Project measure / variable:   HMDPpheno6   glycosyl_Trp

ID, description, units MPD:50153   glycosyl_Trp   liver C-glycosyltryptophan (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver C-glycosyltryptophan (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means158992   None
Median of the strain means156712   None
SD of the strain means± 35131
Coefficient of variation (CV)0.221
Min–max range of strain means80353   –   319600   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 50732445133.879 2415830720.6609 5.2391 < 0.0001
Residuals 34 15678075486.4297 461119867.2479


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 165844.0 0.0   1   0.0 0.0 165844.0, 165844.0 0.2
A/J m 122736.0 28762.0   2   20338.0 0.234 102398.0, 143074.0 -1.03
AKR/J m 104325.0 0.0   1   0.0 0.0 104325.0, 104325.0 -1.56
AXB10/PgnJ m 122115.0 0.0   1   0.0 0.0 122115.0, 122115.0 -1.05
AXB12/PgnJ m 136101.0 0.0   1   0.0 0.0 136101.0, 136101.0 -0.65
AXB13/PgnJ m 148018.0 0.0   1   0.0 0.0 148018.0, 148018.0 -0.31
AXB15/PgnJ m 174090.0 0.0   1   0.0 0.0 174090.0, 174090.0 0.43
AXB19a/PgnJ m 182369.0 0.0   1   0.0 0.0 182369.0, 182369.0 0.67
AXB19b/PgnJ m 282601.0 38194.0   2   27007.0 0.135 255594.0, 309609.0 3.52
AXB19/PgnJ m 211220.0 0.0   1   0.0 0.0 211220.0, 211220.0 1.49
AXB1/PgnJ m 181385.0 0.0   1   0.0 0.0 181385.0, 181385.0 0.64
AXB23/PgnJ m 145071.0 0.0   1   0.0 0.0 145071.0, 145071.0 -0.4
AXB24/PgnJ m 123865.0 18002.0   2   12730.0 0.145 111136.0, 136595.0 -1.0
AXB2/PgnJ m 164882.0 0.0   1   0.0 0.0 164882.0, 164882.0 0.17
AXB4/PgnJ m 145439.0 0.0   1   0.0 0.0 145439.0, 145439.0 -0.39
AXB5/PgnJ m 118061.0 0.0   1   0.0 0.0 118061.0, 118061.0 -1.17
AXB6/PgnJ m 173094.0 0.0   1   0.0 0.0 173094.0, 173094.0 0.4
AXB8/PgnJ m 128704.0 0.0   1   0.0 0.0 128704.0, 128704.0 -0.86
BALB/cJ m 157442.0 22830.0   3 13181.0 0.145 132523.0, 177350.0 -0.04
BTBR T+ Itpr3tf/J m 163671.0 0.0   1   0.0 0.0 163671.0, 163671.0 0.13
BUB/BnJ m 319600.0 0.0   1   0.0 0.0 319600.0, 319600.0 4.57
BXA11/PgnJ m 156713.0 0.0   1   0.0 0.0 156713.0, 156713.0 -0.06
BXA12/PgnJ m 102834.0 0.0   1   0.0 0.0 102834.0, 102834.0 -1.6
BXA13/PgnJ m 133170.0 0.0   1   0.0 0.0 133170.0, 133170.0 -0.74
BXA14/PgnJ m 180054.0 0.0   1   0.0 0.0 180054.0, 180054.0 0.6
BXA16/PgnJ m 148382.0 1113.0   2   787.0 0.0075 147595.0, 149169.0 -0.3
BXA1/PgnJ m 108129.0 0.0   1   0.0 0.0 108129.0, 108129.0 -1.45
BXA24/PgnJ m 176475.0 0.0   1   0.0 0.0 176475.0, 176475.0 0.5
BXA25/PgnJ m 80353.0 0.0   1   0.0 0.0 80353.0, 80353.0 -2.24
BXA26/PgnJ m 157204.0 0.0   1   0.0 0.0 157204.0, 157204.0 -0.05
BXA2/PgnJ m 185119.0 0.0   1   0.0 0.0 185119.0, 185119.0 0.74
BXA4/PgnJ m 133004.0 0.0   1   0.0 0.0 133004.0, 133004.0 -0.74
BXA7/PgnJ m 135642.0 0.0   1   0.0 0.0 135642.0, 135642.0 -0.66
BXA8/PgnJ m 113147.0 0.0   1   0.0 0.0 113147.0, 113147.0 -1.3
BXD11/TyJ m 128257.0 0.0   1   0.0 0.0 128257.0, 128257.0 -0.87
BXD12/TyJ m 188555.0 0.0   1   0.0 0.0 188555.0, 188555.0 0.84
