Project measure / variable:   HMDPpheno6   aminovalerate

ID, description, units MPD:50161   aminovalerate   liver 5-aminovalerate (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver 5-aminovalerate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means644414   None
Median of the strain means597992   None
SD of the strain means± 203497
Coefficient of variation (CV)0.316
Min–max range of strain means298716   –   1536038   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1389960391752.87 66188590083.47 3.9341 0.0002
Residuals 34 572027782165.81 16824346534.2885


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 513286.0 0.0   1   0.0 0.0 513286.0, 513286.0 -0.64
A/J m 650128.0 37513.0   2   26526.0 0.0577 623602.0, 676654.0 0.03
AKR/J m 646319.0 0.0   1   0.0 0.0 646319.0, 646319.0 0.01
AXB10/PgnJ m 539502.0 0.0   1   0.0 0.0 539502.0, 539502.0 -0.52
AXB12/PgnJ m 532873.0 0.0   1   0.0 0.0 532873.0, 532873.0 -0.55
AXB13/PgnJ m 490391.0 0.0   1   0.0 0.0 490391.0, 490391.0 -0.76
AXB15/PgnJ m 566381.0 0.0   1   0.0 0.0 566381.0, 566381.0 -0.38
AXB19a/PgnJ m 298716.0 0.0   1   0.0 0.0 298716.0, 298716.0 -1.7
AXB19b/PgnJ m 308734.0 14536.0   2   10278.0 0.0471 298456.0, 319013.0 -1.65
AXB19/PgnJ m 448467.0 0.0   1   0.0 0.0 448467.0, 448467.0 -0.96
AXB1/PgnJ m 910027.0 0.0   1   0.0 0.0 910027.0, 910027.0 1.31
AXB23/PgnJ m 563189.0 0.0   1   0.0 0.0 563189.0, 563189.0 -0.4
AXB24/PgnJ m 478995.0 95608.0   2   67605.0 0.2 411390.0, 546600.0 -0.81
AXB2/PgnJ m 815704.0 0.0   1   0.0 0.0 815704.0, 815704.0 0.84
AXB4/PgnJ m 910881.0 0.0   1   0.0 0.0 910881.0, 910881.0 1.31
AXB5/PgnJ m 520504.0 0.0   1   0.0 0.0 520504.0, 520504.0 -0.61
AXB6/PgnJ m 703385.0 0.0   1   0.0 0.0 703385.0, 703385.0 0.29
AXB8/PgnJ m 492852.0 0.0   1   0.0 0.0 492852.0, 492852.0 -0.74
BALB/cJ m 782694.0 79631.0   3 45975.0 0.102 691127.0, 835736.0 0.68
BTBR T+ Itpr3tf/J m 641050.0 0.0   1   0.0 0.0 641050.0, 641050.0 -0.02
BUB/BnJ m 859939.0 0.0   1   0.0 0.0 859939.0, 859939.0 1.06
BXA11/PgnJ m 525000.0 0.0   1   0.0 0.0 525000.0, 525000.0 -0.59
BXA12/PgnJ m 612375.0 0.0   1   0.0 0.0 612375.0, 612375.0 -0.16
BXA13/PgnJ m 367831.0 0.0   1   0.0 0.0 367831.0, 367831.0 -1.36
BXA14/PgnJ m 452639.0 0.0   1   0.0 0.0 452639.0, 452639.0 -0.94
BXA16/PgnJ m 650805.0 170668.0   2   120681.0 0.262 530125.0, 771486.0 0.03
BXA1/PgnJ m 550686.0 0.0   1   0.0 0.0 550686.0, 550686.0 -0.46
BXA24/PgnJ m 497840.0 0.0   1   0.0 0.0 497840.0, 497840.0 -0.72
BXA25/PgnJ m 555727.0 0.0   1   0.0 0.0 555727.0, 555727.0 -0.44
BXA26/PgnJ m 463247.0 0.0   1   0.0 0.0 463247.0, 463247.0 -0.89
BXA2/PgnJ m 491265.0 0.0   1   0.0 0.0 491265.0, 491265.0 -0.75
BXA4/PgnJ m 451409.0 0.0   1   0.0 0.0 451409.0, 451409.0 -0.95
BXA7/PgnJ m 1171653.0 0.0   1   0.0 0.0 1171653.0, 1171653.0 2.59
BXA8/PgnJ m 304866.0 0.0   1   0.0 0.0 304866.0, 304866.0 -1.67
BXD11/TyJ m 578350.0 0.0   1   0.0 0.0 578350.0, 578350.0 -0.32
BXD12/TyJ m 482003.0 0.0   1   0.0 0.0 482003.0, 482003.0 -0.8
