Project measure / variable:   HMDPpheno6   phenol_sulfate

ID, description, units MPD:50149   phenol_sulfate   liver phenol sulfate (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   103 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver phenol sulfate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested103 strains
Mean of the strain means31790   None
Median of the strain means27514   None
SD of the strain means± 21833
Coefficient of variation (CV)0.687
Min–max range of strain means9149   –   169890   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 19240187057.3254 962009352.8663 1.0803 0.4112
Residuals 33 29386886067.4096 890511699.0124


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 12757.0 0.0   1   0.0 0.0 12757.0, 12757.0 -0.87
A/J m 31253.0 6970.0   2   4928.0 0.223 26325.0, 36182.0 -0.02
AKR/J m 46694.0 0.0   1   0.0 0.0 46694.0, 46694.0 0.68
AXB10/PgnJ m 25831.0 0.0   1   0.0 0.0 25831.0, 25831.0 -0.27
AXB12/PgnJ m 48580.0 0.0   1   0.0 0.0 48580.0, 48580.0 0.77
AXB13/PgnJ m 14345.0 0.0   1   0.0 0.0 14345.0, 14345.0 -0.8
AXB19a/PgnJ m 50258.0 0.0   1   0.0 0.0 50258.0, 50258.0 0.85
AXB19b/PgnJ m 100846.0 109599.0   2   77498.0 1.09 23348.0, 178344.0 3.16
AXB19/PgnJ m 39843.0 0.0   1   0.0 0.0 39843.0, 39843.0 0.37
AXB1/PgnJ m 51763.0 0.0   1   0.0 0.0 51763.0, 51763.0 0.91
AXB23/PgnJ m 27992.0 0.0   1   0.0 0.0 27992.0, 27992.0 -0.17
AXB24/PgnJ m 39325.0 9305.0   2   6580.0 0.237 32746.0, 45905.0 0.35
AXB2/PgnJ m 23359.0 0.0   1   0.0 0.0 23359.0, 23359.0 -0.39
AXB4/PgnJ m 28980.0 0.0   1   0.0 0.0 28980.0, 28980.0 -0.13
AXB5/PgnJ m 35035.0 0.0   1   0.0 0.0 35035.0, 35035.0 0.15
AXB8/PgnJ m 19048.0 0.0   1   0.0 0.0 19048.0, 19048.0 -0.58
BALB/cJ m 37794.0 39349.0   3 22718.0 1.04 12468.0, 83126.0 0.28
BTBR T+ Itpr3tf/J m 40706.0 0.0   1   0.0 0.0 40706.0, 40706.0 0.41
BUB/BnJ m 26517.0 0.0   1   0.0 0.0 26517.0, 26517.0 -0.24
BXA11/PgnJ m 15516.0 0.0   1   0.0 0.0 15516.0, 15516.0 -0.75
BXA12/PgnJ m 35091.0 0.0   1   0.0 0.0 35091.0, 35091.0 0.15
BXA13/PgnJ m 24071.0 0.0   1   0.0 0.0 24071.0, 24071.0 -0.35
BXA16/PgnJ m 28006.0 3454.0   2   2442.0 0.123 25563.0, 30448.0 -0.17
BXA1/PgnJ m 38770.0 0.0   1   0.0 0.0 38770.0, 38770.0 0.32
BXA24/PgnJ m 22783.0 0.0   1   0.0 0.0 22783.0, 22783.0 -0.41
BXA25/PgnJ m 19706.0 0.0   1   0.0 0.0 19706.0, 19706.0 -0.55
BXA26/PgnJ m 36249.0 0.0   1   0.0 0.0 36249.0, 36249.0 0.2
BXA2/PgnJ m 24093.0 0.0   1   0.0 0.0 24093.0, 24093.0 -0.35
BXA4/PgnJ m 29546.0 0.0   1   0.0 0.0 29546.0, 29546.0 -0.1
BXA7/PgnJ m 64692.0 0.0   1   0.0 0.0 64692.0, 64692.0 1.51
BXA8/PgnJ m 71250.0 0.0   1   0.0 0.0 71250.0, 71250.0 1.81
BXD11/TyJ m 16774.0 0.0   1   0.0 0.0 16774.0, 16774.0 -0.69
