Project measure / variable:   HMDPpheno6   anthranilate

ID, description, units MPD:50152   anthranilate   liver anthranilate (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver anthranilate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means76637   None
Median of the strain means68703   None
SD of the strain means± 41572
Coefficient of variation (CV)0.542
Min–max range of strain means20841   –   302345   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 19 46258847572.1998 2434676188.0105 1.3752 0.2078
Residuals 32 56651657002.0254 1770364281.3133


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 55003.0 0.0   1   0.0 0.0 55003.0, 55003.0 -0.52
A/J m 57099.0 10935.0   2   7732.0 0.192 49367.0, 64831.0 -0.47
AKR/J m 63273.0 0.0   1   0.0 0.0 63273.0, 63273.0 -0.32
AXB10/PgnJ m 97935.0 0.0   1   0.0 0.0 97935.0, 97935.0 0.51
AXB12/PgnJ m 59604.0 0.0   1   0.0 0.0 59604.0, 59604.0 -0.41
AXB13/PgnJ m 39106.0 0.0   1   0.0 0.0 39106.0, 39106.0 -0.9
AXB15/PgnJ m 71412.0 0.0   1   0.0 0.0 71412.0, 71412.0 -0.13
AXB19a/PgnJ m 121889.0 0.0   1   0.0 0.0 121889.0, 121889.0 1.09
AXB19b/PgnJ m 143939.0 95604.0   2   67602.0 0.664 76336.0, 211541.0 1.62
AXB19/PgnJ m 125144.0 0.0   1   0.0 0.0 125144.0, 125144.0 1.17
AXB1/PgnJ m 238404.0 0.0   1   0.0 0.0 238404.0, 238404.0 3.89
AXB23/PgnJ m 41928.0 0.0   1   0.0 0.0 41928.0, 41928.0 -0.83
AXB24/PgnJ m 50020.0 18173.0   2   12850.0 0.363 37170.0, 62871.0 -0.64
AXB2/PgnJ m 114223.0 0.0   1   0.0 0.0 114223.0, 114223.0 0.9
AXB4/PgnJ m 161923.0 0.0   1   0.0 0.0 161923.0, 161923.0 2.05
AXB5/PgnJ m 30010.0 0.0   1   0.0 0.0 30010.0, 30010.0 -1.12
AXB6/PgnJ m 54598.0 0.0   1   0.0 0.0 54598.0, 54598.0 -0.53
AXB8/PgnJ m 100398.0 0.0   1   0.0 0.0 100398.0, 100398.0 0.57
BALB/cJ m 83707.0 21813.0   3 12594.0 0.261 59193.0, 100974.0 0.17
BTBR T+ Itpr3tf/J m 56173.0 0.0   1   0.0 0.0 56173.0, 56173.0 -0.49
BUB/BnJ m 95780.0 0.0   1   0.0 0.0 95780.0, 95780.0 0.46
BXA11/PgnJ m 37193.0 0.0   1   0.0 0.0 37193.0, 37193.0 -0.95
BXA12/PgnJ m 79996.0 0.0   1   0.0 0.0 79996.0, 79996.0 0.08
BXA13/PgnJ m 52516.0 0.0   1   0.0 0.0 52516.0, 52516.0 -0.58
BXA14/PgnJ m 95004.0 0.0   1   0.0 0.0 95004.0, 95004.0 0.44
BXA16/PgnJ m 87601.0 15806.0   2   11176.0 0.18 76424.0, 98777.0 0.26
BXA1/PgnJ m 66055.0 0.0   1   0.0 0.0 66055.0, 66055.0 -0.25
BXA24/PgnJ m 100742.0 0.0   1   0.0 0.0 100742.0, 100742.0 0.58
BXA25/PgnJ m 77811.0 0.0   1   0.0 0.0 77811.0, 77811.0 0.03
BXA26/PgnJ m 88600.0 0.0   1   0.0 0.0 88600.0, 88600.0 0.29
BXA2/PgnJ m 65311.0 0.0   1   0.0 0.0 65311.0, 65311.0 -0.27
BXA4/PgnJ m 71217.0 0.0   1   0.0 0.0 71217.0, 71217.0 -0.13
BXA7/PgnJ m 48368.0 0.0   1   0.0 0.0 48368.0, 48368.0 -0.68
BXA8/PgnJ m 104897.0 0.0   1   0.0 0.0 104897.0, 104897.0 0.68
