Project measure / variable:   HMDPpheno6   stachydrine

ID, description, units MPD:50166   stachydrine   liver stachydrine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   104 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver stachydrine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested104 strains
Mean of the strain means230327   None
Median of the strain means188226   None
SD of the strain means± 174562
Coefficient of variation (CV)0.758
Min–max range of strain means27265   –   1132335   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 800623792772.107 40031189638.6053 4.4822 0.0001
Residuals 32 285798984205.114 8931218256.4098


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 304660.0 0.0   1   0.0 0.0 304660.0, 304660.0 0.43
A/J m 473407.0 109633.0   2   77522.0 0.232 395885.0, 550929.0 1.39
AKR/J m 182331.0 0.0   1   0.0 0.0 182331.0, 182331.0 -0.27
AXB10/PgnJ m 244810.0 0.0   1   0.0 0.0 244810.0, 244810.0 0.08
AXB12/PgnJ m 134038.0 0.0   1   0.0 0.0 134038.0, 134038.0 -0.55
AXB13/PgnJ m 140014.0 0.0   1   0.0 0.0 140014.0, 140014.0 -0.52
AXB15/PgnJ m 197976.0 0.0   1   0.0 0.0 197976.0, 197976.0 -0.19
AXB19a/PgnJ m 357466.0 0.0   1   0.0 0.0 357466.0, 357466.0 0.73
AXB19b/PgnJ m 448068.0 209890.0   2   148415.0 0.468 299654.0, 596483.0 1.25
AXB19/PgnJ m 223623.0 0.0   1   0.0 0.0 223623.0, 223623.0 -0.04
AXB1/PgnJ m 104685.0 0.0   1   0.0 0.0 104685.0, 104685.0 -0.72
AXB23/PgnJ m 35835.0 0.0   1   0.0 0.0 35835.0, 35835.0 -1.11
AXB24/PgnJ m 91322.0 52701.0   2   37265.0 0.577 54057.0, 128587.0 -0.8
AXB2/PgnJ m 291642.0 0.0   1   0.0 0.0 291642.0, 291642.0 0.35
AXB4/PgnJ m 343577.0 0.0   1   0.0 0.0 343577.0, 343577.0 0.65
AXB5/PgnJ m 173419.0 0.0   1   0.0 0.0 173419.0, 173419.0 -0.33
AXB6/PgnJ m 65397.0 0.0   1   0.0 0.0 65397.0, 65397.0 -0.94
AXB8/PgnJ m 206175.0 0.0   1   0.0 0.0 206175.0, 206175.0 -0.14
BALB/cJ m 77052.0 58032.0   2   41035.0 0.753 36018.0, 118087.0 -0.88
BTBR T+ Itpr3tf/J m 228487.0 0.0   1   0.0 0.0 228487.0, 228487.0 -0.01
BUB/BnJ m 632766.0 0.0   1   0.0 0.0 632766.0, 632766.0 2.31
BXA11/PgnJ m 81767.0 0.0   1   0.0 0.0 81767.0, 81767.0 -0.85
BXA12/PgnJ m 345040.0 0.0   1   0.0 0.0 345040.0, 345040.0 0.66
BXA13/PgnJ m 62703.0 0.0   1   0.0 0.0 62703.0, 62703.0 -0.96
BXA14/PgnJ m 1132335.0 0.0   1   0.0 0.0 1132335.0, 1132335.0 5.17
BXA16/PgnJ m 230364.0 129477.0   2   91554.0 0.562 138811.0, 321918.0 0.0
BXA1/PgnJ m 62023.0 0.0   1   0.0 0.0 62023.0, 62023.0 -0.96
BXA24/PgnJ m 129766.0 0.0   1   0.0 0.0 129766.0, 129766.0 -0.58
BXA25/PgnJ m 169762.0 0.0   1   0.0 0.0 169762.0, 169762.0 -0.35
BXA26/PgnJ m 228633.0 0.0   1   0.0 0.0 228633.0, 228633.0 -0.01
BXA2/PgnJ m 109648.0 0.0   1   0.0 0.0 109648.0, 109648.0 -0.69
BXA4/PgnJ m 229325.0 0.0   1   0.0 0.0 229325.0, 229325.0 -0.01
BXA7/PgnJ m 508083.0 0.0   1   0.0 0.0 508083.0, 508083.0 1.59