BXD13/TyJ m 844673.0 0.0   1   0.0 0.0 844673.0, 844673.0 0.98
BXD14/TyJ m 386089.0 0.0   1   0.0 0.0 386089.0, 386089.0 -1.27
BXD15/TyJ m 615380.0 0.0   1   0.0 0.0 615380.0, 615380.0 -0.14
BXD18/TyJ m 847970.0 0.0   1   0.0 0.0 847970.0, 847970.0 1.0
BXD19/TyJ m 643119.0 275244.0   2   194627.0 0.428 448492.0, 837747.0 -0.01
BXD1/TyJ m 738524.0 0.0   1   0.0 0.0 738524.0, 738524.0 0.46
BXD20/TyJ m 758625.0 0.0   1   0.0 0.0 758625.0, 758625.0 0.56
BXD21/TyJ m 556453.0 0.0   1   0.0 0.0 556453.0, 556453.0 -0.43
BXD22/TyJ m 511611.0 0.0   1   0.0 0.0 511611.0, 511611.0 -0.65
BXD24/TyJ m 679813.0 0.0   1   0.0 0.0 679813.0, 679813.0 0.17
BXD24/TyJ-Cep290rd16/J m 866093.0 0.0   1   0.0 0.0 866093.0, 866093.0 1.09
BXD28/TyJ m 557636.0 55317.0   2   39115.0 0.0992 518521.0, 596751.0 -0.43
BXD29-Tlr4lps-2J/J m 384469.0 0.0   1   0.0 0.0 384469.0, 384469.0 -1.28
BXD2/TyJ m 716946.0 0.0   1   0.0 0.0 716946.0, 716946.0 0.36
BXD32/TyJ m 596978.0 0.0   1   0.0 0.0 596978.0, 596978.0 -0.23
BXD33/TyJ m 801909.0 0.0   1   0.0 0.0 801909.0, 801909.0 0.77
BXD34/TyJ m 687489.0 0.0   1   0.0 0.0 687489.0, 687489.0 0.21
BXD36/TyJ m 569636.0 0.0   1   0.0 0.0 569636.0, 569636.0 -0.37
BXD38/TyJ m 693247.0 0.0   1   0.0 0.0 693247.0, 693247.0 0.24
BXD39/TyJ m 748658.0 0.0   1   0.0 0.0 748658.0, 748658.0 0.51
BXD40/TyJ m 507175.0 0.0   1   0.0 0.0 507175.0, 507175.0 -0.67
BXD42/TyJ m 599006.0 0.0   1   0.0 0.0 599006.0, 599006.0 -0.22
BXD5/TyJ m 578003.0 0.0   1   0.0 0.0 578003.0, 578003.0 -0.33
BXD6/TyJ m 798860.0 0.0   1   0.0 0.0 798860.0, 798860.0 0.76
BXD8/TyJ m 579401.0 0.0   1   0.0 0.0 579401.0, 579401.0 -0.32
BXD9/TyJ m 458468.0 0.0   1   0.0 0.0 458468.0, 458468.0 -0.91
BXH10/TyJ m 1029028.0 0.0   1   0.0 0.0 1029028.0, 1029028.0 1.89
BXH19/TyJ m 844131.0 0.0   1   0.0 0.0 844131.0, 844131.0 0.98
BXH20/KccJ m 578321.0 0.0   1   0.0 0.0 578321.0, 578321.0 -0.32
BXH22/KccJ m 602853.0 0.0   1   0.0 0.0 602853.0, 602853.0 -0.2
BXH2/TyJ m 786404.0 0.0   1   0.0 0.0 786404.0, 786404.0 0.7
BXH4/TyJ m 417037.0 64094.0   2   45322.0 0.154 371715.0, 462358.0 -1.12
BXH6/TyJ m 577821.0 0.0   1   0.0 0.0 577821.0, 577821.0 -0.33
BXH7/TyJ m 723098.0 0.0   1   0.0 0.0 723098.0, 723098.0 0.39
BXH8/TyJ m 1071535.0 0.0   1   0.0 0.0 1071535.0, 1071535.0 2.1
BXH9/TyJ m 746278.0 0.0   1   0.0 0.0 746278.0, 746278.0 0.5
C3H/HeJ m 703950.0 267552.0   2   189188.0 0.38 514763.0, 893138.0 0.29
C57BL/6J m 435532.0 168259.0   5 75248.0 0.386 253666.0, 708687.0 -1.03
C57L/J m 543298.0 0.0   1   0.0 0.0 543298.0, 543298.0 -0.5
C58/J m 531906.0 0.0   1   0.0 0.0 531906.0, 531906.0 -0.55
CAST/EiJ m 349902.0 0.0   1   0.0 0.0 349902.0, 349902.0 -1.45
CBA/J m 745788.0 0.0   1   0.0 0.0 745788.0, 745788.0 0.5
CE/J m 468551.0 0.0   1   0.0 0.0 468551.0, 468551.0 -0.86
CXB11/HiAJ m 574229.0 12139.0   2   8583.0 0.0211 565646.0, 582813.0 -0.34
CXB12/HiAJ m 711638.0 127471.0   2   90136.0 0.179 621502.0, 801773.0 0.33
