Project measure / variable:   HMDPpheno6   ornithine

ID, description, units MPD:50158   ornithine   liver ornithine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno6 - liver ornithine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means4979149   None
Median of the strain means4675338   None
SD of the strain means± 2213683
Coefficient of variation (CV)0.445
Min–max range of strain means2051604   –   19733550   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 208851590918978.0 9945313853284.66 3.4612 0.0006
Residuals 34 97695531769567.7 2873397993222.58


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 4081704.0 0.0   1   0.0 0.0 4081704.0, 4081704.0 -0.41
A/J m 4489280.0 367313.0   2   259729.0 0.0818 4229551.0, 4749010.0 -0.22
AKR/J m 3695117.0 0.0   1   0.0 0.0 3695117.0, 3695117.0 -0.58
AXB10/PgnJ m 4573362.0 0.0   1   0.0 0.0 4573362.0, 4573362.0 -0.18
AXB12/PgnJ m 4836334.0 0.0   1   0.0 0.0 4836334.0, 4836334.0 -0.06
AXB13/PgnJ m 5150690.0 0.0   1   0.0 0.0 5150690.0, 5150690.0 0.08
AXB15/PgnJ m 3263430.0 0.0   1   0.0 0.0 3263430.0, 3263430.0 -0.78
AXB19a/PgnJ m 4704813.0 0.0   1   0.0 0.0 4704813.0, 4704813.0 -0.12
AXB19b/PgnJ m 7698525.0 849265.0   2   600521.0 0.11 7098004.0, 8299046.0 1.23
AXB19/PgnJ m 5280596.0 0.0   1   0.0 0.0 5280596.0, 5280596.0 0.14
AXB1/PgnJ m 19733550.0 0.0   1   0.0 0.0 19733550.0, 19733550.0 6.67
AXB23/PgnJ m 4008429.0 0.0   1   0.0 0.0 4008429.0, 4008429.0 -0.44
AXB24/PgnJ m 3181936.0 708985.0   2   501328.0 0.223 2680608.0, 3683264.0 -0.81
AXB2/PgnJ m 5832066.0 0.0   1   0.0 0.0 5832066.0, 5832066.0 0.39
AXB4/PgnJ m 7638784.0 0.0   1   0.0 0.0 7638784.0, 7638784.0 1.2
AXB5/PgnJ m 2660224.0 0.0   1   0.0 0.0 2660224.0, 2660224.0 -1.05
AXB6/PgnJ m 5887492.0 0.0   1   0.0 0.0 5887492.0, 5887492.0 0.41
AXB8/PgnJ m 4097004.0 0.0   1   0.0 0.0 4097004.0, 4097004.0 -0.4
BALB/cJ m 5793926.0 1556233.0   3 898492.0 0.269 4541493.0, 7536126.0 0.37
BTBR T+ Itpr3tf/J m 4053163.0 0.0   1   0.0 0.0 4053163.0, 4053163.0 -0.42
BUB/BnJ m 4263586.0 0.0   1   0.0 0.0 4263586.0, 4263586.0 -0.32
BXA11/PgnJ m 3436061.0 0.0   1   0.0 0.0 3436061.0, 3436061.0 -0.7
BXA12/PgnJ m 2162147.0 0.0   1   0.0 0.0 2162147.0, 2162147.0 -1.27
BXA13/PgnJ m 5981471.0 0.0   1   0.0 0.0 5981471.0, 5981471.0 0.45
BXA14/PgnJ m 4868394.0 0.0   1   0.0 0.0 4868394.0, 4868394.0 -0.05
