Project measure / variable:   HMDPpheno6   Tyr

ID, description, units MPD:50146   Tyr   liver tyrosine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver tyrosine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means9631539   None
Median of the strain means10113336   None
SD of the strain means± 2663975
Coefficient of variation (CV)0.277
Min–max range of strain means3735304   –   14481470   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 320324459118991.0 15253545672332.9 5.2993 < 0.0001
Residuals 34 97865163583252.6 2878387164213.31


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 6359756.0 0.0   1   0.0 0.0 6359756.0, 6359756.0 -1.23
A/J m 10390417.0 1390954.0   2   983553.0 0.134 9406864.0, 11373970.0 0.28
AKR/J m 10312922.0 0.0   1   0.0 0.0 10312922.0, 10312922.0 0.26
AXB10/PgnJ m 10292208.0 0.0   1   0.0 0.0 10292208.0, 10292208.0 0.25
AXB12/PgnJ m 10815858.0 0.0   1   0.0 0.0 10815858.0, 10815858.0 0.44
AXB13/PgnJ m 12025917.0 0.0   1   0.0 0.0 12025917.0, 12025917.0 0.9
AXB15/PgnJ m 10478123.0 0.0   1   0.0 0.0 10478123.0, 10478123.0 0.32
AXB19a/PgnJ m 10802547.0 0.0   1   0.0 0.0 10802547.0, 10802547.0 0.44
AXB19b/PgnJ m 11619680.0 145423.0   2   102829.0 0.0125 11516851.0, 11722510.0 0.75
AXB19/PgnJ m 10890145.0 0.0   1   0.0 0.0 10890145.0, 10890145.0 0.47
AXB1/PgnJ m 8106144.0 0.0   1   0.0 0.0 8106144.0, 8106144.0 -0.57
AXB23/PgnJ m 9570181.0 0.0   1   0.0 0.0 9570181.0, 9570181.0 -0.02
AXB24/PgnJ m 7401799.0 4046341.0   2   2861195.0 0.547 4540604.0, 10262994.0 -0.84
AXB2/PgnJ m 10000862.0 0.0   1   0.0 0.0 10000862.0, 10000862.0 0.14
AXB4/PgnJ m 10337549.0 0.0   1   0.0 0.0 10337549.0, 10337549.0 0.27
AXB5/PgnJ m 9501597.0 0.0   1   0.0 0.0 9501597.0, 9501597.0 -0.05
AXB6/PgnJ m 12412848.0 0.0   1   0.0 0.0 12412848.0, 12412848.0 1.04
AXB8/PgnJ m 11570054.0 0.0   1   0.0 0.0 11570054.0, 11570054.0 0.73
BALB/cJ m 9478037.0 650408.0   3 375513.0 0.0686 8727619.0, 9879410.0 -0.06
BTBR T+ Itpr3tf/J m 4366720.0 0.0   1   0.0 0.0 4366720.0, 4366720.0 -1.98
BUB/BnJ m 11921012.0 0.0   1   0.0 0.0 11921012.0, 11921012.0 0.86
BXA11/PgnJ m 10084956.0 0.0   1   0.0 0.0 10084956.0, 10084956.0 0.17
BXA12/PgnJ m 4512062.0 0.0   1   0.0 0.0 4512062.0, 4512062.0 -1.92
BXA13/PgnJ m 9422540.0 0.0   1   0.0 0.0 9422540.0, 9422540.0 -0.08
BXA14/PgnJ m 14481470.0 0.0   1   0.0 0.0 14481470.0, 14481470.0 1.82
