Project measure / variable:   HMDPpheno6   HP_lactate

ID, description, units MPD:50147   HP_lactate   liver 3-(4-hydroxyphenyl)lactate (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver 3-(4-hydroxyphenyl)lactate (16h fast), relative abundance

AXB19a/PgnJBXA14/PgnJBXA4/PgnJBXD33/TyJBXD14/TyJAXB8/PgnJCE/JBXA24/PgnJNON/ShiLtJAXB19/PgnJCXB8/HiAJBXD8/TyJAXB19b/PgnJAXB10/PgnJAXB15/PgnJBXA26/PgnJCXB13/HiAJSM/JBXA13/PgnJC58/JBXD5/TyJBXA16/PgnJCXB7/ByJAXB6/PgnJC3H/HeJBXD42/TyJAXB1/PgnJA/JBXH10/TyJBXD19/TyJSWR/JBXD1/TyJCXB12/HiAJCXB3/ByJCXB1/ByJAXB13/PgnJ129X1/SvJBXD24/TyJ-Cep290<rd16>/JCXB4/ByJBXH6/TyJBXA25/PgnJCXB9/HiAJBXD29-Tlr4<lps-2J>/JBXD21/TyJBXH20/KccJCXB11/HiAJBXH19/TyJBXD22/TyJBXD36/TyJAXB4/PgnJBXD32/TyJPL/JBXA12/PgnJBXA1/PgnJBXH2/TyJBXD39/TyJNZW/LacJBXH8/TyJKK/HlJBXH4/TyJLG/JBXD9/TyJBXD12/TyJDBA/2JC57BL/6JCXB2/ByJCAST/EiJLP/JI/LnJSEA/GnJBALB/cJAXB23/PgnJC57L/JBXD20/TyJBXA7/PgnJAXB24/PgnJBXD24/TyJBXD38/TyJBXH9/TyJCXB6/ByJBXD11/TyJBXD40/TyJBXD6/TyJBXD28/TyJBXA8/PgnJNOD/ShiLtJAXB5/PgnJBXH7/TyJBXH22/KccJBXD34/TyJCBA/JRIIIS/JBTBR T<+> Itpr3<tf>/JBXD15/TyJBXD2/TyJBXD13/TyJAKR/JAXB12/PgnJFVB/NJSJL/JBUB/BnJMA/MyJBXA11/PgnJBXD18/TyJAXB2/PgnJBXA2/PgnJ (no units) 15,00020,00025,00030,00035,00040,00045,00050,00055,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means25902   None
Median of the strain means24737   None
SD of the strain means± 7148
Coefficient of variation (CV)0.276
Min–max range of strain means13918   –   55431   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1107008162.676 52714674.4131 1.4717 0.1542
Residuals 34 1217818609.0038 35818194.3825


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 28551.0 0.0   1   0.0 0.0 28551.0, 28551.0 0.37
A/J m 30728.0 5152.0   2   3643.0 0.168 27085.0, 34371.0 0.68
AKR/J m 16700.0 0.0   1   0.0 0.0 16700.0, 16700.0 -1.29
AXB10/PgnJ m 33646.0 0.0   1   0.0 0.0 33646.0, 33646.0 1.08
AXB12/PgnJ m 16610.0 0.0   1   0.0 0.0 16610.0, 16610.0 -1.3
AXB13/PgnJ m 28916.0 0.0   1   0.0 0.0 28916.0, 28916.0 0.42
AXB15/PgnJ m 32725.0 0.0   1   0.0 0.0 32725.0, 32725.0 0.95
AXB19a/PgnJ m 55431.0 0.0   1   0.0 0.0 55431.0, 55431.0 4.13
AXB19b/PgnJ m 34304.0 4172.0   2   2950.0 0.122 31354.0, 37255.0 1.18
AXB19/PgnJ m 35692.0 0.0   1   0.0 0.0 35692.0, 35692.0 1.37
AXB1/PgnJ m 31015.0 0.0   1   0.0 0.0 31015.0, 31015.0 0.72
AXB23/PgnJ m 22173.0 0.0   1   0.0 0.0 22173.0, 22173.0 -0.52
