Project measure / variable:   HMDPpheno6   urea

ID, description, units MPD:50159   urea   liver urea (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver urea (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1921942   None
Median of the strain means1720313   None
SD of the strain means± 1093801
Coefficient of variation (CV)0.569
Min–max range of strain means623512   –   8772504   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 45771412694457.3 2179591080688.44 1.3477 0.2142
Residuals 34 54985716154905.8 1617226945732.52


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1263956.0 0.0   1   0.0 0.0 1263956.0, 1263956.0 -0.6
A/J m 2122832.0 682500.0   2   482600.0 0.322 1640232.0, 2605432.0 0.18
AKR/J m 753306.0 0.0   1   0.0 0.0 753306.0, 753306.0 -1.07
AXB10/PgnJ m 1080016.0 0.0   1   0.0 0.0 1080016.0, 1080016.0 -0.77
AXB12/PgnJ m 1135374.0 0.0   1   0.0 0.0 1135374.0, 1135374.0 -0.72
AXB13/PgnJ m 1171113.0 0.0   1   0.0 0.0 1171113.0, 1171113.0 -0.69
AXB15/PgnJ m 2354132.0 0.0   1   0.0 0.0 2354132.0, 2354132.0 0.4
AXB19a/PgnJ m 4034074.0 0.0   1   0.0 0.0 4034074.0, 4034074.0 1.93
AXB19b/PgnJ m 4814239.0 4241466.0   2   2999169.0 0.881 1815070.0, 7813408.0 2.64
AXB19/PgnJ m 3459385.0 0.0   1   0.0 0.0 3459385.0, 3459385.0 1.41
AXB1/PgnJ m 3765204.0 0.0   1   0.0 0.0 3765204.0, 3765204.0 1.69
AXB23/PgnJ m 1037941.0 0.0   1   0.0 0.0 1037941.0, 1037941.0 -0.81
AXB24/PgnJ m 1353815.0 397973.0   2   281409.0 0.294 1072406.0, 1635225.0 -0.52
AXB2/PgnJ m 1674962.0 0.0   1   0.0 0.0 1674962.0, 1674962.0 -0.23
AXB4/PgnJ m 1766497.0 0.0   1   0.0 0.0 1766497.0, 1766497.0 -0.14
AXB5/PgnJ m 623512.0 0.0   1   0.0 0.0 623512.0, 623512.0 -1.19
AXB6/PgnJ m 1099522.0 0.0   1   0.0 0.0 1099522.0, 1099522.0 -0.75
AXB8/PgnJ m 1263674.0 0.0   1   0.0 0.0 1263674.0, 1263674.0 -0.6
BALB/cJ m 1847701.0 826007.0   3 476896.0 0.447 1259002.0, 2791945.0 -0.07
BTBR T+ Itpr3tf/J m 2264383.0 0.0   1   0.0 0.0 2264383.0, 2264383.0 0.31
BUB/BnJ m 2331689.0 0.0   1   0.0 0.0 2331689.0, 2331689.0 0.37
BXA11/PgnJ m 774859.0 0.0   1   0.0 0.0 774859.0, 774859.0 -1.05
BXA12/PgnJ m 1339956.0 0.0   1   0.0 0.0 1339956.0, 1339956.0 -0.53
BXA13/PgnJ m 1509876.0 0.0   1   0.0 0.0 1509876.0, 1509876.0 -0.38
BXA14/PgnJ m 2331321.0 0.0   1   0.0 0.0 2331321.0, 2331321.0 0.37
BXA16/PgnJ m 1905074.0 209279.0   2   147983.0 0.11 1757092.0, 2053057.0 -0.02
BXA1/PgnJ m 947264.0 0.0   1   0.0 0.0 947264.0, 947264.0 -0.89
BXA24/PgnJ m 3442434.0 0.0   1   0.0 0.0 3442434.0, 3442434.0 1.39
BXA25/PgnJ m 1307187.0 0.0   1   0.0 0.0 1307187.0, 1307187.0 -0.56
BXA26/PgnJ m 1694291.0 0.0   1   0.0 0.0 1694291.0, 1694291.0 -0.21
BXA2/PgnJ m 1857147.0 0.0   1   0.0 0.0 1857147.0, 1857147.0 -0.06
BXA4/PgnJ m 1657549.0 0.0   1   0.0 0.0 1657549.0, 1657549.0 -0.24
BXA7/PgnJ m 2980766.0 0.0   1   0.0 0.0 2980766.0, 2980766.0 0.97
BXA8/PgnJ m 1538694.0 0.0   1   0.0 0.0 1538694.0, 1538694.0 -0.35
BXD11/TyJ m 1038183.0 0.0   1   0.0 0.0 1038183.0, 1038183.0 -0.81
BXD12/TyJ m 1224319.0 0.0   1   0.0 0.0 1224319.0, 1224319.0 -0.64