BXD11/TyJ m 79293.0 0.0   1   0.0 0.0 79293.0, 79293.0 0.06
BXD12/TyJ m 77063.0 0.0   1   0.0 0.0 77063.0, 77063.0 0.01
BXD13/TyJ m 54634.0 0.0   1   0.0 0.0 54634.0, 54634.0 -0.53
BXD14/TyJ m 53014.0 0.0   1   0.0 0.0 53014.0, 53014.0 -0.57
BXD15/TyJ m 71114.0 0.0   1   0.0 0.0 71114.0, 71114.0 -0.13
BXD18/TyJ m 31161.0 0.0   1   0.0 0.0 31161.0, 31161.0 -1.09
BXD19/TyJ m 46841.0 4873.0   2   3445.0 0.104 43396.0, 50287.0 -0.72
BXD1/TyJ m 47125.0 0.0   1   0.0 0.0 47125.0, 47125.0 -0.71
BXD20/TyJ m 85508.0 0.0   1   0.0 0.0 85508.0, 85508.0 0.21
BXD21/TyJ m 41909.0 0.0   1   0.0 0.0 41909.0, 41909.0 -0.84
BXD22/TyJ m 43416.0 0.0   1   0.0 0.0 43416.0, 43416.0 -0.8
BXD24/TyJ m 52019.0 0.0   1   0.0 0.0 52019.0, 52019.0 -0.59
BXD24/TyJ-Cep290rd16/J m 44243.0 0.0   1   0.0 0.0 44243.0, 44243.0 -0.78
BXD28/TyJ m 54471.0 0.0   1   0.0 0.0 54471.0, 54471.0 -0.53
BXD29-Tlr4lps-2J/J m 84373.0 0.0   1   0.0 0.0 84373.0, 84373.0 0.19
BXD2/TyJ m 72982.0 0.0   1   0.0 0.0 72982.0, 72982.0 -0.09
BXD32/TyJ m 95001.0 0.0   1   0.0 0.0 95001.0, 95001.0 0.44
BXD33/TyJ m 189141.0 0.0   1   0.0 0.0 189141.0, 189141.0 2.71
BXD34/TyJ m 76638.0 0.0   1   0.0 0.0 76638.0, 76638.0 0.0
BXD36/TyJ m 42163.0 0.0   1   0.0 0.0 42163.0, 42163.0 -0.83
BXD38/TyJ m 145242.0 0.0   1   0.0 0.0 145242.0, 145242.0 1.65
BXD39/TyJ m 39265.0 0.0   1   0.0 0.0 39265.0, 39265.0 -0.9
BXD40/TyJ m 67884.0 0.0   1   0.0 0.0 67884.0, 67884.0 -0.21
BXD42/TyJ m 20841.0 0.0   1   0.0 0.0 20841.0, 20841.0 -1.34
BXD5/TyJ m 111246.0 0.0   1   0.0 0.0 111246.0, 111246.0 0.83
BXD6/TyJ m 48915.0 0.0   1   0.0 0.0 48915.0, 48915.0 -0.67
BXD8/TyJ m 37568.0 0.0   1   0.0 0.0 37568.0, 37568.0 -0.94
BXD9/TyJ m 60019.0 0.0   1   0.0 0.0 60019.0, 60019.0 -0.4
BXH10/TyJ m 130633.0 0.0   1   0.0 0.0 130633.0, 130633.0 1.3
BXH19/TyJ m 72584.0 0.0   1   0.0 0.0 72584.0, 72584.0 -0.1
BXH20/KccJ m 58841.0 0.0   1   0.0 0.0 58841.0, 58841.0 -0.43
BXH22/KccJ m 51778.0 0.0   1   0.0 0.0 51778.0, 51778.0 -0.6
BXH2/TyJ m 39565.0 0.0   1   0.0 0.0 39565.0, 39565.0 -0.89
BXH4/TyJ m 74022.0 1098.0   2   776.0 0.0148 73246.0, 74799.0 -0.06
BXH6/TyJ m 94198.0 0.0   1   0.0 0.0 94198.0, 94198.0 0.42
BXH7/TyJ m 68751.0 0.0   1   0.0 0.0 68751.0, 68751.0 -0.19
BXH8/TyJ m 92188.0 0.0   1   0.0 0.0 92188.0, 92188.0 0.37
C3H/HeJ m 60742.0 17279.0   2   12218.0 0.284 48524.0, 72960.0 -0.38
C57BL/6J m 121532.0 37246.0   5 16657.0 0.306 86378.0, 184700.0 1.08
C57L/J m 55521.0 0.0   1   0.0 0.0 55521.0, 55521.0 -0.51
C58/J m 302345.0 0.0   1   0.0 0.0 302345.0, 302345.0 5.43
CAST/EiJ m 50288.0 0.0   1   0.0 0.0 50288.0, 50288.0 -0.63
CBA/J m 70458.0 0.0   1   0.0 0.0 70458.0, 70458.0 -0.15
CE/J m 80259.0 0.0   1   0.0 0.0 80259.0, 80259.0 0.09
CXB11/HiAJ m 71567.0 22841.0   2   16151.0 0.319 55416.0, 87718.0 -0.12