BXA16/PgnJ m 3210031.0 607463.0   2   429541.0 0.189 2780490.0, 3639572.0 -0.8
BXA1/PgnJ m 7572996.0 0.0   1   0.0 0.0 7572996.0, 7572996.0 1.17
BXA24/PgnJ m 4787129.0 0.0   1   0.0 0.0 4787129.0, 4787129.0 -0.09
BXA25/PgnJ m 3802895.0 0.0   1   0.0 0.0 3802895.0, 3802895.0 -0.53
BXA26/PgnJ m 4587154.0 0.0   1   0.0 0.0 4587154.0, 4587154.0 -0.18
BXA2/PgnJ m 5242224.0 0.0   1   0.0 0.0 5242224.0, 5242224.0 0.12
BXA4/PgnJ m 3455726.0 0.0   1   0.0 0.0 3455726.0, 3455726.0 -0.69
BXA7/PgnJ m 6723499.0 0.0   1   0.0 0.0 6723499.0, 6723499.0 0.79
BXA8/PgnJ m 3158299.0 0.0   1   0.0 0.0 3158299.0, 3158299.0 -0.82
BXD11/TyJ m 4935022.0 0.0   1   0.0 0.0 4935022.0, 4935022.0 -0.02
BXD12/TyJ m 4414966.0 0.0   1   0.0 0.0 4414966.0, 4414966.0 -0.25
BXD13/TyJ m 3513968.0 0.0   1   0.0 0.0 3513968.0, 3513968.0 -0.66
BXD14/TyJ m 7819332.0 0.0   1   0.0 0.0 7819332.0, 7819332.0 1.28
BXD15/TyJ m 3338322.0 0.0   1   0.0 0.0 3338322.0, 3338322.0 -0.74
BXD18/TyJ m 3612844.0 0.0   1   0.0 0.0 3612844.0, 3612844.0 -0.62
BXD19/TyJ m 3669780.0 86554.0   2   61203.0 0.0236 3608577.0, 3730983.0 -0.59
BXD1/TyJ m 4510770.0 0.0   1   0.0 0.0 4510770.0, 4510770.0 -0.21
BXD20/TyJ m 5457804.0 0.0   1   0.0 0.0 5457804.0, 5457804.0 0.22
BXD21/TyJ m 2231900.0 0.0   1   0.0 0.0 2231900.0, 2231900.0 -1.24
BXD22/TyJ m 6235340.0 0.0   1   0.0 0.0 6235340.0, 6235340.0 0.57
BXD24/TyJ m 4124238.0 0.0   1   0.0 0.0 4124238.0, 4124238.0 -0.39
BXD24/TyJ-Cep290rd16/J m 3374465.0 0.0   1   0.0 0.0 3374465.0, 3374465.0 -0.72
BXD28/TyJ m 4206745.0 786105.0   2   555860.0 0.187 3650885.0, 4762606.0 -0.35
BXD29-Tlr4lps-2J/J m 5157314.0 0.0   1   0.0 0.0 5157314.0, 5157314.0 0.08
BXD2/TyJ m 6420452.0 0.0   1   0.0 0.0 6420452.0, 6420452.0 0.65
BXD32/TyJ m 6917808.0 0.0   1   0.0 0.0 6917808.0, 6917808.0 0.88
BXD33/TyJ m 6370464.0 0.0   1   0.0 0.0 6370464.0, 6370464.0 0.63
BXD34/TyJ m 4389868.0 0.0   1   0.0 0.0 4389868.0, 4389868.0 -0.27
BXD36/TyJ m 3557793.0 0.0   1   0.0 0.0 3557793.0, 3557793.0 -0.64
BXD38/TyJ m 5589825.0 0.0   1   0.0 0.0 5589825.0, 5589825.0 0.28
BXD39/TyJ m 3435700.0 0.0   1   0.0 0.0 3435700.0, 3435700.0 -0.7
BXD40/TyJ m 5352350.0 0.0   1   0.0 0.0 5352350.0, 5352350.0 0.17
BXD42/TyJ m 2973599.0 0.0   1   0.0 0.0 2973599.0, 2973599.0 -0.91
BXD5/TyJ m 4927893.0 0.0   1   0.0 0.0 4927893.0, 4927893.0 -0.02