BXD13/TyJ m 629601.0 0.0   1   0.0 0.0 629601.0, 629601.0 -1.18
BXD14/TyJ m 2637366.0 0.0   1   0.0 0.0 2637366.0, 2637366.0 0.65
BXD15/TyJ m 2004389.0 0.0   1   0.0 0.0 2004389.0, 2004389.0 0.08
BXD18/TyJ m 1110926.0 0.0   1   0.0 0.0 1110926.0, 1110926.0 -0.74
BXD19/TyJ m 1660790.0 100324.0   2   70940.0 0.0604 1589850.0, 1731730.0 -0.24
BXD1/TyJ m 1749143.0 0.0   1   0.0 0.0 1749143.0, 1749143.0 -0.16
BXD20/TyJ m 2414023.0 0.0   1   0.0 0.0 2414023.0, 2414023.0 0.45
BXD21/TyJ m 1619874.0 0.0   1   0.0 0.0 1619874.0, 1619874.0 -0.28
BXD22/TyJ m 2176588.0 0.0   1   0.0 0.0 2176588.0, 2176588.0 0.23
BXD24/TyJ m 1331959.0 0.0   1   0.0 0.0 1331959.0, 1331959.0 -0.54
BXD24/TyJ-Cep290rd16/J m 1041931.0 0.0   1   0.0 0.0 1041931.0, 1041931.0 -0.8
BXD28/TyJ m 1147776.0 95551.0   2   67564.0 0.0832 1080212.0, 1215340.0 -0.71
BXD29-Tlr4lps-2J/J m 3171550.0 0.0   1   0.0 0.0 3171550.0, 3171550.0 1.14
BXD2/TyJ m 2519608.0 0.0   1   0.0 0.0 2519608.0, 2519608.0 0.55
BXD32/TyJ m 2994430.0 0.0   1   0.0 0.0 2994430.0, 2994430.0 0.98
BXD33/TyJ m 2793543.0 0.0   1   0.0 0.0 2793543.0, 2793543.0 0.8
BXD34/TyJ m 1414130.0 0.0   1   0.0 0.0 1414130.0, 1414130.0 -0.46
BXD36/TyJ m 1028231.0 0.0   1   0.0 0.0 1028231.0, 1028231.0 -0.82
BXD38/TyJ m 869155.0 0.0   1   0.0 0.0 869155.0, 869155.0 -0.96
BXD39/TyJ m 2210457.0 0.0   1   0.0 0.0 2210457.0, 2210457.0 0.26
BXD40/TyJ m 1547406.0 0.0   1   0.0 0.0 1547406.0, 1547406.0 -0.34
BXD42/TyJ m 2111578.0 0.0   1   0.0 0.0 2111578.0, 2111578.0 0.17
BXD5/TyJ m 2517352.0 0.0   1   0.0 0.0 2517352.0, 2517352.0 0.54
BXD6/TyJ m 1729332.0 0.0   1   0.0 0.0 1729332.0, 1729332.0 -0.18
BXD8/TyJ m 1454427.0 0.0   1   0.0 0.0 1454427.0, 1454427.0 -0.43
BXD9/TyJ m 1166910.0 0.0   1   0.0 0.0 1166910.0, 1166910.0 -0.69
BXH10/TyJ m 898401.0 0.0   1   0.0 0.0 898401.0, 898401.0 -0.94
BXH19/TyJ m 2958867.0 0.0   1   0.0 0.0 2958867.0, 2958867.0 0.95
BXH20/KccJ m 2096603.0 0.0   1   0.0 0.0 2096603.0, 2096603.0 0.16
BXH22/KccJ m 1131601.0 0.0   1   0.0 0.0 1131601.0, 1131601.0 -0.72
BXH2/TyJ m 1657645.0 0.0   1   0.0 0.0 1657645.0, 1657645.0 -0.24
BXH4/TyJ m 2453286.0 576833.0   2   407882.0 0.235 2045404.0, 2861169.0 0.49
BXH6/TyJ m 8772504.0 0.0   1   0.0 0.0 8772504.0, 8772504.0 6.26
BXH7/TyJ m 1475036.0 0.0   1   0.0 0.0 1475036.0, 1475036.0 -0.41
BXH8/TyJ m 1915165.0 0.0   1   0.0 0.0 1915165.0, 1915165.0 -0.01
BXH9/TyJ m 1397706.0 0.0   1   0.0 0.0 1397706.0, 1397706.0 -0.48
C3H/HeJ m 1984742.0 108969.0   2   77053.0 0.0549 1907689.0, 2061795.0 0.06
C57BL/6J m 2066387.0 683302.0   5 305582.0 0.331 1021544.0, 2691316.0 0.13
C57L/J m 1051649.0 0.0   1   0.0 0.0 1051649.0, 1051649.0 -0.8
C58/J m 4564098.0 0.0   1   0.0 0.0 4564098.0, 4564098.0 2.42
CAST/EiJ m 1947521.0 0.0   1   0.0 0.0 1947521.0, 1947521.0 0.02
CBA/J m 649072.0 0.0   1   0.0 0.0 649072.0, 649072.0 -1.16
CE/J m 2041544.0 0.0   1   0.0 0.0 2041544.0, 2041544.0 0.11
CXB11/HiAJ m 4728992.0 4737919.0   2   3350214.0 1.0 1378777.0, 8079206.0 2.57
CXB12/HiAJ m 1145107.0 648134.0   2   458300.0 0.566 686808.0, 1603407.0 -0.71