BXA16/PgnJ m 8426172.0 1595228.0   2   1127996.0 0.189 7298176.0, 9554168.0 -0.45
BXA1/PgnJ m 10574010.0 0.0   1   0.0 0.0 10574010.0, 10574010.0 0.35
BXA24/PgnJ m 13506130.0 0.0   1   0.0 0.0 13506130.0, 13506130.0 1.45
BXA25/PgnJ m 7918720.0 0.0   1   0.0 0.0 7918720.0, 7918720.0 -0.64
BXA26/PgnJ m 10703266.0 0.0   1   0.0 0.0 10703266.0, 10703266.0 0.4
BXA2/PgnJ m 12267131.0 0.0   1   0.0 0.0 12267131.0, 12267131.0 0.99
BXA4/PgnJ m 8878600.0 0.0   1   0.0 0.0 8878600.0, 8878600.0 -0.28
BXA7/PgnJ m 13370599.0 0.0   1   0.0 0.0 13370599.0, 13370599.0 1.4
BXA8/PgnJ m 10958803.0 0.0   1   0.0 0.0 10958803.0, 10958803.0 0.5
BXD11/TyJ m 11240038.0 0.0   1   0.0 0.0 11240038.0, 11240038.0 0.6
BXD12/TyJ m 3943559.0 0.0   1   0.0 0.0 3943559.0, 3943559.0 -2.14
BXD13/TyJ m 13356572.0 0.0   1   0.0 0.0 13356572.0, 13356572.0 1.4
BXD14/TyJ m 10819094.0 0.0   1   0.0 0.0 10819094.0, 10819094.0 0.45
BXD15/TyJ m 11274050.0 0.0   1   0.0 0.0 11274050.0, 11274050.0 0.62
BXD18/TyJ m 4729106.0 0.0   1   0.0 0.0 4729106.0, 4729106.0 -1.84
BXD19/TyJ m 6468564.0 1420811.0   2   1004665.0 0.22 5463899.0, 7473228.0 -1.19
BXD1/TyJ m 5046611.0 0.0   1   0.0 0.0 5046611.0, 5046611.0 -1.72
BXD20/TyJ m 3742764.0 0.0   1   0.0 0.0 3742764.0, 3742764.0 -2.21
BXD21/TyJ m 5027514.0 0.0   1   0.0 0.0 5027514.0, 5027514.0 -1.73
BXD22/TyJ m 13531435.0 0.0   1   0.0 0.0 13531435.0, 13531435.0 1.46
BXD24/TyJ m 9515504.0 0.0   1   0.0 0.0 9515504.0, 9515504.0 -0.04
BXD24/TyJ-Cep290rd16/J m 7591920.0 0.0   1   0.0 0.0 7591920.0, 7591920.0 -0.77
BXD28/TyJ m 11677772.0 1794585.0   2   1268964.0 0.154 10408809.0, 12946736.0 0.77
BXD29-Tlr4lps-2J/J m 8008974.0 0.0   1   0.0 0.0 8008974.0, 8008974.0 -0.61
BXD2/TyJ m 10858679.0 0.0   1   0.0 0.0 10858679.0, 10858679.0 0.46
BXD32/TyJ m 12223053.0 0.0   1   0.0 0.0 12223053.0, 12223053.0 0.97
BXD33/TyJ m 7942860.0 0.0   1   0.0 0.0 7942860.0, 7942860.0 -0.63
BXD34/TyJ m 10696168.0 0.0   1   0.0 0.0 10696168.0, 10696168.0 0.4
BXD36/TyJ m 6250696.0 0.0   1   0.0 0.0 6250696.0, 6250696.0 -1.27
BXD38/TyJ m 9500969.0 0.0   1   0.0 0.0 9500969.0, 9500969.0 -0.05
BXD39/TyJ m 11798813.0 0.0   1   0.0 0.0 11798813.0, 11798813.0 0.81
BXD40/TyJ m 6606074.0 0.0   1   0.0 0.0 6606074.0, 6606074.0 -1.14
BXD42/TyJ m 7164700.0 0.0   1   0.0 0.0 7164700.0, 7164700.0 -0.93
BXD5/TyJ m 12049040.0 0.0   1   0.0 0.0 12049040.0, 12049040.0 0.91