AXB24/PgnJ m 21732.0 1240.0   2   877.0 0.057 20856.0, 22609.0 -0.58
AXB2/PgnJ m 14872.0 0.0   1   0.0 0.0 14872.0, 14872.0 -1.54
AXB4/PgnJ m 25043.0 0.0   1   0.0 0.0 25043.0, 25043.0 -0.12
AXB5/PgnJ m 19035.0 0.0   1   0.0 0.0 19035.0, 19035.0 -0.96
AXB6/PgnJ m 31154.0 0.0   1   0.0 0.0 31154.0, 31154.0 0.73
AXB8/PgnJ m 37728.0 0.0   1   0.0 0.0 37728.0, 37728.0 1.65
BALB/cJ m 22411.0 1901.0   3 1097.0 0.0848 20611.0, 24399.0 -0.49
BTBR T+ Itpr3tf/J m 17790.0 0.0   1   0.0 0.0 17790.0, 17790.0 -1.13
BUB/BnJ m 15850.0 0.0   1   0.0 0.0 15850.0, 15850.0 -1.41
BXA11/PgnJ m 15395.0 0.0   1   0.0 0.0 15395.0, 15395.0 -1.47
BXA12/PgnJ m 24749.0 0.0   1   0.0 0.0 24749.0, 24749.0 -0.16
BXA13/PgnJ m 32161.0 0.0   1   0.0 0.0 32161.0, 32161.0 0.88
BXA14/PgnJ m 41924.0 0.0   1   0.0 0.0 41924.0, 41924.0 2.24
BXA16/PgnJ m 31277.0 11749.0   2   8308.0 0.376 22969.0, 39584.0 0.75
BXA1/PgnJ m 24725.0 0.0   1   0.0 0.0 24725.0, 24725.0 -0.16
BXA24/PgnJ m 36052.0 0.0   1   0.0 0.0 36052.0, 36052.0 1.42
BXA25/PgnJ m 27132.0 0.0   1   0.0 0.0 27132.0, 27132.0 0.17
BXA26/PgnJ m 32571.0 0.0   1   0.0 0.0 32571.0, 32571.0 0.93
BXA2/PgnJ m 13918.0 0.0   1   0.0 0.0 13918.0, 13918.0 -1.68
BXA4/PgnJ m 41352.0 0.0   1   0.0 0.0 41352.0, 41352.0 2.16
BXA7/PgnJ m 21814.0 0.0   1   0.0 0.0 21814.0, 21814.0 -0.57
BXA8/PgnJ m 20157.0 0.0   1   0.0 0.0 20157.0, 20157.0 -0.8
BXD11/TyJ m 20767.0 0.0   1   0.0 0.0 20767.0, 20767.0 -0.72
BXD12/TyJ m 23544.0 0.0   1   0.0 0.0 23544.0, 23544.0 -0.33
BXD13/TyJ m 16798.0 0.0   1   0.0 0.0 16798.0, 16798.0 -1.27
BXD14/TyJ m 39275.0 0.0   1   0.0 0.0 39275.0, 39275.0 1.87
BXD15/TyJ m 17430.0 0.0   1   0.0 0.0 17430.0, 17430.0 -1.19
BXD18/TyJ m 15228.0 0.0   1   0.0 0.0 15228.0, 15228.0 -1.49
BXD19/TyJ m 30204.0 9542.0   2   6747.0 0.316 23457.0, 36951.0 0.6
BXD1/TyJ m 29581.0 0.0   1   0.0 0.0 29581.0, 29581.0 0.51
BXD20/TyJ m 22074.0 0.0   1   0.0 0.0 22074.0, 22074.0 -0.54
BXD21/TyJ m 26293.0 0.0   1   0.0 0.0 26293.0, 26293.0 0.05
BXD22/TyJ m 25457.0 0.0   1   0.0 0.0 25457.0, 25457.0 -0.06
BXD24/TyJ m 21360.0 0.0   1   0.0 0.0 21360.0, 21360.0 -0.64
BXD24/TyJ-Cep290rd16/J m 28324.0 0.0   1   0.0 0.0 28324.0, 28324.0 0.34
BXD28/TyJ m 20326.0 2428.0   2   1717.0 0.119 18609.0, 22043.0 -0.78
BXD29-Tlr4lps-2J/J m 26360.0 0.0   1   0.0 0.0 26360.0, 26360.0 0.06
BXD2/TyJ m 17400.0 0.0   1   0.0 0.0 17400.0, 17400.0 -1.19
