Project measure / variable:   HMDPpheno6   citrulline

ID, description, units MPD:50162   citrulline   liver citrulline (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver citrulline (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means274720   None
Median of the strain means251802   None
SD of the strain means± 87710
Coefficient of variation (CV)0.319
Min–max range of strain means108541   –   725784   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 151065984712.559 7193618319.6457 1.2106 0.3027
Residuals 34 202039714835.509 5942344553.9856


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 165666.0 0.0   1   0.0 0.0 165666.0, 165666.0 -1.24
A/J m 237596.0 96970.0   2   68568.0 0.408 169028.0, 306164.0 -0.42
AKR/J m 238516.0 0.0   1   0.0 0.0 238516.0, 238516.0 -0.41
AXB10/PgnJ m 237046.0 0.0   1   0.0 0.0 237046.0, 237046.0 -0.43
AXB12/PgnJ m 298164.0 0.0   1   0.0 0.0 298164.0, 298164.0 0.27
AXB13/PgnJ m 229685.0 0.0   1   0.0 0.0 229685.0, 229685.0 -0.51
AXB15/PgnJ m 280935.0 0.0   1   0.0 0.0 280935.0, 280935.0 0.07
AXB19a/PgnJ m 226848.0 0.0   1   0.0 0.0 226848.0, 226848.0 -0.55
AXB19b/PgnJ m 228512.0 34860.0   2   24650.0 0.153 203862.0, 253162.0 -0.53
AXB19/PgnJ m 242242.0 0.0   1   0.0 0.0 242242.0, 242242.0 -0.37
AXB1/PgnJ m 602918.0 0.0   1   0.0 0.0 602918.0, 602918.0 3.74
AXB23/PgnJ m 236320.0 0.0   1   0.0 0.0 236320.0, 236320.0 -0.44
AXB24/PgnJ m 248884.0 42739.0   2   30221.0 0.172 218663.0, 279105.0 -0.29
AXB2/PgnJ m 444846.0 0.0   1   0.0 0.0 444846.0, 444846.0 1.94
AXB4/PgnJ m 358848.0 0.0   1   0.0 0.0 358848.0, 358848.0 0.96
AXB5/PgnJ m 188633.0 0.0   1   0.0 0.0 188633.0, 188633.0 -0.98
AXB6/PgnJ m 224773.0 0.0   1   0.0 0.0 224773.0, 224773.0 -0.57
AXB8/PgnJ m 214137.0 0.0   1   0.0 0.0 214137.0, 214137.0 -0.69
BALB/cJ m 202035.0 34855.0   3 20123.0 0.173 164990.0, 234181.0 -0.83
BTBR T+ Itpr3tf/J m 108541.0 0.0   1   0.0 0.0 108541.0, 108541.0 -1.89
BUB/BnJ m 308046.0 0.0   1   0.0 0.0 308046.0, 308046.0 0.38
BXA11/PgnJ m 227407.0 0.0   1   0.0 0.0 227407.0, 227407.0 -0.54
BXA12/PgnJ m 287601.0 0.0   1   0.0 0.0 287601.0, 287601.0 0.15
BXA13/PgnJ m 272113.0 0.0   1   0.0 0.0 272113.0, 272113.0 -0.03
BXA14/PgnJ m 221530.0 0.0   1   0.0 0.0 221530.0, 221530.0 -0.61
BXA16/PgnJ m 286880.0 48112.0   2   34021.0 0.168 252859.0, 320900.0 0.14
BXA1/PgnJ m 267814.0 0.0   1   0.0 0.0 267814.0, 267814.0 -0.08
BXA24/PgnJ m 244134.0 0.0   1   0.0 0.0 244134.0, 244134.0 -0.35
BXA25/PgnJ m 254815.0 0.0   1   0.0 0.0 254815.0, 254815.0 -0.23
BXA26/PgnJ m 294585.0 0.0   1   0.0 0.0 294585.0, 294585.0 0.23
BXA2/PgnJ m 230672.0 0.0   1   0.0 0.0 230672.0, 230672.0 -0.5
BXA4/PgnJ m 153097.0 0.0   1   0.0 0.0 153097.0, 153097.0 -1.39
BXA7/PgnJ m 167225.0 0.0   1   0.0 0.0 167225.0, 167225.0 -1.23
BXA8/PgnJ m 334320.0 0.0   1   0.0 0.0 334320.0, 334320.0 0.68
BXD11/TyJ m 270410.0 0.0   1   0.0 0.0 270410.0, 270410.0 -0.05
BXD12/TyJ m 348594.0 0.0   1   0.0 0.0 348594.0, 348594.0 0.84