BXD13/TyJ m 122132.0 0.0   1   0.0 0.0 122132.0, 122132.0 -1.05
BXD14/TyJ m 157536.0 0.0   1   0.0 0.0 157536.0, 157536.0 -0.04
BXD15/TyJ m 145454.0 0.0   1   0.0 0.0 145454.0, 145454.0 -0.39
BXD18/TyJ m 181657.0 0.0   1   0.0 0.0 181657.0, 181657.0 0.65
BXD19/TyJ m 153466.0 24172.0   2   17092.0 0.158 136374.0, 170559.0 -0.16
BXD1/TyJ m 167601.0 0.0   1   0.0 0.0 167601.0, 167601.0 0.25
BXD20/TyJ m 200698.0 0.0   1   0.0 0.0 200698.0, 200698.0 1.19
BXD21/TyJ m 138640.0 0.0   1   0.0 0.0 138640.0, 138640.0 -0.58
BXD22/TyJ m 223938.0 0.0   1   0.0 0.0 223938.0, 223938.0 1.85
BXD24/TyJ m 128300.0 0.0   1   0.0 0.0 128300.0, 128300.0 -0.87
BXD24/TyJ-Cep290rd16/J m 157045.0 0.0   1   0.0 0.0 157045.0, 157045.0 -0.06
BXD28/TyJ m 132122.0 8739.0   2   6179.0 0.0661 125943.0, 138302.0 -0.76
BXD29-Tlr4lps-2J/J m 188414.0 0.0   1   0.0 0.0 188414.0, 188414.0 0.84
BXD2/TyJ m 239341.0 0.0   1   0.0 0.0 239341.0, 239341.0 2.29
BXD32/TyJ m 152601.0 0.0   1   0.0 0.0 152601.0, 152601.0 -0.18
BXD33/TyJ m 205776.0 0.0   1   0.0 0.0 205776.0, 205776.0 1.33
BXD34/TyJ m 164868.0 0.0   1   0.0 0.0 164868.0, 164868.0 0.17
BXD36/TyJ m 121532.0 0.0   1   0.0 0.0 121532.0, 121532.0 -1.07
BXD38/TyJ m 193122.0 0.0   1   0.0 0.0 193122.0, 193122.0 0.97
BXD39/TyJ m 153646.0 0.0   1   0.0 0.0 153646.0, 153646.0 -0.15
BXD40/TyJ m 138476.0 0.0   1   0.0 0.0 138476.0, 138476.0 -0.58
BXD42/TyJ m 148182.0 0.0   1   0.0 0.0 148182.0, 148182.0 -0.31
BXD5/TyJ m 162216.0 0.0   1   0.0 0.0 162216.0, 162216.0 0.09
BXD6/TyJ m 182264.0 0.0   1   0.0 0.0 182264.0, 182264.0 0.66
BXD8/TyJ m 139755.0 0.0   1   0.0 0.0 139755.0, 139755.0 -0.55
BXD9/TyJ m 157398.0 0.0   1   0.0 0.0 157398.0, 157398.0 -0.05
BXH10/TyJ m 129133.0 0.0   1   0.0 0.0 129133.0, 129133.0 -0.85
BXH19/TyJ m 111957.0 0.0   1   0.0 0.0 111957.0, 111957.0 -1.34
BXH20/KccJ m 160566.0 0.0   1   0.0 0.0 160566.0, 160566.0 0.04
BXH22/KccJ m 200857.0 0.0   1   0.0 0.0 200857.0, 200857.0 1.19
BXH2/TyJ m 185043.0 0.0   1   0.0 0.0 185043.0, 185043.0 0.74
BXH4/TyJ m 172544.0 2101.0   2   1486.0 0.0122 171059.0, 174030.0 0.39
BXH6/TyJ m 167263.0 0.0   1   0.0 0.0 167263.0, 167263.0 0.24
BXH7/TyJ m 143604.0 0.0   1   0.0 0.0 143604.0, 143604.0 -0.44
BXH8/TyJ m 160419.0 0.0   1   0.0 0.0 160419.0, 160419.0 0.04
BXH9/TyJ m 192787.0 0.0   1   0.0 0.0 192787.0, 192787.0 0.96
C3H/HeJ m 156712.0 9219.0   2   6519.0 0.0588 150193.0, 163231.0 -0.06
C57BL/6J m 175702.0 32486.0   5 14528.0 0.185 135836.0, 225239.0 0.48
C57L/J m 137270.0 0.0   1   0.0 0.0 137270.0, 137270.0 -0.62
C58/J m 249069.0 0.0   1   0.0 0.0 249069.0, 249069.0 2.56
CAST/EiJ m 147911.0 0.0   1   0.0 0.0 147911.0, 147911.0 -0.32
CBA/J m 119099.0 0.0   1   0.0 0.0 119099.0, 119099.0 -1.14
CE/J m 162826.0 0.0   1   0.0 0.0 162826.0, 162826.0 0.11
CXB11/HiAJ m 147155.0 1710.0   2   1209.0 0.0116 145945.0, 148364.0 -0.34
CXB12/HiAJ m 154686.0 4604.0   2   3255.0 0.0298 151430.0, 157941.0 -0.12