BXD32/TyJ m 24914.0 0.0   1   0.0 0.0 24914.0, 24914.0 -0.14
BXD33/TyJ m 39752.0 0.0   1   0.0 0.0 39752.0, 39752.0 1.94
BXD34/TyJ m 18325.0 0.0   1   0.0 0.0 18325.0, 18325.0 -1.06
BXD36/TyJ m 25223.0 0.0   1   0.0 0.0 25223.0, 25223.0 -0.1
BXD38/TyJ m 21157.0 0.0   1   0.0 0.0 21157.0, 21157.0 -0.66
BXD39/TyJ m 24638.0 0.0   1   0.0 0.0 24638.0, 24638.0 -0.18
BXD40/TyJ m 20694.0 0.0   1   0.0 0.0 20694.0, 20694.0 -0.73
BXD42/TyJ m 31044.0 0.0   1   0.0 0.0 31044.0, 31044.0 0.72
BXD5/TyJ m 31586.0 0.0   1   0.0 0.0 31586.0, 31586.0 0.8
BXD6/TyJ m 20458.0 0.0   1   0.0 0.0 20458.0, 20458.0 -0.76
BXD8/TyJ m 34774.0 0.0   1   0.0 0.0 34774.0, 34774.0 1.24
BXD9/TyJ m 23658.0 0.0   1   0.0 0.0 23658.0, 23658.0 -0.31
BXH10/TyJ m 30352.0 0.0   1   0.0 0.0 30352.0, 30352.0 0.62
BXH19/TyJ m 25673.0 0.0   1   0.0 0.0 25673.0, 25673.0 -0.03
BXH20/KccJ m 26283.0 0.0   1   0.0 0.0 26283.0, 26283.0 0.05
BXH22/KccJ m 18472.0 0.0   1   0.0 0.0 18472.0, 18472.0 -1.04
BXH2/TyJ m 24667.0 0.0   1   0.0 0.0 24667.0, 24667.0 -0.17
BXH4/TyJ m 24295.0 5907.0   2   4177.0 0.243 20118.0, 28472.0 -0.22
BXH6/TyJ m 27811.0 0.0   1   0.0 0.0 27811.0, 27811.0 0.27
BXH7/TyJ m 18680.0 0.0   1   0.0 0.0 18680.0, 18680.0 -1.01
BXH8/TyJ m 24363.0 0.0   1   0.0 0.0 24363.0, 24363.0 -0.22
BXH9/TyJ m 21138.0 0.0   1   0.0 0.0 21138.0, 21138.0 -0.67
C3H/HeJ m 31120.0 5565.0   2   3935.0 0.179 27184.0, 35055.0 0.73
C57BL/6J m 23203.0 4446.0   5 1988.0 0.192 18850.0, 27894.0 -0.38
C57L/J m 22077.0 0.0   1   0.0 0.0 22077.0, 22077.0 -0.54
C58/J m 32004.0 0.0   1   0.0 0.0 32004.0, 32004.0 0.85
CAST/EiJ m 23016.0 0.0   1   0.0 0.0 23016.0, 23016.0 -0.4
CBA/J m 18058.0 0.0   1   0.0 0.0 18058.0, 18058.0 -1.1
CE/J m 37555.0 0.0   1   0.0 0.0 37555.0, 37555.0 1.63
CXB11/HiAJ m 26265.0 12262.0   2   8671.0 0.467 17594.0, 34936.0 0.05
CXB12/HiAJ m 29376.0 5410.0   2   3825.0 0.184 25551.0, 33202.0 0.49
CXB13/HiAJ m 32528.0 6553.0   3 3783.0 0.201 25171.0, 37742.0 0.93
CXB1/ByJ m 29107.0 11210.0   3 6472.0 0.385 20930.0, 41886.0 0.45
CXB2/ByJ m 23178.0 4408.0   3 2545.0 0.19 18364.0, 27016.0 -0.38
CXB3/ByJ m 29282.0 8969.0   2   6342.0 0.306 22940.0, 35624.0 0.47
CXB4/ByJ m 28260.0 1593.0   2   1126.0 0.0564 27134.0, 29386.0 0.33
CXB6/ByJ m 21097.0 357.0   3 206.0 0.0169 20714.0, 21421.0 -0.67
CXB7/ByJ m 31271.0 2334.0   2   1650.0 0.0746 29621.0, 32922.0 0.75