BXD12/TyJ m 10195.0 0.0   1   0.0 0.0 10195.0, 10195.0 -0.99
BXD13/TyJ m 27514.0 0.0   1   0.0 0.0 27514.0, 27514.0 -0.2
BXD14/TyJ m 17725.0 0.0   1   0.0 0.0 17725.0, 17725.0 -0.64
BXD15/TyJ m 11148.0 0.0   1   0.0 0.0 11148.0, 11148.0 -0.95
BXD18/TyJ m 17178.0 0.0   1   0.0 0.0 17178.0, 17178.0 -0.67
BXD19/TyJ m 20514.0 5239.0   2   3704.0 0.255 16810.0, 24218.0 -0.52
BXD1/TyJ m 19023.0 0.0   1   0.0 0.0 19023.0, 19023.0 -0.58
BXD20/TyJ m 27636.0 0.0   1   0.0 0.0 27636.0, 27636.0 -0.19
BXD21/TyJ m 29890.0 0.0   1   0.0 0.0 29890.0, 29890.0 -0.09
BXD22/TyJ m 22449.0 0.0   1   0.0 0.0 22449.0, 22449.0 -0.43
BXD24/TyJ m 19582.0 0.0   1   0.0 0.0 19582.0, 19582.0 -0.56
BXD24/TyJ-Cep290rd16/J m 30431.0 0.0   1   0.0 0.0 30431.0, 30431.0 -0.06
BXD28/TyJ m 25231.0 6549.0   2   4631.0 0.26 20600.0, 29862.0 -0.3
BXD29-Tlr4lps-2J/J m 33416.0 0.0   1   0.0 0.0 33416.0, 33416.0 0.07
BXD2/TyJ m 57281.0 0.0   1   0.0 0.0 57281.0, 57281.0 1.17
BXD32/TyJ m 30716.0 0.0   1   0.0 0.0 30716.0, 30716.0 -0.05
BXD33/TyJ m 20553.0 0.0   1   0.0 0.0 20553.0, 20553.0 -0.51
BXD34/TyJ m 10075.0 0.0   1   0.0 0.0 10075.0, 10075.0 -0.99
BXD36/TyJ m 26977.0 0.0   1   0.0 0.0 26977.0, 26977.0 -0.22
BXD38/TyJ m 15744.0 0.0   1   0.0 0.0 15744.0, 15744.0 -0.73
BXD39/TyJ m 33073.0 0.0   1   0.0 0.0 33073.0, 33073.0 0.06
BXD40/TyJ m 21055.0 0.0   1   0.0 0.0 21055.0, 21055.0 -0.49
BXD42/TyJ m 15402.0 0.0   1   0.0 0.0 15402.0, 15402.0 -0.75
BXD5/TyJ m 38454.0 0.0   1   0.0 0.0 38454.0, 38454.0 0.31
BXD6/TyJ m 45985.0 0.0   1   0.0 0.0 45985.0, 45985.0 0.65
BXD8/TyJ m 15586.0 0.0   1   0.0 0.0 15586.0, 15586.0 -0.74
BXD9/TyJ m 16830.0 0.0   1   0.0 0.0 16830.0, 16830.0 -0.69
BXH10/TyJ m 36876.0 0.0   1   0.0 0.0 36876.0, 36876.0 0.23
BXH19/TyJ m 22189.0 0.0   1   0.0 0.0 22189.0, 22189.0 -0.44
BXH20/KccJ m 19171.0 0.0   1   0.0 0.0 19171.0, 19171.0 -0.58
BXH22/KccJ m 15560.0 0.0   1   0.0 0.0 15560.0, 15560.0 -0.74
BXH2/TyJ m 50955.0 0.0   1   0.0 0.0 50955.0, 50955.0 0.88
BXH4/TyJ m 28110.0 6581.0   2   4654.0 0.234 23457.0, 32764.0 -0.17
BXH6/TyJ m 169890.0 0.0   1   0.0 0.0 169890.0, 169890.0 6.33
BXH7/TyJ m 24473.0 0.0   1   0.0 0.0 24473.0, 24473.0 -0.34
BXH8/TyJ m 79960.0 0.0   1   0.0 0.0 79960.0, 79960.0 2.21
BXH9/TyJ m 20797.0 0.0   1   0.0 0.0 20797.0, 20797.0 -0.5
C3H/HeJ m 66762.0 0.0   1   0.0 0.0 66762.0, 66762.0 1.6
C57BL/6J m 29183.0 7892.0   5 3530.0 0.27 20196.0, 41836.0 -0.12
C57L/J m 10650.0 0.0   1   0.0 0.0 10650.0, 10650.0 -0.97
C58/J m 30362.0 0.0   1   0.0 0.0 30362.0, 30362.0 -0.07
CAST/EiJ m 41636.0 0.0   1   0.0 0.0 41636.0, 41636.0 0.45
CBA/J m 35831.0 0.0   1   0.0 0.0 35831.0, 35831.0 0.19
CE/J m 14722.0 0.0   1   0.0 0.0 14722.0, 14722.0 -0.78
CXB11/HiAJ m 85962.0 107875.0   2   76279.0 1.25 9683.0, 162242.0 2.48