BXD6/TyJ m 8172652.0 0.0   1   0.0 0.0 8172652.0, 8172652.0 -0.55
BXD8/TyJ m 7823174.0 0.0   1   0.0 0.0 7823174.0, 7823174.0 -0.68
BXD9/TyJ m 7329002.0 0.0   1   0.0 0.0 7329002.0, 7329002.0 -0.86
BXH10/TyJ m 9914593.0 0.0   1   0.0 0.0 9914593.0, 9914593.0 0.11
BXH19/TyJ m 10141716.0 0.0   1   0.0 0.0 10141716.0, 10141716.0 0.19
BXH20/KccJ m 10843531.0 0.0   1   0.0 0.0 10843531.0, 10843531.0 0.45
BXH22/KccJ m 11260732.0 0.0   1   0.0 0.0 11260732.0, 11260732.0 0.61
BXH2/TyJ m 10060430.0 0.0   1   0.0 0.0 10060430.0, 10060430.0 0.16
BXH4/TyJ m 10373857.0 353668.0   2   250081.0 0.0341 10123776.0, 10623938.0 0.28
BXH6/TyJ m 12799490.0 0.0   1   0.0 0.0 12799490.0, 12799490.0 1.19
BXH7/TyJ m 7820856.0 0.0   1   0.0 0.0 7820856.0, 7820856.0 -0.68
BXH8/TyJ m 12469650.0 0.0   1   0.0 0.0 12469650.0, 12469650.0 1.07
BXH9/TyJ m 9928130.0 0.0   1   0.0 0.0 9928130.0, 9928130.0 0.11
C3H/HeJ m 12178202.0 1891389.0   2   1337414.0 0.155 10840788.0, 13515616.0 0.96
C57BL/6J m 14375914.0 1369031.0   5 612249.0 0.0952 12336707.0, 16047922.0 1.78
C57L/J m 3881948.0 0.0   1   0.0 0.0 3881948.0, 3881948.0 -2.16
C58/J m 11346409.0 0.0   1   0.0 0.0 11346409.0, 11346409.0 0.64
CAST/EiJ m 3735304.0 0.0   1   0.0 0.0 3735304.0, 3735304.0 -2.21
CBA/J m 9953175.0 0.0   1   0.0 0.0 9953175.0, 9953175.0 0.12
CE/J m 10639683.0 0.0   1   0.0 0.0 10639683.0, 10639683.0 0.38
CXB11/HiAJ m 7534594.0 4454876.0   2   3150073.0 0.591 4384522.0, 10684667.0 -0.79
CXB12/HiAJ m 12933812.0 78832.0   2   55742.0 0.0061 12878070.0, 12989555.0 1.24
CXB13/HiAJ m 13131485.0 313675.0   3 181100.0 0.0239 12856202.0, 13472981.0 1.31
CXB1/ByJ m 9305856.0 2425556.0   3 1400396.0 0.261 7077434.0, 11889395.0 -0.12
CXB2/ByJ m 11765695.0 1543138.0   3 890931.0 0.131 10856458.0, 13547431.0 0.8
CXB3/ByJ m 11370388.0 1098210.0   2   776552.0 0.0966 10593836.0, 12146940.0 0.65
CXB4/ByJ m 11698214.0 264956.0   2   187352.0 0.0226 11510861.0, 11885566.0 0.78
CXB6/ByJ m 11174034.0 1288276.0   3 743787.0 0.115 9947411.0, 12516182.0 0.58
CXB7/ByJ m 11999690.0 2051045.0   2   1450307.0 0.171 10549383.0, 13449998.0 0.89
CXB8/HiAJ m 14109927.0 1086247.0   3 627145.0 0.077 12890881.0, 14975139.0 1.68
CXB9/HiAJ m 12834153.0 1841460.0   3 1063167.0 0.143 11657381.0, 14956286.0 1.2
DBA/2J m 6743265.0 1314613.0   4 657307.0 0.195 5611842.0, 8262822.0 -1.08
FVB/NJ m 5131554.0 0.0   1   0.0 0.0 5131554.0, 5131554.0 -1.69
