BUB/BnJ m 402801.0 0.0   1   0.0 0.0 402801.0, 402801.0 1.42
BXA11/PgnJ m 165780.0 0.0   1   0.0 0.0 165780.0, 165780.0 -0.22
BXA12/PgnJ m 131090.0 0.0   1   0.0 0.0 131090.0, 131090.0 -0.47
BXA13/PgnJ m 111021.0 0.0   1   0.0 0.0 111021.0, 111021.0 -0.6
BXA14/PgnJ m 60647.0 0.0   1   0.0 0.0 60647.0, 60647.0 -0.95
BXA16/PgnJ m 188116.0 138636.0   2   98031.0 0.737 90085.0, 286146.0 -0.07
BXA1/PgnJ m 106585.0 0.0   1   0.0 0.0 106585.0, 106585.0 -0.64
BXA24/PgnJ m 77188.0 0.0   1   0.0 0.0 77188.0, 77188.0 -0.84
BXA25/PgnJ m 101398.0 0.0   1   0.0 0.0 101398.0, 101398.0 -0.67
BXA26/PgnJ m 95846.0 0.0   1   0.0 0.0 95846.0, 95846.0 -0.71
BXA2/PgnJ m 93187.0 0.0   1   0.0 0.0 93187.0, 93187.0 -0.73
BXA4/PgnJ m 132932.0 0.0   1   0.0 0.0 132932.0, 132932.0 -0.45
BXA7/PgnJ m 92785.0 0.0   1   0.0 0.0 92785.0, 92785.0 -0.73
BXA8/PgnJ m 97567.0 0.0   1   0.0 0.0 97567.0, 97567.0 -0.7
BXD11/TyJ m 167749.0 0.0   1   0.0 0.0 167749.0, 167749.0 -0.21
BXD12/TyJ m 413252.0 0.0   1   0.0 0.0 413252.0, 413252.0 1.49
BXD13/TyJ m 184989.0 0.0   1   0.0 0.0 184989.0, 184989.0 -0.09
BXD14/TyJ m 184850.0 0.0   1   0.0 0.0 184850.0, 184850.0 -0.09
BXD15/TyJ m 326091.0 0.0   1   0.0 0.0 326091.0, 326091.0 0.89
BXD18/TyJ m 148092.0 0.0   1   0.0 0.0 148092.0, 148092.0 -0.35
BXD19/TyJ m 215139.0 124637.0   2   88132.0 0.579 127007.0, 303271.0 0.12
BXD1/TyJ m 346599.0 0.0   1   0.0 0.0 346599.0, 346599.0 1.03
BXD20/TyJ m 333736.0 0.0   1   0.0 0.0 333736.0, 333736.0 0.94
BXD21/TyJ m 287236.0 0.0   1   0.0 0.0 287236.0, 287236.0 0.62
BXD22/TyJ m 186100.0 0.0   1   0.0 0.0 186100.0, 186100.0 -0.08
BXD24/TyJ m 229728.0 0.0   1   0.0 0.0 229728.0, 229728.0 0.22
BXD24/TyJ-Cep290rd16/J m 379953.0 0.0   1   0.0 0.0 379953.0, 379953.0 1.26
BXD28/TyJ m 121014.0 46623.0   2   32967.0 0.385 88047.0, 153981.0 -0.54
BXD29-Tlr4lps-2J/J m 400512.0 0.0   1   0.0 0.0 400512.0, 400512.0 1.4
BXD2/TyJ m 157008.0 0.0   1   0.0 0.0 157008.0, 157008.0 -0.29
BXD32/TyJ m 143024.0 0.0   1   0.0 0.0 143024.0, 143024.0 -0.38
BXD33/TyJ m 244402.0 0.0   1   0.0 0.0 244402.0, 244402.0 0.32
BXD34/TyJ m 234101.0 0.0   1   0.0 0.0 234101.0, 234101.0 0.25
BXD36/TyJ m 321527.0 0.0   1   0.0 0.0 321527.0, 321527.0 0.86
BXD38/TyJ m 189063.0 0.0   1   0.0 0.0 189063.0, 189063.0 -0.06