CXB12/HiAJ m 45550.0 6440.0   2   4553.0 0.141 40997.0, 50104.0 0.63
CXB13/HiAJ m 28844.0 3950.0   3 2281.0 0.137 25789.0, 33305.0 -0.13
CXB1/ByJ m 19418.0 8821.0   3 5093.0 0.454 13612.0, 29569.0 -0.57
CXB2/ByJ m 12827.0 2960.0   3 1709.0 0.231 9552.0, 15313.0 -0.87
CXB3/ByJ m 22186.0 6776.0   2   4791.0 0.305 17395.0, 26977.0 -0.44
CXB4/ByJ m 26664.0 10586.0   2   7485.0 0.397 19178.0, 34149.0 -0.23
CXB6/ByJ m 31914.0 15485.0   3 8940.0 0.485 18685.0, 48947.0 0.01
CXB7/ByJ m 22166.0 18467.0   2   13058.0 0.833 9108.0, 35224.0 -0.44
CXB8/HiAJ m 28123.0 3232.0   3 1866.0 0.115 24424.0, 30399.0 -0.17
CXB9/HiAJ m 46688.0 15192.0   3 8771.0 0.325 32587.0, 62776.0 0.68
DBA/2J m 23616.0 11895.0   4 5948.0 0.504 13587.0, 38369.0 -0.37
FVB/NJ m 9149.0 0.0   1   0.0 0.0 9149.0, 9149.0 -1.04
I/LnJ m 40388.0 0.0   1   0.0 0.0 40388.0, 40388.0 0.39
KK/HlJ m 44077.0 0.0   1   0.0 0.0 44077.0, 44077.0 0.56
LG/J m 71466.0 0.0   1   0.0 0.0 71466.0, 71466.0 1.82
LP/J m 10979.0 0.0   1   0.0 0.0 10979.0, 10979.0 -0.95
MA/MyJ m 13168.0 0.0   1   0.0 0.0 13168.0, 13168.0 -0.85
NOD/ShiLtJ m 16778.0 0.0   1   0.0 0.0 16778.0, 16778.0 -0.69
NON/ShiLtJ m 31873.0 0.0   1   0.0 0.0 31873.0, 31873.0 0.0
NZW/LacJ m 21983.0 0.0   1   0.0 0.0 21983.0, 21983.0 -0.45
PL/J m 14504.0 0.0   1   0.0 0.0 14504.0, 14504.0 -0.79
RIIIS/J m 22500.0 0.0   1   0.0 0.0 22500.0, 22500.0 -0.43
SEA/GnJ m 11618.0 0.0   1   0.0 0.0 11618.0, 11618.0 -0.92
SJL/J m 38602.0 0.0   1   0.0 0.0 38602.0, 38602.0 0.31
SM/J m 15923.0 0.0   1   0.0 0.0 15923.0, 15923.0 -0.73
SWR/J m 33136.0 0.0   1   0.0 0.0 33136.0, 33136.0 0.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 31253.3 21101.0865 74183.7832 0.0
AXB19b/PgnJ m 100846.0 21101.0865 143776.4832 57915.5168
AXB24/PgnJ m 39325.25 21101.0865 82255.7332 0.0
BALB/cJ m 37794.4667 17228.9649 72847.0594 2741.8739
BXA16/PgnJ m 28005.7 21101.0865 70936.1832 0.0
BXD19/TyJ m 20514.0 21101.0865 63444.4832 0.0
BXD28/TyJ m 25231.0 21101.0865 68161.4832 0.0
BXH4/TyJ m 28110.45 21101.0865 71040.9332 0.0
C57BL/6J m 29182.86 13345.4989 56334.4816 2031.2384
CXB11/HiAJ m 85962.15 21101.0865 128892.6332 43031.6668
CXB12/HiAJ m 45550.35 21101.0865 88480.8332 2619.8668
CXB13/HiAJ m 28844.1 17228.9649 63896.6927 0.0
CXB1/ByJ m 19418.4333 17228.9649 54471.0261 0.0
CXB2/ByJ m 12827.0667 17228.9649 47879.6594 0.0
CXB3/ByJ m 22186.25 21101.0865 65116.7332 0.0
CXB4/ByJ m 26663.55 21101.0865 69594.0332 0.0
CXB6/ByJ m 31914.1 17228.9649 66966.6927 0.0
CXB7/ByJ m 22166.0 21101.0865 65096.4832 0.0
CXB8/HiAJ m 28123.4 17228.9649 63175.9927 0.0
CXB9/HiAJ m 46688.4 17228.9649 81740.9927 11635.8073
DBA/2J m 23615.775 14920.7213 53972.2108 0.0




  GWAS USING LINEAR MIXED MODELS