Project measure / variable:   HMDPpheno6   Pro

ID, description, units MPD:50164   Pro   liver proline (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver proline (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means8578660   None
Median of the strain means8504975   None
SD of the strain means± 1846743
Coefficient of variation (CV)0.215
Min–max range of strain means3823301   –   13319635   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 177472483569077.0 8451070646146.53 11.6949 < 0.0001
Residuals 34 24569343992876.0 722627764496.354


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 9502911.0 0.0   1   0.0 0.0 9502911.0, 9502911.0 0.5
A/J m 7956259.0 497415.0   2   351726.0 0.0625 7604533.0, 8307984.0 -0.34
AKR/J m 7165372.0 0.0   1   0.0 0.0 7165372.0, 7165372.0 -0.77
AXB10/PgnJ m 9628922.0 0.0   1   0.0 0.0 9628922.0, 9628922.0 0.57
AXB12/PgnJ m 7022366.0 0.0   1   0.0 0.0 7022366.0, 7022366.0 -0.84
AXB13/PgnJ m 8744711.0 0.0   1   0.0 0.0 8744711.0, 8744711.0 0.09
AXB15/PgnJ m 8893272.0 0.0   1   0.0 0.0 8893272.0, 8893272.0 0.17
AXB19a/PgnJ m 10094502.0 0.0   1   0.0 0.0 10094502.0, 10094502.0 0.82
AXB19b/PgnJ m 11362360.0 1387744.0   2   981284.0 0.122 10381077.0, 12343644.0 1.51
AXB19/PgnJ m 10771001.0 0.0   1   0.0 0.0 10771001.0, 10771001.0 1.19
AXB1/PgnJ m 5491520.0 0.0   1   0.0 0.0 5491520.0, 5491520.0 -1.67
AXB23/PgnJ m 8303812.0 0.0   1   0.0 0.0 8303812.0, 8303812.0 -0.15
AXB24/PgnJ m 7561778.0 340204.0   2   240560.0 0.045 7321217.0, 7802338.0 -0.55
AXB2/PgnJ m 8188986.0 0.0   1   0.0 0.0 8188986.0, 8188986.0 -0.21
AXB4/PgnJ m 8654632.0 0.0   1   0.0 0.0 8654632.0, 8654632.0 0.04
AXB5/PgnJ m 6748875.0 0.0   1   0.0 0.0 6748875.0, 6748875.0 -0.99
AXB6/PgnJ m 10540896.0 0.0   1   0.0 0.0 10540896.0, 10540896.0 1.06
AXB8/PgnJ m 9476471.0 0.0   1   0.0 0.0 9476471.0, 9476471.0 0.49
BALB/cJ m 8564419.0 478149.0   3 276060.0 0.0558 8109866.0, 9063105.0 -0.01
BTBR T+ Itpr3tf/J m 6655891.0 0.0   1   0.0 0.0 6655891.0, 6655891.0 -1.04
BUB/BnJ m 11779764.0 0.0   1   0.0 0.0 11779764.0, 11779764.0 1.73
BXA11/PgnJ m 6977318.0 0.0   1   0.0 0.0 6977318.0, 6977318.0 -0.87
BXA12/PgnJ m 4278790.0 0.0   1   0.0 0.0 4278790.0, 4278790.0 -2.33
BXA13/PgnJ m 7659636.0 0.0   1   0.0 0.0 7659636.0, 7659636.0 -0.5
BXA14/PgnJ m 10822362.0 0.0   1   0.0 0.0 10822362.0, 10822362.0 1.21
