Project measure / variable:   HMDPpheno6   PA_Gly

ID, description, units MPD:50148   PA_Gly   liver phenylacetylglycine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver phenylacetylglycine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means21832   None
Median of the strain means19423   None
SD of the strain means± 11995
Coefficient of variation (CV)0.549
Min–max range of strain means6760   –   104622   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 3314730360.476 157844302.8798 1.5357 0.1296
Residuals 34 3494729948.6783 102786174.9611


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 12364.0 0.0   1   0.0 0.0 12364.0, 12364.0 -0.79
A/J m 28875.0 3673.0   2   2597.0 0.127 26278.0, 31472.0 0.59
AKR/J m 15208.0 0.0   1   0.0 0.0 15208.0, 15208.0 -0.55
AXB10/PgnJ m 19441.0 0.0   1   0.0 0.0 19441.0, 19441.0 -0.2
AXB12/PgnJ m 18239.0 0.0   1   0.0 0.0 18239.0, 18239.0 -0.3
AXB13/PgnJ m 21316.0 0.0   1   0.0 0.0 21316.0, 21316.0 -0.04
AXB15/PgnJ m 19806.0 0.0   1   0.0 0.0 19806.0, 19806.0 -0.17
AXB19a/PgnJ m 24634.0 0.0   1   0.0 0.0 24634.0, 24634.0 0.23
AXB19b/PgnJ m 30954.0 21259.0   2   15032.0 0.687 15922.0, 45987.0 0.76
AXB19/PgnJ m 24482.0 0.0   1   0.0 0.0 24482.0, 24482.0 0.22
AXB1/PgnJ m 15758.0 0.0   1   0.0 0.0 15758.0, 15758.0 -0.51
AXB23/PgnJ m 20026.0 0.0   1   0.0 0.0 20026.0, 20026.0 -0.15
AXB24/PgnJ m 27329.0 4622.0   2   3268.0 0.169 24060.0, 30597.0 0.46
AXB4/PgnJ m 13238.0 0.0   1   0.0 0.0 13238.0, 13238.0 -0.72
AXB5/PgnJ m 13328.0 0.0   1   0.0 0.0 13328.0, 13328.0 -0.71
AXB6/PgnJ m 26231.0 0.0   1   0.0 0.0 26231.0, 26231.0 0.37
AXB8/PgnJ m 25204.0 0.0   1   0.0 0.0 25204.0, 25204.0 0.28
BALB/cJ m 25526.0 8395.0   3 4847.0 0.329 19717.0, 35151.0 0.31
BTBR T+ Itpr3tf/J m 18733.0 0.0   1   0.0 0.0 18733.0, 18733.0 -0.26
BUB/BnJ m 14646.0 0.0   1   0.0 0.0 14646.0, 14646.0 -0.6
BXA11/PgnJ m 20305.0 0.0   1   0.0 0.0 20305.0, 20305.0 -0.13
BXA12/PgnJ m 14770.0 0.0   1   0.0 0.0 14770.0, 14770.0 -0.59
BXA13/PgnJ m 19538.0 0.0   1   0.0 0.0 19538.0, 19538.0 -0.19
BXA14/PgnJ m 8979.0 0.0   1   0.0 0.0 8979.0, 8979.0 -1.07
BXA16/PgnJ m 22672.0 2039.0   2   1442.0 0.09 21230.0, 24114.0 0.07
BXA1/PgnJ m 19423.0 0.0   1   0.0 0.0 19423.0, 19423.0 -0.2
BXA24/PgnJ m 17505.0 0.0   1   0.0 0.0 17505.0, 17505.0 -0.36
BXA25/PgnJ m 12775.0 0.0   1   0.0 0.0 12775.0, 12775.0 -0.76
BXA26/PgnJ m 69207.0 0.0   1   0.0 0.0 69207.0, 69207.0 3.95
BXA2/PgnJ m 19432.0 0.0   1   0.0 0.0 19432.0, 19432.0 -0.2
BXA4/PgnJ m 25906.0 0.0   1   0.0 0.0 25906.0, 25906.0 0.34
BXA7/PgnJ m 16403.0 0.0   1   0.0 0.0 16403.0, 16403.0 -0.45
BXA8/PgnJ m 33155.0 0.0   1   0.0 0.0 33155.0, 33155.0 0.94
BXD11/TyJ m 20353.0 0.0   1   0.0 0.0 20353.0, 20353.0 -0.12
BXD12/TyJ m 6760.0 0.0   1   0.0 0.0 6760.0, 6760.0 -1.26