CXB13/HiAJ m 2437833.0 927304.0   3 535379.0 0.38 1899919.0, 3508588.0 0.47
CXB1/ByJ m 2111121.0 543231.0   3 313635.0 0.257 1491479.0, 2505394.0 0.17
CXB2/ByJ m 1150563.0 632088.0   3 364936.0 0.549 546238.0, 1807168.0 -0.71
CXB3/ByJ m 2051295.0 26592.0   2   18804.0 0.013 2032492.0, 2070099.0 0.12
CXB4/ByJ m 2594149.0 2086112.0   2   1475104.0 0.804 1119045.0, 4069252.0 0.61
CXB6/ByJ m 1726213.0 481316.0   3 277888.0 0.279 1417913.0, 2280836.0 -0.18
CXB7/ByJ m 2220387.0 250252.0   2   176955.0 0.113 2043432.0, 2397342.0 0.27
CXB8/HiAJ m 2421122.0 869481.0   3 501995.0 0.359 1496720.0, 3222598.0 0.46
CXB9/HiAJ m 1275402.0 278707.0   3 160912.0 0.219 987180.0, 1543504.0 -0.59
DBA/2J m 925365.0 263836.0   4 131918.0 0.285 670507.0, 1266251.0 -0.91
FVB/NJ m 1714413.0 0.0   1   0.0 0.0 1714413.0, 1714413.0 -0.19
I/LnJ m 3194276.0 0.0   1   0.0 0.0 3194276.0, 3194276.0 1.16
KK/HlJ m 2334594.0 0.0   1   0.0 0.0 2334594.0, 2334594.0 0.38
LG/J m 1846282.0 0.0   1   0.0 0.0 1846282.0, 1846282.0 -0.07
LP/J m 1101680.0 0.0   1   0.0 0.0 1101680.0, 1101680.0 -0.75
MA/MyJ m 1189759.0 0.0   1   0.0 0.0 1189759.0, 1189759.0 -0.67
NOD/ShiLtJ m 670999.0 0.0   1   0.0 0.0 670999.0, 670999.0 -1.14
NON/ShiLtJ m 2276000.0 0.0   1   0.0 0.0 2276000.0, 2276000.0 0.32
NZW/LacJ m 1695084.0 0.0   1   0.0 0.0 1695084.0, 1695084.0 -0.21
PL/J m 2369338.0 0.0   1   0.0 0.0 2369338.0, 2369338.0 0.41
RIIIS/J m 1251875.0 0.0   1   0.0 0.0 1251875.0, 1251875.0 -0.61
SEA/GnJ m 939273.0 0.0   1   0.0 0.0 939273.0, 939273.0 -0.9
SJL/J m 1970456.0 0.0   1   0.0 0.0 1970456.0, 1970456.0 0.04
SM/J m 1843712.0 0.0   1   0.0 0.0 1843712.0, 1843712.0 -0.07
SWR/J m 1660042.0 0.0   1   0.0 0.0 1660042.0, 1660042.0 -0.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 2122832.3 899229.3772 3950286.2645 295378.3355
AXB19b/PgnJ m 4814239.25 899229.3772 6641693.2145 2986785.2855
AXB24/PgnJ m 1353815.1 899229.3772 3181269.0645 0.0
BALB/cJ m 1847700.5667 734217.712 3339810.4805 355590.6529
BXA16/PgnJ m 1905074.4 899229.3772 3732528.3645 77620.4355
BXD19/TyJ m 1660789.85 899229.3772 3488243.8145 0.0
BXD28/TyJ m 1147776.0 899229.3772 2975229.9645 0.0
BXH4/TyJ m 2453286.4 899229.3772 4280740.3645 625832.4355
C3H/HeJ m 1984742.05 899229.3772 3812196.0145 157288.0855
C57BL/6J m 2066386.58 568722.5942 3222169.9494 910603.2106
CXB11/HiAJ m 4728991.65 899229.3772 6556445.6145 2901537.6855
CXB12/HiAJ m 1145107.35 899229.3772 2972561.3145 0.0
CXB13/HiAJ m 2437833.4667 734217.712 3929943.3805 945723.5529
CXB1/ByJ m 2111121.3 734217.712 3603231.2138 619011.3862
CXB2/ByJ m 1150563.4333 734217.712 2642673.3471 0.0
CXB3/ByJ m 2051295.35 899229.3772 3878749.3145 223841.3855
CXB4/ByJ m 2594148.55 899229.3772 4421602.5145 766694.5855
CXB6/ByJ m 1726212.7 734217.712 3218322.6138 234102.7862
CXB7/ByJ m 2220386.9 899229.3772 4047840.8645 392932.9355
CXB8/HiAJ m 2421121.6 734217.712 3913231.5138 929011.6862
CXB9/HiAJ m 1275402.5 734217.712 2767512.4138 0.0
DBA/2J m 925365.3 635851.1905 2217570.3906 0.0




  GWAS USING LINEAR MIXED MODELS