Project measure / variable:   HMDPpheno6   Phe

ID, description, units MPD:50145   Phe   liver phenylalanine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver phenylalanine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means34688159   None
Median of the strain means34008540   None
SD of the strain means± 6497362
Coefficient of variation (CV)0.187
Min–max range of strain means19549030   –   58381612   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 2357056428382450.0 112240782303926.0 9.8427 < 0.0001
Residuals 34 387717655355398.0 11403460451629.4


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 31366866.0 0.0   1   0.0 0.0 31366866.0, 31366866.0 -0.51
A/J m 30818489.0 2637708.0   2   1865141.0 0.0856 28953348.0, 32683630.0 -0.6
AKR/J m 27189784.0 0.0   1   0.0 0.0 27189784.0, 27189784.0 -1.15
AXB10/PgnJ m 39203580.0 0.0   1   0.0 0.0 39203580.0, 39203580.0 0.69
AXB12/PgnJ m 29413866.0 0.0   1   0.0 0.0 29413866.0, 29413866.0 -0.81
AXB13/PgnJ m 36435224.0 0.0   1   0.0 0.0 36435224.0, 36435224.0 0.27
AXB15/PgnJ m 31906288.0 0.0   1   0.0 0.0 31906288.0, 31906288.0 -0.43
AXB19a/PgnJ m 37056568.0 0.0   1   0.0 0.0 37056568.0, 37056568.0 0.36
AXB19b/PgnJ m 49576696.0 3745307.0   2   2648332.0 0.0755 46928364.0, 52225028.0 2.29
AXB19/PgnJ m 47975212.0 0.0   1   0.0 0.0 47975212.0, 47975212.0 2.04
AXB1/PgnJ m 37517644.0 0.0   1   0.0 0.0 37517644.0, 37517644.0 0.44
AXB23/PgnJ m 28339700.0 0.0   1   0.0 0.0 28339700.0, 28339700.0 -0.98
AXB24/PgnJ m 26703142.0 3177483.0   2   2246820.0 0.119 24456322.0, 28949962.0 -1.23
AXB2/PgnJ m 29015662.0 0.0   1   0.0 0.0 29015662.0, 29015662.0 -0.87
AXB4/PgnJ m 46354568.0 0.0   1   0.0 0.0 46354568.0, 46354568.0 1.8
AXB5/PgnJ m 27169816.0 0.0   1   0.0 0.0 27169816.0, 27169816.0 -1.16
AXB6/PgnJ m 42859272.0 0.0   1   0.0 0.0 42859272.0, 42859272.0 1.26
AXB8/PgnJ m 35551028.0 0.0   1   0.0 0.0 35551028.0, 35551028.0 0.13
BALB/cJ m 33888431.0 2869757.0   3 1656855.0 0.0847 30743642.0, 36365388.0 -0.12
BTBR T+ Itpr3tf/J m 30136144.0 0.0   1   0.0 0.0 30136144.0, 30136144.0 -0.7
BUB/BnJ m 38482808.0 0.0   1   0.0 0.0 38482808.0, 38482808.0 0.58
BXA11/PgnJ m 29565064.0 0.0   1   0.0 0.0 29565064.0, 29565064.0 -0.79
BXA12/PgnJ m 19549030.0 0.0   1   0.0 0.0 19549030.0, 19549030.0 -2.33
BXA13/PgnJ m 36570756.0 0.0   1   0.0 0.0 36570756.0, 36570756.0 0.29
BXA14/PgnJ m 42784320.0 0.0   1   0.0 0.0 42784320.0, 42784320.0 1.25
BXA16/PgnJ m 31335639.0 5295858.0   2   3744737.0 0.169 27590902.0, 35080376.0 -0.52
BXA1/PgnJ m 35353776.0 0.0   1   0.0 0.0 35353776.0, 35353776.0 0.1
BXA24/PgnJ m 44176640.0 0.0   1   0.0 0.0 44176640.0, 44176640.0 1.46
BXA25/PgnJ m 25014612.0 0.0   1   0.0 0.0 25014612.0, 25014612.0 -1.49
BXA26/PgnJ m 35771356.0 0.0   1   0.0 0.0 35771356.0, 35771356.0 0.17
BXA2/PgnJ m 38624584.0 0.0   1   0.0 0.0 38624584.0, 38624584.0 0.61
BXA4/PgnJ m 26444016.0 0.0   1   0.0 0.0 26444016.0, 26444016.0 -1.27