BXD13/TyJ m 17950.0 0.0   1   0.0 0.0 17950.0, 17950.0 -0.32
BXD14/TyJ m 23270.0 0.0   1   0.0 0.0 23270.0, 23270.0 0.12
BXD15/TyJ m 18084.0 0.0   1   0.0 0.0 18084.0, 18084.0 -0.31
BXD18/TyJ m 15818.0 0.0   1   0.0 0.0 15818.0, 15818.0 -0.5
BXD19/TyJ m 18273.0 8420.0   2   5954.0 0.461 12319.0, 24226.0 -0.3
BXD1/TyJ m 29169.0 0.0   1   0.0 0.0 29169.0, 29169.0 0.61
BXD20/TyJ m 13347.0 0.0   1   0.0 0.0 13347.0, 13347.0 -0.71
BXD21/TyJ m 19480.0 0.0   1   0.0 0.0 19480.0, 19480.0 -0.2
BXD22/TyJ m 19167.0 0.0   1   0.0 0.0 19167.0, 19167.0 -0.22
BXD24/TyJ m 12283.0 0.0   1   0.0 0.0 12283.0, 12283.0 -0.8
BXD24/TyJ-Cep290rd16/J m 13334.0 0.0   1   0.0 0.0 13334.0, 13334.0 -0.71
BXD28/TyJ m 15181.0 231.0   2   163.0 0.0152 15018.0, 15345.0 -0.55
BXD29-Tlr4lps-2J/J m 34051.0 0.0   1   0.0 0.0 34051.0, 34051.0 1.02
BXD2/TyJ m 19384.0 0.0   1   0.0 0.0 19384.0, 19384.0 -0.2
BXD32/TyJ m 15370.0 0.0   1   0.0 0.0 15370.0, 15370.0 -0.54
BXD33/TyJ m 13601.0 0.0   1   0.0 0.0 13601.0, 13601.0 -0.69
BXD34/TyJ m 16250.0 0.0   1   0.0 0.0 16250.0, 16250.0 -0.47
BXD36/TyJ m 20952.0 0.0   1   0.0 0.0 20952.0, 20952.0 -0.07
BXD38/TyJ m 15010.0 0.0   1   0.0 0.0 15010.0, 15010.0 -0.57
BXD39/TyJ m 24154.0 0.0   1   0.0 0.0 24154.0, 24154.0 0.19
BXD40/TyJ m 14648.0 0.0   1   0.0 0.0 14648.0, 14648.0 -0.6
BXD42/TyJ m 19004.0 0.0   1   0.0 0.0 19004.0, 19004.0 -0.24
BXD5/TyJ m 22982.0 0.0   1   0.0 0.0 22982.0, 22982.0 0.1
BXD6/TyJ m 19108.0 0.0   1   0.0 0.0 19108.0, 19108.0 -0.23
BXD8/TyJ m 11885.0 0.0   1   0.0 0.0 11885.0, 11885.0 -0.83
BXD9/TyJ m 19386.0 0.0   1   0.0 0.0 19386.0, 19386.0 -0.2
BXH10/TyJ m 25454.0 0.0   1   0.0 0.0 25454.0, 25454.0 0.3
BXH19/TyJ m 24223.0 0.0   1   0.0 0.0 24223.0, 24223.0 0.2
BXH20/KccJ m 22650.0 0.0   1   0.0 0.0 22650.0, 22650.0 0.07
BXH22/KccJ m 17079.0 0.0   1   0.0 0.0 17079.0, 17079.0 -0.4
BXH2/TyJ m 30704.0 0.0   1   0.0 0.0 30704.0, 30704.0 0.74
BXH4/TyJ m 20588.0 6646.0   2   4699.0 0.323 15889.0, 25288.0 -0.1
BXH6/TyJ m 104622.0 0.0   1   0.0 0.0 104622.0, 104622.0 6.9
BXH7/TyJ m 9764.0 0.0   1   0.0 0.0 9764.0, 9764.0 -1.01
BXH8/TyJ m 37740.0 0.0   1   0.0 0.0 37740.0, 37740.0 1.33
BXH9/TyJ m 17678.0 0.0   1   0.0 0.0 17678.0, 17678.0 -0.35
C3H/HeJ m 11395.0 3599.0   2   2545.0 0.316 8850.0, 13939.0 -0.87
C57BL/6J m 14107.0 3368.0   5 1506.0 0.239 10248.0, 18984.0 -0.64
C57L/J m 11711.0 0.0   1   0.0 0.0 11711.0, 11711.0 -0.84
C58/J m 14665.0 0.0   1   0.0 0.0 14665.0, 14665.0 -0.6
CAST/EiJ m 23474.0 0.0   1   0.0 0.0 23474.0, 23474.0 0.14
CBA/J m 26286.0 0.0   1   0.0 0.0 26286.0, 26286.0 0.37
CE/J m 24347.0 0.0   1   0.0 0.0 24347.0, 24347.0 0.21
CXB11/HiAJ m 22643.0 15730.0   2   11123.0 0.695 11520.0, 33765.0 0.07
