Project measure / variable:   HMDPpheno6   homostachydrine

ID, description, units MPD:50163   homostachydrine   liver homostachydrine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver homostachydrine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means216961   None
Median of the strain means181388   None
SD of the strain means± 149258
Coefficient of variation (CV)0.688
Min–max range of strain means37672   –   848398   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 500646601766.206 25032330088.3103 5.2721 < 0.0001
Residuals 33 156687504049.084 4748106183.3056


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 238940.0 0.0   1   0.0 0.0 238940.0, 238940.0 0.15
A/J m 428807.0 147063.0   2   103989.0 0.343 324818.0, 532796.0 1.42
AKR/J m 190657.0 0.0   1   0.0 0.0 190657.0, 190657.0 -0.18
AXB10/PgnJ m 134799.0 0.0   1   0.0 0.0 134799.0, 134799.0 -0.55
AXB12/PgnJ m 131012.0 0.0   1   0.0 0.0 131012.0, 131012.0 -0.58
AXB13/PgnJ m 114572.0 0.0   1   0.0 0.0 114572.0, 114572.0 -0.69
AXB15/PgnJ m 227160.0 0.0   1   0.0 0.0 227160.0, 227160.0 0.07
AXB19a/PgnJ m 302457.0 0.0   1   0.0 0.0 302457.0, 302457.0 0.57
AXB19b/PgnJ m 383316.0 37215.0   2   26315.0 0.0971 357001.0, 409631.0 1.11
AXB19/PgnJ m 181388.0 0.0   1   0.0 0.0 181388.0, 181388.0 -0.24
AXB1/PgnJ m 447239.0 0.0   1   0.0 0.0 447239.0, 447239.0 1.54
AXB23/PgnJ m 46335.0 0.0   1   0.0 0.0 46335.0, 46335.0 -1.14
AXB24/PgnJ m 104841.0 0.0   1   0.0 0.0 104841.0, 104841.0 -0.75
AXB2/PgnJ m 286959.0 0.0   1   0.0 0.0 286959.0, 286959.0 0.47
AXB4/PgnJ m 451298.0 0.0   1   0.0 0.0 451298.0, 451298.0 1.57
AXB5/PgnJ m 170602.0 0.0   1   0.0 0.0 170602.0, 170602.0 -0.31
AXB6/PgnJ m 91034.0 0.0   1   0.0 0.0 91034.0, 91034.0 -0.84
AXB8/PgnJ m 115712.0 0.0   1   0.0 0.0 115712.0, 115712.0 -0.68
BALB/cJ m 87928.0 50696.0   3 29269.0 0.577 57306.0, 146446.0 -0.86
BTBR T+ Itpr3tf/J m 292079.0 0.0   1   0.0 0.0 292079.0, 292079.0 0.5
BUB/BnJ m 588595.0 0.0   1   0.0 0.0 588595.0, 588595.0 2.49
BXA11/PgnJ m 48122.0 0.0   1   0.0 0.0 48122.0, 48122.0 -1.13
BXA12/PgnJ m 249310.0 0.0   1   0.0 0.0 249310.0, 249310.0 0.22
BXA13/PgnJ m 88112.0 0.0   1   0.0 0.0 88112.0, 88112.0 -0.86
BXA14/PgnJ m 388629.0 0.0   1   0.0 0.0 388629.0, 388629.0 1.15
BXA16/PgnJ m 262047.0 229984.0   2   162623.0 0.878 99424.0, 424670.0 0.3
BXA1/PgnJ m 50982.0 0.0   1   0.0 0.0 50982.0, 50982.0 -1.11
BXA24/PgnJ m 89839.0 0.0   1   0.0 0.0 89839.0, 89839.0 -0.85
BXA25/PgnJ m 143084.0 0.0   1   0.0 0.0 143084.0, 143084.0 -0.49
BXA26/PgnJ m 222934.0 0.0   1   0.0 0.0 222934.0, 222934.0 0.04
BXA2/PgnJ m 74250.0 0.0   1   0.0 0.0 74250.0, 74250.0 -0.96
BXA4/PgnJ m 185998.0 0.0   1   0.0 0.0 185998.0, 185998.0 -0.21
BXA7/PgnJ m 326557.0 0.0   1   0.0 0.0 326557.0, 326557.0 0.73
BXD11/TyJ m 226956.0 0.0   1   0.0 0.0 226956.0, 226956.0 0.07
BXD12/TyJ m 210256.0 0.0   1   0.0 0.0 210256.0, 210256.0 -0.04