CXB13/HiAJ m 758855.0 118193.0   3 68239.0 0.156 625320.0, 850031.0 0.56
CXB1/ByJ m 551674.0 124836.0   3 72074.0 0.226 431375.0, 680600.0 -0.46
CXB2/ByJ m 659193.0 92853.0   3 53609.0 0.141 577966.0, 760414.0 0.07
CXB3/ByJ m 589495.0 69855.0   2   49395.0 0.119 540100.0, 638890.0 -0.27
CXB4/ByJ m 603528.0 122812.0   2   86842.0 0.203 516687.0, 690370.0 -0.2
CXB6/ByJ m 574071.0 134763.0   3 77805.0 0.235 424718.0, 686578.0 -0.35
CXB7/ByJ m 482165.0 68439.0   2   48393.0 0.142 433771.0, 530558.0 -0.8
CXB8/HiAJ m 527182.0 58887.0   3 33998.0 0.112 486603.0, 594723.0 -0.58
CXB9/HiAJ m 1079094.0 188301.0   3 108716.0 0.174 928437.0, 1290195.0 2.14
DBA/2J m 595914.0 81930.0   4 40965.0 0.137 503188.0, 694195.0 -0.24
FVB/NJ m 1246237.0 0.0   1   0.0 0.0 1246237.0, 1246237.0 2.96
I/LnJ m 694086.0 0.0   1   0.0 0.0 694086.0, 694086.0 0.24
KK/HlJ m 614443.0 0.0   1   0.0 0.0 614443.0, 614443.0 -0.15
LG/J m 632224.0 0.0   1   0.0 0.0 632224.0, 632224.0 -0.06
LP/J m 870485.0 0.0   1   0.0 0.0 870485.0, 870485.0 1.11
MA/MyJ m 587982.0 0.0   1   0.0 0.0 587982.0, 587982.0 -0.28
NOD/ShiLtJ m 934766.0 0.0   1   0.0 0.0 934766.0, 934766.0 1.43
NON/ShiLtJ m 477049.0 0.0   1   0.0 0.0 477049.0, 477049.0 -0.82
NZW/LacJ m 605748.0 0.0   1   0.0 0.0 605748.0, 605748.0 -0.19
PL/J m 618295.0 0.0   1   0.0 0.0 618295.0, 618295.0 -0.13
RIIIS/J m 733925.0 0.0   1   0.0 0.0 733925.0, 733925.0 0.44
SEA/GnJ m 429950.0 0.0   1   0.0 0.0 429950.0, 429950.0 -1.05
SJL/J m 1082236.0 0.0   1   0.0 0.0 1082236.0, 1082236.0 2.15
SM/J m 1536038.0 0.0   1   0.0 0.0 1536038.0, 1536038.0 4.38
SWR/J m 825987.0 0.0   1   0.0 0.0 825987.0, 825987.0 0.89


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 650127.95 91717.9005 836521.1496 463734.7504
AXB19b/PgnJ m 308734.35 91717.9005 495127.5496 122341.1504
AXB24/PgnJ m 478994.85 91717.9005 665388.0496 292601.6504
BALB/cJ m 782693.9667 74887.3521 934883.3769 630504.5565
BXA16/PgnJ m 650805.45 91717.9005 837198.6496 464412.2504
BXD19/TyJ m 643119.45 91717.9005 829512.6496 456726.2504
BXD28/TyJ m 557636.15 91717.9005 744029.3496 371242.9504
BXH4/TyJ m 417036.65 91717.9005 603429.8496 230643.4504
C3H/HeJ m 703950.25 91717.9005 890343.4496 517557.0504
C57BL/6J m 435531.88 58007.4935 553417.2902 317646.4698
CXB11/HiAJ m 574229.45 91717.9005 760622.6496 387836.2504
CXB12/HiAJ m 711637.55 91717.9005 898030.7496 525244.3504
CXB13/HiAJ m 758854.8667 74887.3521 911044.2769 606665.4565
CXB1/ByJ m 551673.6 74887.3521 703863.0102 399484.1898
CXB2/ByJ m 659192.9667 74887.3521 811382.3769 507003.5565
CXB3/ByJ m 589494.8 91717.9005 775887.9996 403101.6004
CXB4/ByJ m 603528.35 91717.9005 789921.5496 417135.1504
CXB6/ByJ m 574071.0333 74887.3521 726260.4435 421881.6231
CXB7/ByJ m 482164.7 91717.9005 668557.8996 295771.5004
CXB8/HiAJ m 527182.4333 74887.3521 679371.8435 374993.0231
CXB9/HiAJ m 1079093.6333 74887.3521 1231283.0435 926904.2231
DBA/2J m 595913.875 64854.3494 727713.7704 464113.9796




  GWAS USING LINEAR MIXED MODELS