I/LnJ m 7301198.0 0.0   1   0.0 0.0 7301198.0, 7301198.0 -0.87
KK/HlJ m 8035870.0 0.0   1   0.0 0.0 8035870.0, 8035870.0 -0.6
LG/J m 8474462.0 0.0   1   0.0 0.0 8474462.0, 8474462.0 -0.43
LP/J m 4762076.0 0.0   1   0.0 0.0 4762076.0, 4762076.0 -1.83
MA/MyJ m 9821992.0 0.0   1   0.0 0.0 9821992.0, 9821992.0 0.07
NOD/ShiLtJ m 12327894.0 0.0   1   0.0 0.0 12327894.0, 12327894.0 1.01
NON/ShiLtJ m 11538193.0 0.0   1   0.0 0.0 11538193.0, 11538193.0 0.72
NZW/LacJ m 9619336.0 0.0   1   0.0 0.0 9619336.0, 9619336.0 0.0
PL/J m 12754759.0 0.0   1   0.0 0.0 12754759.0, 12754759.0 1.17
RIIIS/J m 7305286.0 0.0   1   0.0 0.0 7305286.0, 7305286.0 -0.87
SEA/GnJ m 9021299.0 0.0   1   0.0 0.0 9021299.0, 9021299.0 -0.23
SJL/J m 5314448.0 0.0   1   0.0 0.0 5314448.0, 5314448.0 -1.62
SM/J m 7620855.0 0.0   1   0.0 0.0 7620855.0, 7620855.0 -0.75
SWR/J m 7440954.0 0.0   1   0.0 0.0 7440954.0, 7440954.0 -0.82


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 10390417.0 1199663.9455 12828427.4662 7952406.5338
AXB19b/PgnJ m 11619680.5 1199663.9455 14057690.9662 9181670.0338
AXB24/PgnJ m 7401798.75 1199663.9455 9839809.2162 4963788.2838
BALB/cJ m 9478037.0 979521.5098 11468664.21 7487409.79
BXA16/PgnJ m 8426171.75 1199663.9455 10864182.2162 5988161.2838
BXD19/TyJ m 6468563.75 1199663.9455 8906574.2162 4030553.2838
BXD28/TyJ m 11677772.5 1199663.9455 14115782.9662 9239762.0338
BXH4/TyJ m 10373857.0 1199663.9455 12811867.4662 7935846.5338
C3H/HeJ m 12178202.0 1199663.9455 14616212.4662 9740191.5338
C57BL/6J m 14375914.4 758734.0989 15917847.6065 12833981.1935
CXB11/HiAJ m 7534594.25 1199663.9455 9972604.7162 5096583.7838
CXB12/HiAJ m 12933812.5 1199663.9455 15371822.9662 10495802.0338
CXB13/HiAJ m 13131485.3333 979521.5098 15122112.5433 11140858.1234
CXB1/ByJ m 9305856.0 979521.5098 11296483.21 7315228.79
CXB2/ByJ m 11765694.6667 979521.5098 13756321.8766 9775067.4567
CXB3/ByJ m 11370388.0 1199663.9455 13808398.4662 8932377.5338
CXB4/ByJ m 11698213.5 1199663.9455 14136223.9662 9260203.0338
CXB6/ByJ m 11174034.3333 979521.5098 13164661.5433 9183407.1234
CXB7/ByJ m 11999690.5 1199663.9455 14437700.9662 9561680.0338
CXB8/HiAJ m 14109927.3333 979521.5098 16100554.5433 12119300.1234
CXB9/HiAJ m 12834152.6667 979521.5098 14824779.8766 10843525.4567
DBA/2J m 6743264.625 848290.511 8467198.3583 5019330.8917




  GWAS USING LINEAR MIXED MODELS