BXA16/PgnJ m 9423272.0 3659.0   2   2587.0 0.000388 9420685.0, 9425859.0 0.46
BXA1/PgnJ m 8520433.0 0.0   1   0.0 0.0 8520433.0, 8520433.0 -0.03
BXA24/PgnJ m 11928439.0 0.0   1   0.0 0.0 11928439.0, 11928439.0 1.81
BXA25/PgnJ m 8037824.0 0.0   1   0.0 0.0 8037824.0, 8037824.0 -0.29
BXA26/PgnJ m 9712717.0 0.0   1   0.0 0.0 9712717.0, 9712717.0 0.61
BXA2/PgnJ m 10709614.0 0.0   1   0.0 0.0 10709614.0, 10709614.0 1.15
BXA4/PgnJ m 6523313.0 0.0   1   0.0 0.0 6523313.0, 6523313.0 -1.11
BXA7/PgnJ m 11319150.0 0.0   1   0.0 0.0 11319150.0, 11319150.0 1.48
BXA8/PgnJ m 8196130.0 0.0   1   0.0 0.0 8196130.0, 8196130.0 -0.21
BXD11/TyJ m 6274964.0 0.0   1   0.0 0.0 6274964.0, 6274964.0 -1.25
BXD12/TyJ m 9391576.0 0.0   1   0.0 0.0 9391576.0, 9391576.0 0.44
BXD13/TyJ m 9097196.0 0.0   1   0.0 0.0 9097196.0, 9097196.0 0.28
BXD14/TyJ m 9284563.0 0.0   1   0.0 0.0 9284563.0, 9284563.0 0.38
BXD15/TyJ m 9331836.0 0.0   1   0.0 0.0 9331836.0, 9331836.0 0.41
BXD18/TyJ m 7989087.0 0.0   1   0.0 0.0 7989087.0, 7989087.0 -0.32
BXD19/TyJ m 7645053.0 1212860.0   2   857621.0 0.159 6787432.0, 8502674.0 -0.51
BXD1/TyJ m 6442895.0 0.0   1   0.0 0.0 6442895.0, 6442895.0 -1.16
BXD20/TyJ m 6961794.0 0.0   1   0.0 0.0 6961794.0, 6961794.0 -0.88
BXD21/TyJ m 7220208.0 0.0   1   0.0 0.0 7220208.0, 7220208.0 -0.74
BXD22/TyJ m 8650311.0 0.0   1   0.0 0.0 8650311.0, 8650311.0 0.04
BXD24/TyJ m 7702169.0 0.0   1   0.0 0.0 7702169.0, 7702169.0 -0.47
BXD24/TyJ-Cep290rd16/J m 5874250.0 0.0   1   0.0 0.0 5874250.0, 5874250.0 -1.46
BXD28/TyJ m 9317484.0 1013232.0   2   716463.0 0.109 8601021.0, 10033947.0 0.4
BXD29-Tlr4lps-2J/J m 7836942.0 0.0   1   0.0 0.0 7836942.0, 7836942.0 -0.4
BXD2/TyJ m 10769842.0 0.0   1   0.0 0.0 10769842.0, 10769842.0 1.19
BXD32/TyJ m 12394455.0 0.0   1   0.0 0.0 12394455.0, 12394455.0 2.07
BXD33/TyJ m 9424522.0 0.0   1   0.0 0.0 9424522.0, 9424522.0 0.46
BXD34/TyJ m 7847292.0 0.0   1   0.0 0.0 7847292.0, 7847292.0 -0.4
BXD36/TyJ m 7859184.0 0.0   1   0.0 0.0 7859184.0, 7859184.0 -0.39
BXD38/TyJ m 6944211.0 0.0   1   0.0 0.0 6944211.0, 6944211.0 -0.89
BXD39/TyJ m 8691100.0 0.0   1   0.0 0.0 8691100.0, 8691100.0 0.06
BXD40/TyJ m 8865617.0 0.0   1   0.0 0.0 8865617.0, 8865617.0 0.16
BXD42/TyJ m 7117550.0 0.0   1   0.0 0.0 7117550.0, 7117550.0 -0.79
BXD5/TyJ m 9695102.0 0.0   1   0.0 0.0 9695102.0, 9695102.0 0.6