BXA8/PgnJ m 40607.0 0.0   1   0.0 0.0 40607.0, 40607.0 -1.09
BXD11/TyJ m 175789.0 0.0   1   0.0 0.0 175789.0, 175789.0 -0.31
BXD13/TyJ m 63400.0 0.0   1   0.0 0.0 63400.0, 63400.0 -0.96
BXD14/TyJ m 27265.0 0.0   1   0.0 0.0 27265.0, 27265.0 -1.16
BXD15/TyJ m 84356.0 0.0   1   0.0 0.0 84356.0, 84356.0 -0.84
BXD18/TyJ m 43894.0 0.0   1   0.0 0.0 43894.0, 43894.0 -1.07
BXD19/TyJ m 68634.0 56214.0   2   39749.0 0.819 28884.0, 108383.0 -0.93
BXD1/TyJ m 242025.0 0.0   1   0.0 0.0 242025.0, 242025.0 0.07
BXD20/TyJ m 194120.0 0.0   1   0.0 0.0 194120.0, 194120.0 -0.21
BXD21/TyJ m 141414.0 0.0   1   0.0 0.0 141414.0, 141414.0 -0.51
BXD22/TyJ m 335670.0 0.0   1   0.0 0.0 335670.0, 335670.0 0.6
BXD24/TyJ m 59353.0 0.0   1   0.0 0.0 59353.0, 59353.0 -0.98
BXD24/TyJ-Cep290rd16/J m 31314.0 0.0   1   0.0 0.0 31314.0, 31314.0 -1.14
BXD28/TyJ m 86265.0 10230.0   2   7233.0 0.119 79031.0, 93498.0 -0.83
BXD29-Tlr4lps-2J/J m 318476.0 0.0   1   0.0 0.0 318476.0, 318476.0 0.5
BXD2/TyJ m 391498.0 0.0   1   0.0 0.0 391498.0, 391498.0 0.92
BXD32/TyJ m 168214.0 0.0   1   0.0 0.0 168214.0, 168214.0 -0.36
BXD33/TyJ m 238708.0 0.0   1   0.0 0.0 238708.0, 238708.0 0.05
BXD34/TyJ m 328570.0 0.0   1   0.0 0.0 328570.0, 328570.0 0.56
BXD36/TyJ m 28227.0 0.0   1   0.0 0.0 28227.0, 28227.0 -1.16
BXD38/TyJ m 172226.0 0.0   1   0.0 0.0 172226.0, 172226.0 -0.33
BXD39/TyJ m 121422.0 0.0   1   0.0 0.0 121422.0, 121422.0 -0.62
BXD40/TyJ m 62097.0 0.0   1   0.0 0.0 62097.0, 62097.0 -0.96
BXD42/TyJ m 247850.0 0.0   1   0.0 0.0 247850.0, 247850.0 0.1
BXD5/TyJ m 152831.0 0.0   1   0.0 0.0 152831.0, 152831.0 -0.44
BXD6/TyJ m 199460.0 0.0   1   0.0 0.0 199460.0, 199460.0 -0.18
BXD8/TyJ m 175789.0 0.0   1   0.0 0.0 175789.0, 175789.0 -0.31
BXH10/TyJ m 112110.0 0.0   1   0.0 0.0 112110.0, 112110.0 -0.68
BXH19/TyJ m 459961.0 0.0   1   0.0 0.0 459961.0, 459961.0 1.32
BXH20/KccJ m 250179.0 0.0   1   0.0 0.0 250179.0, 250179.0 0.11
BXH22/KccJ m 181817.0 0.0   1   0.0 0.0 181817.0, 181817.0 -0.28
BXH2/TyJ m 365310.0 0.0   1   0.0 0.0 365310.0, 365310.0 0.77
BXH4/TyJ m 110447.0 50741.0   2   35879.0 0.459 74567.0, 146326.0 -0.69
BXH6/TyJ m 360338.0 0.0   1   0.0 0.0 360338.0, 360338.0 0.74
BXH7/TyJ m 383241.0 0.0   1   0.0 0.0 383241.0, 383241.0 0.88
BXH8/TyJ m 75609.0 0.0   1   0.0 0.0 75609.0, 75609.0 -0.89
BXH9/TyJ m 59080.0 0.0   1   0.0 0.0 59080.0, 59080.0 -0.98
C3H/HeJ m 456735.0 83261.0   2   58874.0 0.182 397860.0, 515609.0 1.3
C57BL/6J m 181627.0 50246.0   5 22471.0 0.277 125389.0, 244112.0 -0.28
C57L/J m 116437.0 0.0   1   0.0 0.0 116437.0, 116437.0 -0.65
C58/J m 401991.0 0.0   1   0.0 0.0 401991.0, 401991.0 0.98
CAST/EiJ m 803369.0 0.0   1   0.0 0.0 803369.0, 803369.0 3.28
CBA/J m 149065.0 0.0   1   0.0 0.0 149065.0, 149065.0 -0.47
CE/J m 164540.0 0.0   1   0.0 0.0 164540.0, 164540.0 -0.38
CXB11/HiAJ m 278319.0 0.0   1   0.0 0.0 278319.0, 278319.0 0.27