BXD6/TyJ m 3595145.0 0.0   1   0.0 0.0 3595145.0, 3595145.0 -0.63
BXD8/TyJ m 3985446.0 0.0   1   0.0 0.0 3985446.0, 3985446.0 -0.45
BXD9/TyJ m 2051604.0 0.0   1   0.0 0.0 2051604.0, 2051604.0 -1.32
BXH10/TyJ m 5610492.0 0.0   1   0.0 0.0 5610492.0, 5610492.0 0.29
BXH19/TyJ m 5297170.0 0.0   1   0.0 0.0 5297170.0, 5297170.0 0.14
BXH20/KccJ m 5969337.0 0.0   1   0.0 0.0 5969337.0, 5969337.0 0.45
BXH22/KccJ m 4848226.0 0.0   1   0.0 0.0 4848226.0, 4848226.0 -0.06
BXH2/TyJ m 5092777.0 0.0   1   0.0 0.0 5092777.0, 5092777.0 0.05
BXH4/TyJ m 4347880.0 1400444.0   2   990263.0 0.322 3357617.0, 5338144.0 -0.29
BXH6/TyJ m 6530041.0 0.0   1   0.0 0.0 6530041.0, 6530041.0 0.7
BXH7/TyJ m 4425423.0 0.0   1   0.0 0.0 4425423.0, 4425423.0 -0.25
BXH8/TyJ m 4679369.0 0.0   1   0.0 0.0 4679369.0, 4679369.0 -0.14
BXH9/TyJ m 4730326.0 0.0   1   0.0 0.0 4730326.0, 4730326.0 -0.11
C3H/HeJ m 4599862.0 616112.0   2   435657.0 0.134 4164205.0, 5035520.0 -0.17
C57BL/6J m 10546640.0 3522338.0   5 1575237.0 0.334 7501841.0, 16590328.0 2.52
C57L/J m 4868203.0 0.0   1   0.0 0.0 4868203.0, 4868203.0 -0.05
C58/J m 14971545.0 0.0   1   0.0 0.0 14971545.0, 14971545.0 4.51
CAST/EiJ m 3260940.0 0.0   1   0.0 0.0 3260940.0, 3260940.0 -0.78
CBA/J m 4199027.0 0.0   1   0.0 0.0 4199027.0, 4199027.0 -0.35
CE/J m 4361408.0 0.0   1   0.0 0.0 4361408.0, 4361408.0 -0.28
CXB11/HiAJ m 4671308.0 2141877.0   2   1514536.0 0.459 3156772.0, 6185844.0 -0.14
CXB12/HiAJ m 5078897.0 528937.0   2   374015.0 0.104 4704882.0, 5452912.0 0.05
CXB13/HiAJ m 6713982.0 2334216.0   3 1347660.0 0.348 4280388.0, 8934162.0 0.78
CXB1/ByJ m 4644304.0 1092113.0   3 630532.0 0.235 3447486.0, 5586850.0 -0.15
CXB2/ByJ m 5235685.0 2477261.0   3 1430247.0 0.473 3650462.0, 8090364.0 0.12
CXB3/ByJ m 5029859.0 637833.0   2   451016.0 0.127 4578843.0, 5480874.0 0.02
CXB4/ByJ m 4822626.0 920007.0   2   650543.0 0.191 4172083.0, 5473170.0 -0.07
CXB6/ByJ m 5008934.0 1235589.0   3 713368.0 0.247 3903234.0, 6342650.0 0.01
CXB7/ByJ m 4187162.0 950515.0   2   672116.0 0.227 3515046.0, 4859278.0 -0.36
CXB8/HiAJ m 4855119.0 626759.0   3 361860.0 0.129 4263308.0, 5511784.0 -0.06
CXB9/HiAJ m 5529225.0 887664.0   3 512493.0 0.161 4628778.0, 6403528.0 0.25
DBA/2J m 3227020.0 422295.0   4 211147.0 0.131 2812090.0, 3767788.0 -0.79
FVB/NJ m 3927320.0 0.0   1   0.0 0.0 3927320.0, 3927320.0 -0.48