CXB12/HiAJ m 23315.0 112.0   2   79.5 0.00482 23236.0, 23395.0 0.12
CXB13/HiAJ m 21848.0 5164.0   3 2982.0 0.236 15891.0, 25050.0 0.0
CXB1/ByJ m 32341.0 24083.0   3 13904.0 0.745 15307.0, 59894.0 0.88
CXB2/ByJ m 17914.0 7300.0   3 4214.0 0.407 9497.0, 22506.0 -0.33
CXB3/ByJ m 32418.0 1808.0   2   1279.0 0.0558 31139.0, 33696.0 0.88
CXB4/ByJ m 43020.0 25527.0   2   18050.0 0.593 24969.0, 61070.0 1.77
CXB6/ByJ m 18920.0 6468.0   3 3734.0 0.342 12851.0, 25723.0 -0.24
CXB7/ByJ m 38234.0 10966.0   2   7754.0 0.287 30480.0, 45988.0 1.37
CXB8/HiAJ m 32467.0 7379.0   3 4260.0 0.227 24495.0, 39057.0 0.89
CXB9/HiAJ m 19669.0 5815.0   3 3357.0 0.296 15464.0, 26305.0 -0.18
DBA/2J m 18081.0 5377.0   4 2688.0 0.297 14228.0, 26037.0 -0.31
FVB/NJ m 8136.0 0.0   1   0.0 0.0 8136.0, 8136.0 -1.14
I/LnJ m 29686.0 0.0   1   0.0 0.0 29686.0, 29686.0 0.65
KK/HlJ m 36865.0 0.0   1   0.0 0.0 36865.0, 36865.0 1.25
LG/J m 42471.0 0.0   1   0.0 0.0 42471.0, 42471.0 1.72
LP/J m 15552.0 0.0   1   0.0 0.0 15552.0, 15552.0 -0.52
MA/MyJ m 11931.0 0.0   1   0.0 0.0 11931.0, 11931.0 -0.83
NOD/ShiLtJ m 18838.0 0.0   1   0.0 0.0 18838.0, 18838.0 -0.25
NON/ShiLtJ m 32587.0 0.0   1   0.0 0.0 32587.0, 32587.0 0.9
NZW/LacJ m 15227.0 0.0   1   0.0 0.0 15227.0, 15227.0 -0.55
PL/J m 14729.0 0.0   1   0.0 0.0 14729.0, 14729.0 -0.59
RIIIS/J m 26445.0 0.0   1   0.0 0.0 26445.0, 26445.0 0.38
SEA/GnJ m 16856.0 0.0   1   0.0 0.0 16856.0, 16856.0 -0.41
SJL/J m 19477.0 0.0   1   0.0 0.0 19477.0, 19477.0 -0.2
SM/J m 7438.0 0.0   1   0.0 0.0 7438.0, 7438.0 -1.2
SWR/J m 15098.0 0.0   1   0.0 0.0 15098.0, 15098.0 -0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 28875.0 7168.8972 43443.952 14306.048
AXB19b/PgnJ m 30954.45 7168.8972 45523.402 16385.498
AXB24/PgnJ m 27328.75 7168.8972 41897.702 12759.798
BALB/cJ m 25525.6667 5853.3801 37421.1662 13630.1671
BXA16/PgnJ m 22672.4 7168.8972 37241.352 8103.448
BXD19/TyJ m 18272.85 7168.8972 32841.802 3703.898
BXD28/TyJ m 15181.4 7168.8972 29750.352 612.448
BXH4/TyJ m 20588.5 7168.8972 35157.452 6019.548
C3H/HeJ m 11394.7 7168.8972 25963.652 0.0
C57BL/6J m 14107.3 4534.0087 23321.5143 4893.0857
CXB11/HiAJ m 22642.6 7168.8972 37211.552 8073.648
CXB12/HiAJ m 23315.3 7168.8972 37884.252 8746.348
CXB13/HiAJ m 21848.2333 5853.3801 33743.7329 9952.7338
CXB1/ByJ m 32341.0667 5853.3801 44236.5662 20445.5671
CXB2/ByJ m 17914.1333 5853.3801 29809.6329 6018.6338
CXB3/ByJ m 32417.55 7168.8972 46986.502 17848.598
CXB4/ByJ m 43019.6 7168.8972 57588.552 28450.648
CXB6/ByJ m 18919.6 5853.3801 30815.0995 7024.1005
CXB7/ByJ m 38233.85 7168.8972 52802.802 23664.898
CXB8/HiAJ m 32467.4333 5853.3801 44362.9329 20571.9338
CXB9/HiAJ m 19669.2 5853.3801 31564.6995 7773.7005
DBA/2J m 18080.7 5069.1758 28382.5048 7778.8952




  GWAS USING LINEAR MIXED MODELS