CXB12/HiAJ m 220996.0 50720.0   2   35864.0 0.23 185132.0, 256860.0 -0.05
CXB13/HiAJ m 211473.0 123497.0   3 71301.0 0.584 79616.0, 324430.0 -0.11
CXB1/ByJ m 180977.0 20616.0   3 11903.0 0.114 157458.0, 195931.0 -0.28
CXB2/ByJ m 289394.0 94707.0   3 54679.0 0.327 209570.0, 394040.0 0.34
CXB3/ByJ m 94607.0 21461.0   2   15175.0 0.227 79432.0, 109782.0 -0.78
CXB4/ByJ m 124975.0 24300.0   2   17183.0 0.194 107792.0, 142158.0 -0.6
CXB6/ByJ m 95440.0 48880.0   3 28221.0 0.512 48153.0, 145770.0 -0.77
CXB7/ByJ m 259452.0 133253.0   2   94224.0 0.514 165228.0, 353676.0 0.17
CXB8/HiAJ m 345185.0 221521.0   3 127895.0 0.642 179353.0, 596761.0 0.66
CXB9/HiAJ m 53693.0 22665.0   3 13086.0 0.422 29275.0, 74059.0 -1.01
DBA/2J m 104390.0 55756.0   4 27878.0 0.534 45248.0, 166371.0 -0.72
FVB/NJ m 447031.0 0.0   1   0.0 0.0 447031.0, 447031.0 1.24
I/LnJ m 351526.0 0.0   1   0.0 0.0 351526.0, 351526.0 0.69
KK/HlJ m 119930.0 0.0   1   0.0 0.0 119930.0, 119930.0 -0.63
LG/J m 322035.0 0.0   1   0.0 0.0 322035.0, 322035.0 0.53
LP/J m 479564.0 0.0   1   0.0 0.0 479564.0, 479564.0 1.43
MA/MyJ m 164656.0 0.0   1   0.0 0.0 164656.0, 164656.0 -0.38
NOD/ShiLtJ m 548588.0 0.0   1   0.0 0.0 548588.0, 548588.0 1.82
NON/ShiLtJ m 226543.0 0.0   1   0.0 0.0 226543.0, 226543.0 -0.02
NZW/LacJ m 431631.0 0.0   1   0.0 0.0 431631.0, 431631.0 1.15
PL/J m 271551.0 0.0   1   0.0 0.0 271551.0, 271551.0 0.24
RIIIS/J m 92454.0 0.0   1   0.0 0.0 92454.0, 92454.0 -0.79
SEA/GnJ m 213218.0 0.0   1   0.0 0.0 213218.0, 213218.0 -0.1
SJL/J m 620529.0 0.0   1   0.0 0.0 620529.0, 620529.0 2.24
SM/J m 95764.0 0.0   1   0.0 0.0 95764.0, 95764.0 -0.77
SWR/J m 232526.0 0.0   1   0.0 0.0 232526.0, 232526.0 0.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 473406.8 66825.2133 609525.3051 337288.2949
AXB19b/PgnJ m 448068.45 66825.2133 584186.9551 311949.9449
AXB24/PgnJ m 91322.35 66825.2133 227440.8551 0.0
BALB/cJ m 77052.45 66825.2133 213170.9551 0.0
BXA16/PgnJ m 230364.35 66825.2133 366482.8551 94245.8449
BXD19/TyJ m 68633.85 66825.2133 204752.3551 0.0
BXD28/TyJ m 86264.75 66825.2133 222383.2551 0.0
BXH4/TyJ m 110446.55 66825.2133 246565.0551 0.0
C3H/HeJ m 456734.7 66825.2133 592853.2051 320616.1949
C57BL/6J m 181626.54 42263.9758 267715.4416 95537.6384
CXB12/HiAJ m 220996.0 66825.2133 357114.5051 84877.4949
CXB13/HiAJ m 211473.2333 54562.5582 322613.5273 100332.9393
CXB1/ByJ m 180976.6667 54562.5582 292116.9607 69836.3727
CXB2/ByJ m 289393.9333 54562.5582 400534.2273 178253.6393
CXB3/ByJ m 94606.6 66825.2133 230725.1051 0.0
CXB4/ByJ m 124975.05 66825.2133 261093.5551 0.0
CXB6/ByJ m 95439.6 54562.5582 206579.894 0.0
CXB7/ByJ m 259451.95 66825.2133 395570.4551 123333.4449
CXB8/HiAJ m 345185.3 54562.5582 456325.594 234045.006
CXB9/HiAJ m 53692.5333 54562.5582 164832.8273 0.0
DBA/2J m 104389.75 47252.5615 200640.068 8139.432




  GWAS USING LINEAR MIXED MODELS