BXD39/TyJ m 177287.0 0.0   1   0.0 0.0 177287.0, 177287.0 -0.14
BXD40/TyJ m 278601.0 0.0   1   0.0 0.0 278601.0, 278601.0 0.56
BXD42/TyJ m 376781.0 0.0   1   0.0 0.0 376781.0, 376781.0 1.24
BXD5/TyJ m 115961.0 0.0   1   0.0 0.0 115961.0, 115961.0 -0.57
BXD6/TyJ m 325392.0 0.0   1   0.0 0.0 325392.0, 325392.0 0.88
BXD8/TyJ m 176296.0 0.0   1   0.0 0.0 176296.0, 176296.0 -0.15
BXD9/TyJ m 326091.0 0.0   1   0.0 0.0 326091.0, 326091.0 0.89
BXH10/TyJ m 136948.0 0.0   1   0.0 0.0 136948.0, 136948.0 -0.42
BXH19/TyJ m 95408.0 0.0   1   0.0 0.0 95408.0, 95408.0 -0.71
BXH20/KccJ m 145447.0 0.0   1   0.0 0.0 145447.0, 145447.0 -0.37
BXH22/KccJ m 305078.0 0.0   1   0.0 0.0 305078.0, 305078.0 0.74
BXH2/TyJ m 133832.0 0.0   1   0.0 0.0 133832.0, 133832.0 -0.45
BXH4/TyJ m 120785.0 18002.0   2   12729.0 0.149 108055.0, 133514.0 -0.54
BXH6/TyJ m 207866.0 0.0   1   0.0 0.0 207866.0, 207866.0 0.07
BXH7/TyJ m 600445.0 0.0   1   0.0 0.0 600445.0, 600445.0 2.79
BXH8/TyJ m 130940.0 0.0   1   0.0 0.0 130940.0, 130940.0 -0.47
BXH9/TyJ m 215950.0 0.0   1   0.0 0.0 215950.0, 215950.0 0.12
C3H/HeJ m 287686.0 36357.0   2   25708.0 0.126 261978.0, 313395.0 0.62
C57BL/6J m 82163.0 26222.0   5 11727.0 0.319 47113.0, 102125.0 -0.81
C57L/J m 132782.0 0.0   1   0.0 0.0 132782.0, 132782.0 -0.45
C58/J m 742624.0 0.0   1   0.0 0.0 742624.0, 742624.0 3.78
CAST/EiJ m 134741.0 0.0   1   0.0 0.0 134741.0, 134741.0 -0.44
CBA/J m 170395.0 0.0   1   0.0 0.0 170395.0, 170395.0 -0.19
CE/J m 239703.0 0.0   1   0.0 0.0 239703.0, 239703.0 0.29
CXB11/HiAJ m 187444.0 124046.0   2   87714.0 0.662 99730.0, 275158.0 -0.07
CXB12/HiAJ m 96238.0 17906.0   2   12662.0 0.186 83576.0, 108899.0 -0.71
CXB13/HiAJ m 98432.0 13180.0   3 7610.0 0.134 83874.0, 109554.0 -0.69
CXB1/ByJ m 70057.0 24488.0   3 14138.0 0.35 50144.0, 97399.0 -0.89
CXB2/ByJ m 89627.0 32858.0   3 18970.0 0.367 68026.0, 127440.0 -0.75
CXB3/ByJ m 108030.0 30443.0   2   21527.0 0.282 86503.0, 129556.0 -0.63
CXB4/ByJ m 72769.0 54126.0   2   38273.0 0.744 34497.0, 111042.0 -0.87
CXB6/ByJ m 73970.0 38014.0   3 21948.0 0.514 47795.0, 117574.0 -0.86
CXB7/ByJ m 72880.0 15400.0   2   10890.0 0.211 61990.0, 83770.0 -0.87
CXB8/HiAJ m 111180.0 78997.0   3 45609.0 0.711 42319.0, 197419.0 -0.6