BXD13/TyJ m 153758.0 0.0   1   0.0 0.0 153758.0, 153758.0 -0.42
BXD14/TyJ m 72538.0 0.0   1   0.0 0.0 72538.0, 72538.0 -0.97
BXD15/TyJ m 97584.0 0.0   1   0.0 0.0 97584.0, 97584.0 -0.8
BXD18/TyJ m 123074.0 0.0   1   0.0 0.0 123074.0, 123074.0 -0.63
BXD19/TyJ m 92362.0 34028.0   2   24061.0 0.368 68300.0, 116423.0 -0.83
BXD1/TyJ m 243976.0 0.0   1   0.0 0.0 243976.0, 243976.0 0.18
BXD20/TyJ m 159816.0 0.0   1   0.0 0.0 159816.0, 159816.0 -0.38
BXD21/TyJ m 224131.0 0.0   1   0.0 0.0 224131.0, 224131.0 0.05
BXD22/TyJ m 473472.0 0.0   1   0.0 0.0 473472.0, 473472.0 1.72
BXD24/TyJ m 58896.0 0.0   1   0.0 0.0 58896.0, 58896.0 -1.06
BXD24/TyJ-Cep290rd16/J m 42111.0 0.0   1   0.0 0.0 42111.0, 42111.0 -1.17
BXD28/TyJ m 119802.0 32870.0   2   23243.0 0.274 96559.0, 143045.0 -0.65
BXD29-Tlr4lps-2J/J m 386478.0 0.0   1   0.0 0.0 386478.0, 386478.0 1.14
BXD2/TyJ m 244571.0 0.0   1   0.0 0.0 244571.0, 244571.0 0.18
BXD32/TyJ m 227043.0 0.0   1   0.0 0.0 227043.0, 227043.0 0.07
BXD33/TyJ m 262890.0 0.0   1   0.0 0.0 262890.0, 262890.0 0.31
BXD34/TyJ m 342122.0 0.0   1   0.0 0.0 342122.0, 342122.0 0.84
BXD36/TyJ m 50886.0 0.0   1   0.0 0.0 50886.0, 50886.0 -1.11
BXD38/TyJ m 140628.0 0.0   1   0.0 0.0 140628.0, 140628.0 -0.51
BXD39/TyJ m 93475.0 0.0   1   0.0 0.0 93475.0, 93475.0 -0.83
BXD40/TyJ m 60168.0 0.0   1   0.0 0.0 60168.0, 60168.0 -1.05
BXD42/TyJ m 171054.0 0.0   1   0.0 0.0 171054.0, 171054.0 -0.31
BXD5/TyJ m 104756.0 0.0   1   0.0 0.0 104756.0, 104756.0 -0.75
BXD6/TyJ m 239608.0 0.0   1   0.0 0.0 239608.0, 239608.0 0.15
BXD8/TyJ m 149443.0 0.0   1   0.0 0.0 149443.0, 149443.0 -0.45
BXD9/TyJ m 37672.0 0.0   1   0.0 0.0 37672.0, 37672.0 -1.2
BXH10/TyJ m 98363.0 0.0   1   0.0 0.0 98363.0, 98363.0 -0.79
BXH19/TyJ m 242055.0 0.0   1   0.0 0.0 242055.0, 242055.0 0.17
BXH20/KccJ m 190721.0 0.0   1   0.0 0.0 190721.0, 190721.0 -0.18
BXH22/KccJ m 179338.0 0.0   1   0.0 0.0 179338.0, 179338.0 -0.25
BXH2/TyJ m 276847.0 0.0   1   0.0 0.0 276847.0, 276847.0 0.4
BXH4/TyJ m 108749.0 27007.0   2   19097.0 0.248 89652.0, 127845.0 -0.72
BXH6/TyJ m 219275.0 0.0   1   0.0 0.0 219275.0, 219275.0 0.02
BXH7/TyJ m 491378.0 0.0   1   0.0 0.0 491378.0, 491378.0 1.84
BXH8/TyJ m 93726.0 0.0   1   0.0 0.0 93726.0, 93726.0 -0.83
BXH9/TyJ m 66767.0 0.0   1   0.0 0.0 66767.0, 66767.0 -1.01
C3H/HeJ m 377878.0 144546.0   2   102209.0 0.383 275669.0, 480087.0 1.08
C57BL/6J m 158221.0 43708.0   5 19547.0 0.276 121596.0, 227908.0 -0.39
C57L/J m 139810.0 0.0   1   0.0 0.0 139810.0, 139810.0 -0.52
C58/J m 356688.0 0.0   1   0.0 0.0 356688.0, 356688.0 0.94
CAST/EiJ m 390449.0 0.0   1   0.0 0.0 390449.0, 390449.0 1.16
CBA/J m 223346.0 0.0   1   0.0 0.0 223346.0, 223346.0 0.04
CE/J m 129180.0 0.0   1   0.0 0.0 129180.0, 129180.0 -0.59
CXB11/HiAJ m 83856.0 69594.0   2   49210.0 0.83 34646.0, 133066.0 -0.89