CXB12/HiAJ m 31677.0 12341.0   2   8726.0 0.39 22950.0, 40403.0 -1.08
CXB13/HiAJ m 126607.0 117745.0   3 67980.0 0.93 53056.0, 262410.0 1.2
CXB1/ByJ m 74960.0 28531.0   3 16472.0 0.381 57035.0, 107861.0 -0.04
CXB2/ByJ m 70613.0 46374.0   3 26774.0 0.657 40115.0, 123980.0 -0.14
CXB3/ByJ m 59190.0 19400.0   2   13718.0 0.328 45472.0, 72908.0 -0.42
CXB4/ByJ m 25736.0 0.0   1   0.0 0.0 25736.0, 25736.0 -1.22
CXB6/ByJ m 80010.0 19160.0   3 11062.0 0.239 60614.0, 98926.0 0.08
CXB7/ByJ m 64832.0 15818.0   2   11185.0 0.244 53647.0, 76017.0 -0.28
CXB8/HiAJ m 99751.0 34656.0   3 20009.0 0.347 67218.0, 136198.0 0.56
CXB9/HiAJ m 44524.0 11960.0   3 6905.0 0.269 34464.0, 57748.0 -0.77
DBA/2J m 41469.0 23151.0   4 11576.0 0.558 21407.0, 69713.0 -0.85
FVB/NJ m 92747.0 0.0   1   0.0 0.0 92747.0, 92747.0 0.39
I/LnJ m 85140.0 0.0   1   0.0 0.0 85140.0, 85140.0 0.2
KK/HlJ m 61736.0 0.0   1   0.0 0.0 61736.0, 61736.0 -0.36
LG/J m 68550.0 0.0   1   0.0 0.0 68550.0, 68550.0 -0.19
LP/J m 113223.0 0.0   1   0.0 0.0 113223.0, 113223.0 0.88
MA/MyJ m 51905.0 0.0   1   0.0 0.0 51905.0, 51905.0 -0.59
NOD/ShiLtJ m 45471.0 0.0   1   0.0 0.0 45471.0, 45471.0 -0.75
NON/ShiLtJ m 68703.0 0.0   1   0.0 0.0 68703.0, 68703.0 -0.19
NZW/LacJ m 62257.0 0.0   1   0.0 0.0 62257.0, 62257.0 -0.35
PL/J m 88612.0 0.0   1   0.0 0.0 88612.0, 88612.0 0.29
RIIIS/J m 36902.0 0.0   1   0.0 0.0 36902.0, 36902.0 -0.96
SEA/GnJ m 43798.0 0.0   1   0.0 0.0 43798.0, 43798.0 -0.79
SJL/J m 144475.0 0.0   1   0.0 0.0 144475.0, 144475.0 1.63
SM/J m 41431.0 0.0   1   0.0 0.0 41431.0, 41431.0 -0.85
SWR/J m 117366.0 0.0   1   0.0 0.0 117366.0, 117366.0 0.98


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 57098.85 29752.0107 117701.7126 0.0
AXB19b/PgnJ m 143938.55 29752.0107 204541.4126 83335.6874
AXB24/PgnJ m 50020.25 29752.0107 110623.1126 0.0
BALB/cJ m 83707.3667 24292.415 133189.3968 34225.3365
BXA16/PgnJ m 87600.6 29752.0107 148203.4626 26997.7374
BXD19/TyJ m 46841.45 29752.0107 107444.3126 0.0
BXH4/TyJ m 74022.45 29752.0107 134625.3126 13419.5874
C3H/HeJ m 60742.3 29752.0107 121345.1626 139.4374
C57BL/6J m 121532.14 18816.8238 159860.7557 83203.5243
CXB11/HiAJ m 71567.35 29752.0107 132170.2126 10964.4874
CXB12/HiAJ m 31676.7 29752.0107 92279.5626 0.0
CXB13/HiAJ m 126607.4667 24292.415 176089.4968 77125.4365
CXB1/ByJ m 74960.4667 24292.415 124442.4968 25478.4365
CXB2/ByJ m 70613.0333 24292.415 120095.0635 21131.0032
CXB3/ByJ m 59190.35 29752.0107 119793.2126 0.0
CXB6/ByJ m 80009.7333 24292.415 129491.7635 30527.7032
CXB7/ByJ m 64832.15 29752.0107 125435.0126 4229.2874
CXB8/HiAJ m 99750.7 24292.415 149232.7301 50268.6699
CXB9/HiAJ m 44524.5 24292.415 94006.5301 0.0
DBA/2J m 41469.1 21037.8485 84321.7951 0.0




  GWAS USING LINEAR MIXED MODELS