BXD6/TyJ m 7932706.0 0.0   1   0.0 0.0 7932706.0, 7932706.0 -0.35
BXD8/TyJ m 8277544.0 0.0   1   0.0 0.0 8277544.0, 8277544.0 -0.16
BXD9/TyJ m 8329192.0 0.0   1   0.0 0.0 8329192.0, 8329192.0 -0.14
BXH10/TyJ m 8539802.0 0.0   1   0.0 0.0 8539802.0, 8539802.0 -0.02
BXH19/TyJ m 8143265.0 0.0   1   0.0 0.0 8143265.0, 8143265.0 -0.24
BXH20/KccJ m 10390906.0 0.0   1   0.0 0.0 10390906.0, 10390906.0 0.98
BXH22/KccJ m 8711600.0 0.0   1   0.0 0.0 8711600.0, 8711600.0 0.07
BXH2/TyJ m 8506296.0 0.0   1   0.0 0.0 8506296.0, 8506296.0 -0.04
BXH4/TyJ m 8454245.0 341074.0   2   241176.0 0.0403 8213070.0, 8695421.0 -0.07
BXH6/TyJ m 9218173.0 0.0   1   0.0 0.0 9218173.0, 9218173.0 0.35
BXH7/TyJ m 7081721.0 0.0   1   0.0 0.0 7081721.0, 7081721.0 -0.81
BXH8/TyJ m 8842078.0 0.0   1   0.0 0.0 8842078.0, 8842078.0 0.14
BXH9/TyJ m 8011053.0 0.0   1   0.0 0.0 8011053.0, 8011053.0 -0.31
C3H/HeJ m 8678320.0 914090.0   2   646360.0 0.105 8031960.0, 9324679.0 0.05
C57BL/6J m 11980172.0 1058032.0   5 473166.0 0.0883 10123215.0, 12714533.0 1.84
C57L/J m 5324698.0 0.0   1   0.0 0.0 5324698.0, 5324698.0 -1.76
C58/J m 7909025.0 0.0   1   0.0 0.0 7909025.0, 7909025.0 -0.36
CAST/EiJ m 7352370.0 0.0   1   0.0 0.0 7352370.0, 7352370.0 -0.66
CBA/J m 8003778.0 0.0   1   0.0 0.0 8003778.0, 8003778.0 -0.31
CE/J m 11280780.0 0.0   1   0.0 0.0 11280780.0, 11280780.0 1.46
CXB11/HiAJ m 7928132.0 1396341.0   2   987362.0 0.176 6940770.0, 8915494.0 -0.35
CXB12/HiAJ m 12361524.0 252093.0   2   178256.0 0.0204 12183268.0, 12539781.0 2.05
CXB13/HiAJ m 10877381.0 1150216.0   3 664077.0 0.106 9549564.0, 11567228.0 1.24
CXB1/ByJ m 8540673.0 241921.0   3 139673.0 0.0283 8332181.0, 8805929.0 -0.02
CXB2/ByJ m 10120582.0 1071609.0   3 618694.0 0.106 9170735.0, 11282302.0 0.83
CXB3/ByJ m 9971931.0 32250.0   2   22804.0 0.00323 9949127.0, 9994735.0 0.75
CXB4/ByJ m 10033438.0 224957.0   2   159068.0 0.0224 9874369.0, 10192506.0 0.79
CXB6/ByJ m 10203061.0 1087530.0   3 627885.0 0.107 9349798.0, 11427613.0 0.88
CXB7/ByJ m 10392816.0 760874.0   2   538020.0 0.0732 9854796.0, 10930835.0 0.98
CXB8/HiAJ m 13319635.0 809063.0   3 467113.0 0.0607 12522500.0, 14140121.0 2.57
CXB9/HiAJ m 11714853.0 1041348.0   3 601222.0 0.0889 10548057.0, 12549937.0 1.7
DBA/2J m 6924751.0 340953.0   4 170476.0 0.0492 6554962.0, 7288512.0 -0.9
FVB/NJ m 7404068.0 0.0   1   0.0 0.0 7404068.0, 7404068.0 -0.64