CXB12/HiAJ m 185589.0 21194.0   2   14987.0 0.114 170602.0, 200576.0 -0.21
CXB13/HiAJ m 191736.0 46812.0   3 27027.0 0.244 147278.0, 240591.0 -0.17
CXB1/ByJ m 117880.0 46658.0   3 26938.0 0.396 68394.0, 161072.0 -0.66
CXB2/ByJ m 179209.0 53573.0   3 30930.0 0.299 125180.0, 232315.0 -0.25
CXB3/ByJ m 69959.0 37604.0   2   26590.0 0.538 43370.0, 96549.0 -0.98
CXB4/ByJ m 96271.0 19666.0   2   13906.0 0.204 82365.0, 110177.0 -0.81
CXB6/ByJ m 64817.0 11689.0   3 6749.0 0.18 52260.0, 75384.0 -1.02
CXB7/ByJ m 164586.0 36416.0   2   25750.0 0.221 138837.0, 190336.0 -0.35
CXB8/HiAJ m 177331.0 37939.0   3 21904.0 0.214 136052.0, 210674.0 -0.27
CXB9/HiAJ m 69990.0 18050.0   3 10421.0 0.258 53573.0, 89319.0 -0.98
DBA/2J m 213660.0 76245.0   4 38123.0 0.357 147016.0, 293012.0 -0.02
FVB/NJ m 848398.0 0.0   1   0.0 0.0 848398.0, 848398.0 4.23
I/LnJ m 294918.0 0.0   1   0.0 0.0 294918.0, 294918.0 0.52
KK/HlJ m 109328.0 0.0   1   0.0 0.0 109328.0, 109328.0 -0.72
LG/J m 272558.0 0.0   1   0.0 0.0 272558.0, 272558.0 0.37
LP/J m 577739.0 0.0   1   0.0 0.0 577739.0, 577739.0 2.42
MA/MyJ m 312236.0 0.0   1   0.0 0.0 312236.0, 312236.0 0.64
NOD/ShiLtJ m 598767.0 0.0   1   0.0 0.0 598767.0, 598767.0 2.56
NON/ShiLtJ m 364108.0 0.0   1   0.0 0.0 364108.0, 364108.0 0.99
NZW/LacJ m 359857.0 0.0   1   0.0 0.0 359857.0, 359857.0 0.96
PL/J m 213466.0 0.0   1   0.0 0.0 213466.0, 213466.0 -0.02
RIIIS/J m 90303.0 0.0   1   0.0 0.0 90303.0, 90303.0 -0.85
SEA/GnJ m 214448.0 0.0   1   0.0 0.0 214448.0, 214448.0 -0.02
SJL/J m 655124.0 0.0   1   0.0 0.0 655124.0, 655124.0 2.94
SM/J m 179071.0 0.0   1   0.0 0.0 179071.0, 179071.0 -0.25
SWR/J m 377747.0 0.0   1   0.0 0.0 377747.0, 377747.0 1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 428806.55 48724.2557 527936.7935 329676.3065
AXB19b/PgnJ m 383316.0 48724.2557 482446.2435 284185.7565
BALB/cJ m 87928.2333 39783.1882 168867.7382 6988.7284
BXA16/PgnJ m 262046.9 48724.2557 361177.1435 162916.6565
BXD19/TyJ m 92361.55 48724.2557 191491.7935 0.0
BXD28/TyJ m 119802.1 48724.2557 218932.3435 20671.8565
BXH4/TyJ m 108748.65 48724.2557 207878.8935 9618.4065
C3H/HeJ m 377878.05 48724.2557 477008.2935 278747.8065
C57BL/6J m 158220.88 30815.925 220916.3509 95525.4091
CXB11/HiAJ m 83856.15 48724.2557 182986.3935 0.0
CXB12/HiAJ m 185588.75 48724.2557 284718.9935 86458.5065
CXB13/HiAJ m 191735.5 39783.1882 272675.0049 110795.9951
CXB1/ByJ m 117880.2667 39783.1882 198819.7716 36940.7618
CXB2/ByJ m 179209.1667 39783.1882 260148.6716 98269.6618
CXB3/ByJ m 69959.3 48724.2557 169089.5435 0.0
CXB4/ByJ m 96270.8 48724.2557 195401.0435 0.0
CXB6/ByJ m 64816.6667 39783.1882 145756.1716 0.0
CXB7/ByJ m 164586.45 48724.2557 263716.6935 65456.2065
CXB8/HiAJ m 177331.1667 39783.1882 258270.6716 96391.6618
CXB9/HiAJ m 69990.4 39783.1882 150929.9049 0.0
DBA/2J m 213659.625 34453.2516 283755.2924 143563.9576




  GWAS USING LINEAR MIXED MODELS