Project measure / variable:   HMDPpheno6   Ile

ID, description, units MPD:50169   Ile   liver isoleucine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver isoleucine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means19057911   None
Median of the strain means19216273   None
SD of the strain means± 3607802
Coefficient of variation (CV)0.189
Min–max range of strain means12254998   –   33830852   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 612038637297141.0 29144697014149.6 7.4497 < 0.0001
Residuals 34 133014011779303.0 3912176817038.32


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 16961000.0 0.0   1   0.0 0.0 16961000.0, 16961000.0 -0.58
A/J m 16262170.0 428708.0   2   303142.0 0.0264 15959027.0, 16565312.0 -0.77
AKR/J m 14167661.0 0.0   1   0.0 0.0 14167661.0, 14167661.0 -1.36
AXB10/PgnJ m 19474142.0 0.0   1   0.0 0.0 19474142.0, 19474142.0 0.12
AXB12/PgnJ m 17584988.0 0.0   1   0.0 0.0 17584988.0, 17584988.0 -0.41
AXB13/PgnJ m 19208824.0 0.0   1   0.0 0.0 19208824.0, 19208824.0 0.04
AXB15/PgnJ m 18587356.0 0.0   1   0.0 0.0 18587356.0, 18587356.0 -0.13
AXB19a/PgnJ m 22659898.0 0.0   1   0.0 0.0 22659898.0, 22659898.0 1.0
AXB19b/PgnJ m 25449056.0 1911137.0   2   1351378.0 0.0751 24097678.0, 26800434.0 1.77
AXB19/PgnJ m 25385832.0 0.0   1   0.0 0.0 25385832.0, 25385832.0 1.75
AXB1/PgnJ m 21277852.0 0.0   1   0.0 0.0 21277852.0, 21277852.0 0.62
AXB23/PgnJ m 17378898.0 0.0   1   0.0 0.0 17378898.0, 17378898.0 -0.47
AXB24/PgnJ m 14080112.0 2135347.0   2   1509918.0 0.152 12570194.0, 15590031.0 -1.38
AXB2/PgnJ m 18174926.0 0.0   1   0.0 0.0 18174926.0, 18174926.0 -0.24
AXB4/PgnJ m 22671436.0 0.0   1   0.0 0.0 22671436.0, 22671436.0 1.0
AXB5/PgnJ m 14667364.0 0.0   1   0.0 0.0 14667364.0, 14667364.0 -1.22
AXB6/PgnJ m 21805018.0 0.0   1   0.0 0.0 21805018.0, 21805018.0 0.76
AXB8/PgnJ m 19838208.0 0.0   1   0.0 0.0 19838208.0, 19838208.0 0.22
BALB/cJ m 19011222.0 1457115.0   3 841266.0 0.0766 17332494.0, 19948504.0 -0.01
BTBR T+ Itpr3tf/J m 15564645.0 0.0   1   0.0 0.0 15564645.0, 15564645.0 -0.97
BUB/BnJ m 24712674.0 0.0   1   0.0 0.0 24712674.0, 24712674.0 1.57
BXA11/PgnJ m 16160520.0 0.0   1   0.0 0.0 16160520.0, 16160520.0 -0.8
BXA12/PgnJ m 12254998.0 0.0   1   0.0 0.0 12254998.0, 12254998.0 -1.89
BXA13/PgnJ m 19937092.0 0.0   1   0.0 0.0 19937092.0, 19937092.0 0.24
BXA14/PgnJ m 27574202.0 0.0   1   0.0 0.0 27574202.0, 27574202.0 2.36