I/LnJ m 6246382.0 0.0   1   0.0 0.0 6246382.0, 6246382.0 -1.26
KK/HlJ m 7758396.0 0.0   1   0.0 0.0 7758396.0, 7758396.0 -0.44
LG/J m 3823301.0 0.0   1   0.0 0.0 3823301.0, 3823301.0 -2.57
LP/J m 6262120.0 0.0   1   0.0 0.0 6262120.0, 6262120.0 -1.25
MA/MyJ m 5996444.0 0.0   1   0.0 0.0 5996444.0, 5996444.0 -1.4
NOD/ShiLtJ m 10646526.0 0.0   1   0.0 0.0 10646526.0, 10646526.0 1.12
NON/ShiLtJ m 10087418.0 0.0   1   0.0 0.0 10087418.0, 10087418.0 0.82
NZW/LacJ m 7596078.0 0.0   1   0.0 0.0 7596078.0, 7596078.0 -0.53
PL/J m 8503654.0 0.0   1   0.0 0.0 8503654.0, 8503654.0 -0.04
RIIIS/J m 6059860.0 0.0   1   0.0 0.0 6059860.0, 6059860.0 -1.36
SEA/GnJ m 8134762.0 0.0   1   0.0 0.0 8134762.0, 8134762.0 -0.24
SJL/J m 4708594.0 0.0   1   0.0 0.0 4708594.0, 4708594.0 -2.1
SM/J m 5695634.0 0.0   1   0.0 0.0 5695634.0, 5695634.0 -1.56
SWR/J m 11211329.0 0.0   1   0.0 0.0 11211329.0, 11211329.0 1.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 7956258.75 601093.9047 9177828.5374 6734688.9626
AXB19b/PgnJ m 11362360.5 601093.9047 12583930.2874 10140790.7126
AXB24/PgnJ m 7561777.5 601093.9047 8783347.2874 6340207.7126
BALB/cJ m 8564419.1667 490791.118 9561826.7214 7567011.6119
BXA16/PgnJ m 9423272.0 601093.9047 10644841.7874 8201702.2126
BXD19/TyJ m 7645052.75 601093.9047 8866622.5374 6423482.9626
BXD28/TyJ m 9317484.0 601093.9047 10539053.7874 8095914.2126
BXH4/TyJ m 8454245.25 601093.9047 9675815.0374 7232675.4626
C3H/HeJ m 8678319.5 601093.9047 9899889.2874 7456749.7126
C57BL/6J m 11980171.6 380165.1653 12752760.1698 11207583.0302
CXB11/HiAJ m 7928132.0 601093.9047 9149701.7874 6706562.2126
CXB12/HiAJ m 12361524.5 601093.9047 13583094.2874 11139954.7126
CXB13/HiAJ m 10877381.0 490791.118 11874788.5548 9879973.4452
CXB1/ByJ m 8540673.0 490791.118 9538080.5548 7543265.4452
CXB2/ByJ m 10120582.3333 490791.118 11117989.8881 9123174.7786
CXB3/ByJ m 9971931.0 601093.9047 11193500.7874 8750361.2126
CXB4/ByJ m 10033437.5 601093.9047 11255007.2874 8811867.7126
CXB6/ByJ m 10203061.0 490791.118 11200468.5548 9205653.4452
CXB7/ByJ m 10392815.5 601093.9047 11614385.2874 9171245.7126
CXB8/HiAJ m 13319635.3333 490791.118 14317042.8881 12322227.7786
CXB9/HiAJ m 11714852.6667 490791.118 12712260.2214 10717445.1119
DBA/2J m 6924751.25 425037.5761 7788531.5303 6060970.9697




  GWAS USING LINEAR MIXED MODELS