I/LnJ m 7075071.0 0.0   1   0.0 0.0 7075071.0, 7075071.0 0.95
KK/HlJ m 4818820.0 0.0   1   0.0 0.0 4818820.0, 4818820.0 -0.07
LG/J m 3318956.0 0.0   1   0.0 0.0 3318956.0, 3318956.0 -0.75
LP/J m 2990176.0 0.0   1   0.0 0.0 2990176.0, 2990176.0 -0.9
MA/MyJ m 5147138.0 0.0   1   0.0 0.0 5147138.0, 5147138.0 0.08
NOD/ShiLtJ m 4976706.0 0.0   1   0.0 0.0 4976706.0, 4976706.0 0.0
NON/ShiLtJ m 5624240.0 0.0   1   0.0 0.0 5624240.0, 5624240.0 0.29
NZW/LacJ m 3239069.0 0.0   1   0.0 0.0 3239069.0, 3239069.0 -0.79
PL/J m 6554630.0 0.0   1   0.0 0.0 6554630.0, 6554630.0 0.71
RIIIS/J m 4365156.0 0.0   1   0.0 0.0 4365156.0, 4365156.0 -0.28
SEA/GnJ m 3764998.0 0.0   1   0.0 0.0 3764998.0, 3764998.0 -0.55
SJL/J m 3463683.0 0.0   1   0.0 0.0 3463683.0, 3463683.0 -0.68
SM/J m 6560688.0 0.0   1   0.0 0.0 6560688.0, 6560688.0 0.71
SWR/J m 4537524.0 0.0   1   0.0 0.0 4537524.0, 4537524.0 -0.2


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 4489280.25 1198623.7928 6925176.8716 2053383.6284
AXB19b/PgnJ m 7698525.0 1198623.7928 10134421.6216 5262628.3784
AXB24/PgnJ m 3181936.5 1198623.7928 5617833.1216 746039.8784
BALB/cJ m 5793925.5 978672.2286 7782826.763 3805024.237
BXA16/PgnJ m 3210031.25 1198623.7928 5645927.8716 774134.6284
BXD19/TyJ m 3669780.3 1198623.7928 6105676.9216 1233883.6784
BXD28/TyJ m 4206745.4 1198623.7928 6642642.0216 1770848.7784
BXH4/TyJ m 4347880.4 1198623.7928 6783777.0216 1911983.7784
C3H/HeJ m 4599862.4 1198623.7928 7035759.0216 2163965.7784
C57BL/6J m 10546640.0 758076.2486 12087236.2938 9006043.7062
CXB11/HiAJ m 4671307.9 1198623.7928 7107204.5216 2235411.2784
CXB12/HiAJ m 5078896.75 1198623.7928 7514793.3716 2643000.1284
CXB13/HiAJ m 6713982.1667 978672.2286 8702883.4297 4725080.9036
CXB1/ByJ m 4644304.3333 978672.2286 6633205.5964 2655403.0703
CXB2/ByJ m 5235685.3333 978672.2286 7224586.5964 3246784.0703
CXB3/ByJ m 5029858.75 1198623.7928 7465755.3716 2593962.1284
CXB4/ByJ m 4822626.15 1198623.7928 7258522.7716 2386729.5284
CXB6/ByJ m 5008933.7667 978672.2286 6997835.0297 3020032.5036
CXB7/ByJ m 4187161.75 1198623.7928 6623058.3716 1751265.1284
CXB8/HiAJ m 4855118.8333 978672.2286 6844020.0964 2866217.5703
CXB9/HiAJ m 5529225.3333 978672.2286 7518126.5964 3540324.0703
DBA/2J m 3227020.325 847555.012 4949459.3444 1504581.3056




  GWAS USING LINEAR MIXED MODELS