BXA16/PgnJ m 19548747.0 585817.0   2   414235.0 0.03 19134512.0, 19962982.0 0.14
BXA1/PgnJ m 19561538.0 0.0   1   0.0 0.0 19561538.0, 19561538.0 0.14
BXA24/PgnJ m 25417746.0 0.0   1   0.0 0.0 25417746.0, 25417746.0 1.76
BXA25/PgnJ m 15187235.0 0.0   1   0.0 0.0 15187235.0, 15187235.0 -1.07
BXA26/PgnJ m 20567744.0 0.0   1   0.0 0.0 20567744.0, 20567744.0 0.42
BXA2/PgnJ m 22224692.0 0.0   1   0.0 0.0 22224692.0, 22224692.0 0.88
BXA4/PgnJ m 14970880.0 0.0   1   0.0 0.0 14970880.0, 14970880.0 -1.13
BXA7/PgnJ m 20195804.0 0.0   1   0.0 0.0 20195804.0, 20195804.0 0.32
BXA8/PgnJ m 17350864.0 0.0   1   0.0 0.0 17350864.0, 17350864.0 -0.47
BXD11/TyJ m 14758934.0 0.0   1   0.0 0.0 14758934.0, 14758934.0 -1.19
BXD12/TyJ m 19515436.0 0.0   1   0.0 0.0 19515436.0, 19515436.0 0.13
BXD13/TyJ m 19487350.0 0.0   1   0.0 0.0 19487350.0, 19487350.0 0.12
BXD14/TyJ m 21757682.0 0.0   1   0.0 0.0 21757682.0, 21757682.0 0.75
BXD15/TyJ m 20565542.0 0.0   1   0.0 0.0 20565542.0, 20565542.0 0.42
BXD18/TyJ m 14389856.0 0.0   1   0.0 0.0 14389856.0, 14389856.0 -1.29
BXD19/TyJ m 16255040.0 1149973.0   2   813154.0 0.0707 15441886.0, 17068194.0 -0.78
BXD1/TyJ m 15977793.0 0.0   1   0.0 0.0 15977793.0, 15977793.0 -0.85
BXD20/TyJ m 18232216.0 0.0   1   0.0 0.0 18232216.0, 18232216.0 -0.23
BXD21/TyJ m 12516504.0 0.0   1   0.0 0.0 12516504.0, 12516504.0 -1.81
BXD22/TyJ m 23417266.0 0.0   1   0.0 0.0 23417266.0, 23417266.0 1.21
BXD24/TyJ m 17239802.0 0.0   1   0.0 0.0 17239802.0, 17239802.0 -0.5
BXD24/TyJ-Cep290rd16/J m 16888078.0 0.0   1   0.0 0.0 16888078.0, 16888078.0 -0.6
BXD28/TyJ m 19892278.0 3374028.0   2   2385798.0 0.17 17506480.0, 22278076.0 0.23
BXD29-Tlr4lps-2J/J m 19223722.0 0.0   1   0.0 0.0 19223722.0, 19223722.0 0.05
BXD2/TyJ m 23146654.0 0.0   1   0.0 0.0 23146654.0, 23146654.0 1.13
BXD32/TyJ m 22128020.0 0.0   1   0.0 0.0 22128020.0, 22128020.0 0.85
BXD33/TyJ m 20816666.0 0.0   1   0.0 0.0 20816666.0, 20816666.0 0.49
BXD34/TyJ m 19807428.0 0.0   1   0.0 0.0 19807428.0, 19807428.0 0.21
BXD36/TyJ m 15033001.0 0.0   1   0.0 0.0 15033001.0, 15033001.0 -1.12
BXD38/TyJ m 15839588.0 0.0   1   0.0 0.0 15839588.0, 15839588.0 -0.89
BXD39/TyJ m 17408912.0 0.0   1   0.0 0.0 17408912.0, 17408912.0 -0.46
BXD40/TyJ m 19571494.0 0.0   1   0.0 0.0 19571494.0, 19571494.0 0.14
BXD42/TyJ m 12917320.0 0.0   1   0.0 0.0 12917320.0, 12917320.0 -1.7
BXD5/TyJ m 19389998.0 0.0   1   0.0 0.0 19389998.0, 19389998.0 0.09