CXB9/HiAJ m 59173.0 40051.0   2   28321.0 0.677 30852.0, 87493.0 -0.96
DBA/2J m 287539.0 90745.0   4 45373.0 0.316 159466.0, 372336.0 0.62
FVB/NJ m 309323.0 0.0   1   0.0 0.0 309323.0, 309323.0 0.77
I/LnJ m 131936.0 0.0   1   0.0 0.0 131936.0, 131936.0 -0.46
KK/HlJ m 63910.0 0.0   1   0.0 0.0 63910.0, 63910.0 -0.93
LG/J m 267317.0 0.0   1   0.0 0.0 267317.0, 267317.0 0.48
LP/J m 511585.0 0.0   1   0.0 0.0 511585.0, 511585.0 2.18
MA/MyJ m 75416.0 0.0   1   0.0 0.0 75416.0, 75416.0 -0.85
NOD/ShiLtJ m 80946.0 0.0   1   0.0 0.0 80946.0, 80946.0 -0.81
NON/ShiLtJ m 196233.0 0.0   1   0.0 0.0 196233.0, 196233.0 -0.01
NZW/LacJ m 170660.0 0.0   1   0.0 0.0 170660.0, 170660.0 -0.19
PL/J m 93943.0 0.0   1   0.0 0.0 93943.0, 93943.0 -0.72
RIIIS/J m 250456.0 0.0   1   0.0 0.0 250456.0, 250456.0 0.36
SEA/GnJ m 271563.0 0.0   1   0.0 0.0 271563.0, 271563.0 0.51
SJL/J m 103164.0 0.0   1   0.0 0.0 103164.0, 103164.0 -0.66
SM/J m 904134.0 0.0   1   0.0 0.0 904134.0, 904134.0 4.9
SWR/J m 298162.0 0.0   1   0.0 0.0 298162.0, 298162.0 0.69


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 97413.95 40918.2909 180662.8388 14165.0612
AXB19b/PgnJ m 176470.0 40918.2909 259718.8888 93221.1112
AXB24/PgnJ m 82556.6 40918.2909 165805.4888 0.0
BALB/cJ m 99160.6 33409.6446 167133.0331 31188.1669
BXA16/PgnJ m 188115.75 40918.2909 271364.6388 104866.8612
BXD19/TyJ m 215138.75 40918.2909 298387.6388 131889.8612
BXD28/TyJ m 121013.7 40918.2909 204262.5888 37764.8112
BXH4/TyJ m 120784.55 40918.2909 204033.4388 37535.6612
C3H/HeJ m 287686.45 40918.2909 370935.3388 204437.5612
C57BL/6J m 82162.82 25878.9995 134814.0403 29511.5997
CXB11/HiAJ m 187444.0 40918.2909 270692.8888 104195.1112
CXB12/HiAJ m 96237.5 40918.2909 179486.3888 12988.6112
CXB13/HiAJ m 98432.2333 33409.6446 166404.6664 30459.8002
CXB1/ByJ m 70056.7 33409.6446 138029.1331 2084.2669
CXB2/ByJ m 89627.3 33409.6446 157599.7331 21654.8669
CXB3/ByJ m 108029.75 40918.2909 191278.6388 24780.8612
CXB4/ByJ m 72769.25 40918.2909 156018.1388 0.0
CXB6/ByJ m 73970.0333 33409.6446 141942.4664 5997.6002
CXB7/ByJ m 72880.0 40918.2909 156128.8888 0.0
CXB8/HiAJ m 111179.7 33409.6446 179152.1331 43207.2669
CXB9/HiAJ m 59172.7 40918.2909 142421.5888 0.0
DBA/2J m 287539.1 28933.601 346404.9538 228673.2462




  GWAS USING LINEAR MIXED MODELS