CXB13/HiAJ m 191309.0 19916.0   3 11498.0 0.104 171082.0, 210898.0 0.92
CXB1/ByJ m 163198.0 21320.0   3 12309.0 0.131 149942.0, 187791.0 0.12
CXB2/ByJ m 145046.0 25674.0   3 14823.0 0.177 115612.0, 162822.0 -0.4
CXB3/ByJ m 165699.0 11400.0   2   8061.0 0.0688 157638.0, 173760.0 0.19
CXB4/ByJ m 146169.0 9169.0   2   6483.0 0.0627 139686.0, 152652.0 -0.37
CXB6/ByJ m 197521.0 35943.0   3 20752.0 0.182 156570.0, 223839.0 1.1
CXB7/ByJ m 170070.0 14138.0   2   9997.0 0.0831 160072.0, 180067.0 0.32
CXB8/HiAJ m 197865.0 9753.0   3 5631.0 0.0493 189302.0, 208481.0 1.11
CXB9/HiAJ m 150331.0 20039.0   3 11569.0 0.133 130595.0, 170659.0 -0.25
DBA/2J m 157822.0 2390.0   4 1195.0 0.0151 155122.0, 160943.0 -0.03
FVB/NJ m 151383.0 0.0   1   0.0 0.0 151383.0, 151383.0 -0.22
I/LnJ m 172690.0 0.0   1   0.0 0.0 172690.0, 172690.0 0.39
KK/HlJ m 127913.0 0.0   1   0.0 0.0 127913.0, 127913.0 -0.88
LG/J m 143911.0 0.0   1   0.0 0.0 143911.0, 143911.0 -0.43
LP/J m 156272.0 0.0   1   0.0 0.0 156272.0, 156272.0 -0.08
MA/MyJ m 141318.0 0.0   1   0.0 0.0 141318.0, 141318.0 -0.5
NOD/ShiLtJ m 153880.0 0.0   1   0.0 0.0 153880.0, 153880.0 -0.15
NON/ShiLtJ m 137920.0 0.0   1   0.0 0.0 137920.0, 137920.0 -0.6
NZW/LacJ m 164300.0 0.0   1   0.0 0.0 164300.0, 164300.0 0.15
PL/J m 148263.0 0.0   1   0.0 0.0 148263.0, 148263.0 -0.31
RIIIS/J m 87132.0 0.0   1   0.0 0.0 87132.0, 87132.0 -2.05
SEA/GnJ m 156851.0 0.0   1   0.0 0.0 156851.0, 156851.0 -0.06
SJL/J m 163304.0 0.0   1   0.0 0.0 163304.0, 163304.0 0.12
SM/J m 179122.0 0.0   1   0.0 0.0 179122.0, 179122.0 0.57
SWR/J m 155404.0 0.0   1   0.0 0.0 155404.0, 155404.0 -0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 122735.9 15184.2001 153593.9073 91877.8927
AXB19b/PgnJ m 282601.45 15184.2001 313459.4573 251743.4427
AXB24/PgnJ m 123865.35 15184.2001 154723.3573 93007.3427
BALB/cJ m 157442.4 12397.8475 182637.8575 132246.9425
BXA16/PgnJ m 148382.25 15184.2001 179240.2573 117524.2427
BXD19/TyJ m 153466.3 15184.2001 184324.3073 122608.2927
BXD28/TyJ m 132122.4 15184.2001 162980.4073 101264.3927
BXH4/TyJ m 172544.35 15184.2001 203402.3573 141686.3427
C3H/HeJ m 156711.8 15184.2001 187569.8073 125853.7927
C57BL/6J m 175701.78 9603.3314 195218.0975 156185.4625
CXB11/HiAJ m 147154.85 15184.2001 178012.8573 116296.8427
CXB12/HiAJ m 154685.55 15184.2001 185543.5573 123827.5427
CXB13/HiAJ m 191309.0667 12397.8475 216504.5242 166113.6092
CXB1/ByJ m 163197.6 12397.8475 188393.0575 138002.1425
CXB2/ByJ m 145046.0667 12397.8475 170241.5242 119850.6092
CXB3/ByJ m 165698.75 15184.2001 196556.7573 134840.7427
CXB4/ByJ m 146169.0 15184.2001 177027.0073 115310.9927
CXB6/ByJ m 197520.6667 12397.8475 222716.1242 172325.2092
CXB7/ByJ m 170069.6 15184.2001 200927.6073 139211.5927
CXB8/HiAJ m 197864.5333 12397.8475 223059.9908 172669.0758
CXB9/HiAJ m 150331.0 12397.8475 175526.4575 125135.5425
DBA/2J m 157822.3 10736.8509 179642.2062 136002.3938




  GWAS USING LINEAR MIXED MODELS