BXD13/TyJ m 242183.0 0.0   1   0.0 0.0 242183.0, 242183.0 -0.37
BXD14/TyJ m 257570.0 0.0   1   0.0 0.0 257570.0, 257570.0 -0.2
BXD15/TyJ m 192027.0 0.0   1   0.0 0.0 192027.0, 192027.0 -0.94
BXD18/TyJ m 127520.0 0.0   1   0.0 0.0 127520.0, 127520.0 -1.68
BXD19/TyJ m 273724.0 55816.0   2   39468.0 0.204 234256.0, 313191.0 -0.01
BXD1/TyJ m 243366.0 0.0   1   0.0 0.0 243366.0, 243366.0 -0.36
BXD20/TyJ m 331485.0 0.0   1   0.0 0.0 331485.0, 331485.0 0.65
BXD21/TyJ m 211191.0 0.0   1   0.0 0.0 211191.0, 211191.0 -0.72
BXD22/TyJ m 245006.0 0.0   1   0.0 0.0 245006.0, 245006.0 -0.34
BXD24/TyJ m 199078.0 0.0   1   0.0 0.0 199078.0, 199078.0 -0.86
BXD24/TyJ-Cep290rd16/J m 243851.0 0.0   1   0.0 0.0 243851.0, 243851.0 -0.35
BXD28/TyJ m 245467.0 65005.0   2   45966.0 0.265 199501.0, 291432.0 -0.33
BXD29-Tlr4lps-2J/J m 330632.0 0.0   1   0.0 0.0 330632.0, 330632.0 0.64
BXD2/TyJ m 346012.0 0.0   1   0.0 0.0 346012.0, 346012.0 0.81
BXD32/TyJ m 327987.0 0.0   1   0.0 0.0 327987.0, 327987.0 0.61
BXD33/TyJ m 354011.0 0.0   1   0.0 0.0 354011.0, 354011.0 0.9
BXD34/TyJ m 257189.0 0.0   1   0.0 0.0 257189.0, 257189.0 -0.2
BXD36/TyJ m 372960.0 0.0   1   0.0 0.0 372960.0, 372960.0 1.12
BXD38/TyJ m 725784.0 0.0   1   0.0 0.0 725784.0, 725784.0 5.14
BXD39/TyJ m 233334.0 0.0   1   0.0 0.0 233334.0, 233334.0 -0.47
BXD40/TyJ m 474003.0 0.0   1   0.0 0.0 474003.0, 474003.0 2.27
BXD42/TyJ m 276830.0 0.0   1   0.0 0.0 276830.0, 276830.0 0.02
BXD5/TyJ m 204028.0 0.0   1   0.0 0.0 204028.0, 204028.0 -0.81
BXD6/TyJ m 279451.0 0.0   1   0.0 0.0 279451.0, 279451.0 0.05
BXD8/TyJ m 310614.0 0.0   1   0.0 0.0 310614.0, 310614.0 0.41
BXD9/TyJ m 218332.0 0.0   1   0.0 0.0 218332.0, 218332.0 -0.64
BXH10/TyJ m 308205.0 0.0   1   0.0 0.0 308205.0, 308205.0 0.38
BXH19/TyJ m 206766.0 0.0   1   0.0 0.0 206766.0, 206766.0 -0.77
BXH20/KccJ m 262815.0 0.0   1   0.0 0.0 262815.0, 262815.0 -0.14
BXH22/KccJ m 246061.0 0.0   1   0.0 0.0 246061.0, 246061.0 -0.33
BXH2/TyJ m 223873.0 0.0   1   0.0 0.0 223873.0, 223873.0 -0.58
BXH4/TyJ m 192864.0 1660.0   2   1174.0 0.00861 191691.0, 194038.0 -0.93
BXH6/TyJ m 336718.0 0.0   1   0.0 0.0 336718.0, 336718.0 0.71
BXH7/TyJ m 252302.0 0.0   1   0.0 0.0 252302.0, 252302.0 -0.26
BXH8/TyJ m 207529.0 0.0   1   0.0 0.0 207529.0, 207529.0 -0.77
BXH9/TyJ m 264910.0 0.0   1   0.0 0.0 264910.0, 264910.0 -0.11
C3H/HeJ m 247718.0 83446.0   2   59005.0 0.337 188713.0, 306724.0 -0.31
C57BL/6J m 360438.0 29230.0   5 13072.0 0.0811 318392.0, 395104.0 0.98
C57L/J m 331659.0 0.0   1   0.0 0.0 331659.0, 331659.0 0.65
C58/J m 586499.0 0.0   1   0.0 0.0 586499.0, 586499.0 3.55
CAST/EiJ m 307259.0 0.0   1   0.0 0.0 307259.0, 307259.0 0.37
CBA/J m 258206.0 0.0   1   0.0 0.0 258206.0, 258206.0 -0.19
CE/J m 246833.0 0.0   1   0.0 0.0 246833.0, 246833.0 -0.32
CXB11/HiAJ m 350564.0 146132.0   2   103331.0 0.417 247233.0, 453895.0 0.86
CXB12/HiAJ m 251303.0 5559.0   2   3931.0 0.0221 247372.0, 255234.0 -0.27