CXB8/HiAJ m 35505.0 7019.0   3 4052.0 0.198 28746.0, 42758.0 1.34
CXB9/HiAJ m 26462.0 4414.0   3 2548.0 0.167 23861.0, 31558.0 0.08
DBA/2J m 23334.0 1050.0   4 525.0 0.045 21996.0, 24564.0 -0.36
FVB/NJ m 16458.0 0.0   1   0.0 0.0 16458.0, 16458.0 -1.32
I/LnJ m 22563.0 0.0   1   0.0 0.0 22563.0, 22563.0 -0.47
KK/HlJ m 24317.0 0.0   1   0.0 0.0 24317.0, 24317.0 -0.22
LG/J m 24083.0 0.0   1   0.0 0.0 24083.0, 24083.0 -0.25
LP/J m 22891.0 0.0   1   0.0 0.0 22891.0, 22891.0 -0.42
MA/MyJ m 15508.0 0.0   1   0.0 0.0 15508.0, 15508.0 -1.45
NOD/ShiLtJ m 19602.0 0.0   1   0.0 0.0 19602.0, 19602.0 -0.88
NON/ShiLtJ m 35701.0 0.0   1   0.0 0.0 35701.0, 35701.0 1.37
NZW/LacJ m 24594.0 0.0   1   0.0 0.0 24594.0, 24594.0 -0.18
PL/J m 24868.0 0.0   1   0.0 0.0 24868.0, 24868.0 -0.14
RIIIS/J m 17876.0 0.0   1   0.0 0.0 17876.0, 17876.0 -1.12
SEA/GnJ m 22478.0 0.0   1   0.0 0.0 22478.0, 22478.0 -0.48
SJL/J m 16018.0 0.0   1   0.0 0.0 16018.0, 16018.0 -1.38
SM/J m 32231.0 0.0   1   0.0 0.0 32231.0, 32231.0 0.89
SWR/J m 30058.0 0.0   1   0.0 0.0 30058.0, 30058.0 0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 30728.0 4231.9141 39328.2843 22127.7157
AXB19b/PgnJ m 34304.5 4231.9141 42904.7843 25704.2157
AXB24/PgnJ m 21732.3 4231.9141 30332.5843 13132.0157
BALB/cJ m 22411.1667 3455.3434 29433.2694 15389.064
BXA16/PgnJ m 31276.7 4231.9141 39876.9843 22676.4157
BXD19/TyJ m 30204.05 4231.9141 38804.3343 21603.7657
BXD28/TyJ m 20326.05 4231.9141 28926.3343 11725.7657
BXH4/TyJ m 24294.75 4231.9141 32895.0343 15694.4657
C3H/HeJ m 31119.55 4231.9141 39719.8343 22519.2657
C57BL/6J m 23202.82 2676.4975 28642.1174 17763.5226
CXB11/HiAJ m 26265.25 4231.9141 34865.5343 17664.9657
CXB12/HiAJ m 29376.15 4231.9141 37976.4343 20775.8657
CXB13/HiAJ m 32527.7 3455.3434 39549.8027 25505.5973
CXB1/ByJ m 29107.2667 3455.3434 36129.3694 22085.164
CXB2/ByJ m 23178.4 3455.3434 30200.5027 16156.2973
CXB3/ByJ m 29281.5 4231.9141 37881.7843 20681.2157
CXB4/ByJ m 28260.1 4231.9141 36860.3843 19659.8157
CXB6/ByJ m 21096.9333 3455.3434 28119.036 14074.8306
CXB7/ByJ m 31271.45 4231.9141 39871.7343 22671.1657
CXB8/HiAJ m 35505.4333 3455.3434 42527.536 28483.3306
CXB9/HiAJ m 26462.3667 3455.3434 33484.4694 19440.264
DBA/2J m 23334.425 2992.4152 29415.7443 17253.1057




  GWAS USING LINEAR MIXED MODELS

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