BXD6/TyJ m 16223249.0 0.0   1   0.0 0.0 16223249.0, 16223249.0 -0.79
BXD8/TyJ m 14477097.0 0.0   1   0.0 0.0 14477097.0, 14477097.0 -1.27
BXD9/TyJ m 16126528.0 0.0   1   0.0 0.0 16126528.0, 16126528.0 -0.81
BXH10/TyJ m 22359064.0 0.0   1   0.0 0.0 22359064.0, 22359064.0 0.92
BXH19/TyJ m 18778846.0 0.0   1   0.0 0.0 18778846.0, 18778846.0 -0.08
BXH20/KccJ m 21784260.0 0.0   1   0.0 0.0 21784260.0, 21784260.0 0.76
BXH22/KccJ m 20815134.0 0.0   1   0.0 0.0 20815134.0, 20815134.0 0.49
BXH2/TyJ m 22363942.0 0.0   1   0.0 0.0 22363942.0, 22363942.0 0.92
BXH4/TyJ m 20239868.0 710077.0   2   502100.0 0.0351 19737768.0, 20741968.0 0.33
BXH6/TyJ m 24021764.0 0.0   1   0.0 0.0 24021764.0, 24021764.0 1.38
BXH7/TyJ m 17330760.0 0.0   1   0.0 0.0 17330760.0, 17330760.0 -0.48
BXH8/TyJ m 19855986.0 0.0   1   0.0 0.0 19855986.0, 19855986.0 0.22
BXH9/TyJ m 16986026.0 0.0   1   0.0 0.0 16986026.0, 16986026.0 -0.57
C3H/HeJ m 20183777.0 2982258.0   2   2108775.0 0.148 18075002.0, 22292552.0 0.31
C57BL/6J m 22794440.0 1724090.0   5 771036.0 0.0756 20412546.0, 25213046.0 1.04
C57L/J m 12277524.0 0.0   1   0.0 0.0 12277524.0, 12277524.0 -1.88
C58/J m 33830852.0 0.0   1   0.0 0.0 33830852.0, 33830852.0 4.09
CAST/EiJ m 16689157.0 0.0   1   0.0 0.0 16689157.0, 16689157.0 -0.66
CBA/J m 17633164.0 0.0   1   0.0 0.0 17633164.0, 17633164.0 -0.39
CE/J m 20866120.0 0.0   1   0.0 0.0 20866120.0, 20866120.0 0.5
CXB11/HiAJ m 16292970.0 240901.0   2   170342.0 0.0148 16122627.0, 16463312.0 -0.77
CXB12/HiAJ m 23943346.0 668807.0   2   472918.0 0.0279 23470428.0, 24416264.0 1.35
CXB13/HiAJ m 25678406.0 3487909.0   3 2013745.0 0.136 23496826.0, 29701096.0 1.84
CXB1/ByJ m 19418323.0 3108171.0   3 1794504.0 0.16 16824888.0, 22863598.0 0.1
CXB2/ByJ m 22519862.0 1345585.0   3 776874.0 0.0598 21100352.0, 23776738.0 0.96
CXB3/ByJ m 19718047.0 411294.0   2   290829.0 0.0209 19427218.0, 20008876.0 0.18
CXB4/ByJ m 20066350.0 2401835.0   2   1698354.0 0.12 18367996.0, 21764704.0 0.28
CXB6/ByJ m 18989379.0 2516329.0   3 1452803.0 0.133 16213621.0, 21121092.0 -0.02
CXB7/ByJ m 20475500.0 1331097.0   2   941228.0 0.065 19534272.0, 21416728.0 0.39
CXB8/HiAJ m 26178195.0 900844.0   3 520103.0 0.0344 25194020.0, 26961950.0 1.97
CXB9/HiAJ m 22467617.0 1655313.0   3 955696.0 0.0737 21137616.0, 24321476.0 0.95
DBA/2J m 15473051.0 1895452.0   4 947726.0 0.123 12973312.0, 17423286.0 -0.99
FVB/NJ m 16284079.0 0.0   1   0.0 0.0 16284079.0, 16284079.0 -0.77