CXB13/HiAJ m 338108.0 123701.0   3 71419.0 0.366 226941.0, 471366.0 0.72
CXB1/ByJ m 243943.0 88299.0   3 50979.0 0.362 186011.0, 345570.0 -0.35
CXB2/ByJ m 314230.0 154072.0   3 88953.0 0.49 200613.0, 489599.0 0.45
CXB3/ByJ m 247031.0 42893.0   2   30330.0 0.174 216701.0, 277361.0 -0.32
CXB4/ByJ m 250101.0 47992.0   2   33936.0 0.192 216165.0, 284036.0 -0.28
CXB6/ByJ m 318841.0 102530.0   3 59196.0 0.322 200464.0, 379624.0 0.5
CXB7/ByJ m 324706.0 57697.0   2   40798.0 0.178 283908.0, 365504.0 0.57
CXB8/HiAJ m 327567.0 58972.0   3 34048.0 0.18 291176.0, 395608.0 0.6
CXB9/HiAJ m 250224.0 59987.0   3 34633.0 0.24 193687.0, 313150.0 -0.28
DBA/2J m 208939.0 56029.0   4 28014.0 0.268 139868.0, 272636.0 -0.75
FVB/NJ m 225839.0 0.0   1   0.0 0.0 225839.0, 225839.0 -0.56
I/LnJ m 286323.0 0.0   1   0.0 0.0 286323.0, 286323.0 0.13
KK/HlJ m 361260.0 0.0   1   0.0 0.0 361260.0, 361260.0 0.99
LG/J m 338252.0 0.0   1   0.0 0.0 338252.0, 338252.0 0.72
LP/J m 166631.0 0.0   1   0.0 0.0 166631.0, 166631.0 -1.23
MA/MyJ m 202343.0 0.0   1   0.0 0.0 202343.0, 202343.0 -0.83
NOD/ShiLtJ m 206884.0 0.0   1   0.0 0.0 206884.0, 206884.0 -0.77
NON/ShiLtJ m 275388.0 0.0   1   0.0 0.0 275388.0, 275388.0 0.01
NZW/LacJ m 283504.0 0.0   1   0.0 0.0 283504.0, 283504.0 0.1
PL/J m 256886.0 0.0   1   0.0 0.0 256886.0, 256886.0 -0.2
RIIIS/J m 349337.0 0.0   1   0.0 0.0 349337.0, 349337.0 0.85
SEA/GnJ m 193425.0 0.0   1   0.0 0.0 193425.0, 193425.0 -0.93
SJL/J m 226238.0 0.0   1   0.0 0.0 226238.0, 226238.0 -0.55
SM/J m 335947.0 0.0   1   0.0 0.0 335947.0, 335947.0 0.7
SWR/J m 237838.0 0.0   1   0.0 0.0 237838.0, 237838.0 -0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 237596.1 54508.4606 348370.6198 126821.5802
AXB19b/PgnJ m 228512.25 54508.4606 339286.7698 117737.7302
AXB24/PgnJ m 248883.8 54508.4606 359658.3198 138109.2802
BALB/cJ m 202035.1667 44505.9717 292482.1833 111588.15
BXA16/PgnJ m 286879.95 54508.4606 397654.4698 176105.4302
BXD19/TyJ m 273723.75 54508.4606 384498.2698 162949.2302
BXD28/TyJ m 245466.6 54508.4606 356241.1198 134692.0802
BXH4/TyJ m 192864.5 54508.4606 303639.0198 82089.9802
C3H/HeJ m 247718.5 54508.4606 358493.0198 136943.9802
C57BL/6J m 360438.36 34474.1774 430498.3178 290378.4022
CXB11/HiAJ m 350564.1 54508.4606 461338.6198 239789.5802
CXB12/HiAJ m 251302.9 54508.4606 362077.4198 140528.3802
CXB13/HiAJ m 338108.2667 44505.9717 428555.2833 247661.25
CXB1/ByJ m 243942.9 44505.9717 334389.9166 153495.8834
CXB2/ByJ m 314230.2667 44505.9717 404677.2833 223783.25
CXB3/ByJ m 247031.35 54508.4606 357805.8698 136256.8302
CXB4/ByJ m 250100.95 54508.4606 360875.4698 139326.4302
CXB6/ByJ m 318840.6333 44505.9717 409287.65 228393.6167
CXB7/ByJ m 324705.65 54508.4606 435480.1698 213931.1302
CXB8/HiAJ m 327567.2333 44505.9717 418014.25 237120.2167
CXB9/HiAJ m 250223.8667 44505.9717 340670.8833 159776.85
DBA/2J m 208938.875 38543.3021 287268.2891 130609.4609




  GWAS USING LINEAR MIXED MODELS