I/LnJ m 18108798.0 0.0   1   0.0 0.0 18108798.0, 18108798.0 -0.26
KK/HlJ m 17988022.0 0.0   1   0.0 0.0 17988022.0, 17988022.0 -0.3
LG/J m 16395741.0 0.0   1   0.0 0.0 16395741.0, 16395741.0 -0.74
LP/J m 18536054.0 0.0   1   0.0 0.0 18536054.0, 18536054.0 -0.14
MA/MyJ m 14608964.0 0.0   1   0.0 0.0 14608964.0, 14608964.0 -1.23
NOD/ShiLtJ m 20393316.0 0.0   1   0.0 0.0 20393316.0, 20393316.0 0.37
NON/ShiLtJ m 18877722.0 0.0   1   0.0 0.0 18877722.0, 18877722.0 -0.05
NZW/LacJ m 15602817.0 0.0   1   0.0 0.0 15602817.0, 15602817.0 -0.96
PL/J m 20216346.0 0.0   1   0.0 0.0 20216346.0, 20216346.0 0.32
RIIIS/J m 16213963.0 0.0   1   0.0 0.0 16213963.0, 16213963.0 -0.79
SEA/GnJ m 16848714.0 0.0   1   0.0 0.0 16848714.0, 16848714.0 -0.61
SJL/J m 14320673.0 0.0   1   0.0 0.0 14320673.0, 14320673.0 -1.31
SM/J m 15730559.0 0.0   1   0.0 0.0 15730559.0, 15730559.0 -0.92
SWR/J m 21102240.0 0.0   1   0.0 0.0 21102240.0, 21102240.0 0.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 16262169.5 1398602.3053 19104471.3558 13419867.6442
AXB19b/PgnJ m 25449056.0 1398602.3053 28291357.8558 22606754.1442
AXB24/PgnJ m 14080112.5 1398602.3053 16922414.3558 11237810.6442
BALB/cJ m 19011222.0 1141954.0004 21331951.7472 16690492.2528
BXA16/PgnJ m 19548747.0 1398602.3053 22391048.8558 16706445.1442
BXD19/TyJ m 16255040.0 1398602.3053 19097341.8558 13412738.1442
BXD28/TyJ m 19892278.0 1398602.3053 22734579.8558 17049976.1442
BXH4/TyJ m 20239868.0 1398602.3053 23082169.8558 17397566.1442
C3H/HeJ m 20183777.0 1398602.3053 23026078.8558 17341475.1442
C57BL/6J m 22794440.4 884553.7651 24592069.9324 20996810.8676
CXB11/HiAJ m 16292969.5 1398602.3053 19135271.3558 13450667.6442
CXB12/HiAJ m 23943346.0 1398602.3053 26785647.8558 21101044.1442
CXB13/HiAJ m 25678406.0 1141954.0004 27999135.7472 23357676.2528
CXB1/ByJ m 19418322.6667 1141954.0004 21739052.4139 17097592.9195
CXB2/ByJ m 22519862.0 1141954.0004 24840591.7472 20199132.2528
CXB3/ByJ m 19718047.0 1398602.3053 22560348.8558 16875745.1442
CXB4/ByJ m 20066350.0 1398602.3053 22908651.8558 17224048.1442
CXB6/ByJ m 18989379.0 1141954.0004 21310108.7472 16668649.2528
CXB7/ByJ m 20475500.0 1398602.3053 23317801.8558 17633198.1442
CXB8/HiAJ m 26178195.3333 1141954.0004 28498925.0805 23857465.5861
CXB9/HiAJ m 22467616.6667 1141954.0004 24788346.4139 20146886.9195
DBA/2J m 15473051.0 988961.1743 17482861.9164 13463240.0836




  GWAS USING LINEAR MIXED MODELS