BXA7/PgnJ m 43453248.0 0.0   1   0.0 0.0 43453248.0, 43453248.0 1.35
BXA8/PgnJ m 30834092.0 0.0   1   0.0 0.0 30834092.0, 30834092.0 -0.59
BXD11/TyJ m 27342234.0 0.0   1   0.0 0.0 27342234.0, 27342234.0 -1.13
BXD12/TyJ m 42732532.0 0.0   1   0.0 0.0 42732532.0, 42732532.0 1.24
BXD13/TyJ m 33076336.0 0.0   1   0.0 0.0 33076336.0, 33076336.0 -0.25
BXD14/TyJ m 37210756.0 0.0   1   0.0 0.0 37210756.0, 37210756.0 0.39
BXD15/TyJ m 33188438.0 0.0   1   0.0 0.0 33188438.0, 33188438.0 -0.23
BXD18/TyJ m 25254780.0 0.0   1   0.0 0.0 25254780.0, 25254780.0 -1.45
BXD19/TyJ m 28364043.0 2047582.0   2   1447859.0 0.0722 26916184.0, 29811902.0 -0.97
BXD1/TyJ m 32170448.0 0.0   1   0.0 0.0 32170448.0, 32170448.0 -0.39
BXD20/TyJ m 33168580.0 0.0   1   0.0 0.0 33168580.0, 33168580.0 -0.23
BXD21/TyJ m 22074188.0 0.0   1   0.0 0.0 22074188.0, 22074188.0 -1.94
BXD22/TyJ m 41746932.0 0.0   1   0.0 0.0 41746932.0, 41746932.0 1.09
BXD24/TyJ m 29205770.0 0.0   1   0.0 0.0 29205770.0, 29205770.0 -0.84
BXD24/TyJ-Cep290rd16/J m 28683830.0 0.0   1   0.0 0.0 28683830.0, 28683830.0 -0.92
BXD28/TyJ m 33866046.0 4541082.0   2   3211030.0 0.134 30655016.0, 37077076.0 -0.13
BXD29-Tlr4lps-2J/J m 35165040.0 0.0   1   0.0 0.0 35165040.0, 35165040.0 0.07
BXD2/TyJ m 39030844.0 0.0   1   0.0 0.0 39030844.0, 39030844.0 0.67
BXD32/TyJ m 39395164.0 0.0   1   0.0 0.0 39395164.0, 39395164.0 0.72
BXD33/TyJ m 39286440.0 0.0   1   0.0 0.0 39286440.0, 39286440.0 0.71
BXD34/TyJ m 34128648.0 0.0   1   0.0 0.0 34128648.0, 34128648.0 -0.09
BXD36/TyJ m 27971576.0 0.0   1   0.0 0.0 27971576.0, 27971576.0 -1.03
BXD38/TyJ m 27880468.0 0.0   1   0.0 0.0 27880468.0, 27880468.0 -1.05
BXD39/TyJ m 33875900.0 0.0   1   0.0 0.0 33875900.0, 33875900.0 -0.13
BXD40/TyJ m 33260946.0 0.0   1   0.0 0.0 33260946.0, 33260946.0 -0.22
BXD42/TyJ m 29831372.0 0.0   1   0.0 0.0 29831372.0, 29831372.0 -0.75
BXD5/TyJ m 39843612.0 0.0   1   0.0 0.0 39843612.0, 39843612.0 0.79
BXD6/TyJ m 30704030.0 0.0   1   0.0 0.0 30704030.0, 30704030.0 -0.61
BXD8/TyJ m 28757384.0 0.0   1   0.0 0.0 28757384.0, 28757384.0 -0.91
BXD9/TyJ m 32552964.0 0.0   1   0.0 0.0 32552964.0, 32552964.0 -0.33
BXH10/TyJ m 40530376.0 0.0   1   0.0 0.0 40530376.0, 40530376.0 0.9
BXH19/TyJ m 35414160.0 0.0   1   0.0 0.0 35414160.0, 35414160.0 0.11
BXH20/KccJ m 39028044.0 0.0   1   0.0 0.0 39028044.0, 39028044.0 0.67
BXH22/KccJ m 34956044.0 0.0   1   0.0 0.0 34956044.0, 34956044.0 0.04
BXH2/TyJ m 40192652.0 0.0   1   0.0 0.0 40192652.0, 40192652.0 0.85
BXH4/TyJ m 35713474.0 1074064.0   2   759478.0 0.0301 34953996.0, 36472952.0 0.16
BXH6/TyJ m 39752364.0 0.0   1   0.0 0.0 39752364.0, 39752364.0 0.78
BXH7/TyJ m 31351988.0 0.0   1   0.0 0.0 31351988.0, 31351988.0 -0.51
BXH8/TyJ m 42101984.0 0.0   1   0.0 0.0 42101984.0, 42101984.0 1.14
BXH9/TyJ m 31948736.0 0.0   1   0.0 0.0 31948736.0, 31948736.0 -0.42
C3H/HeJ m 33573617.0 5252891.0   2   3714355.0 0.156 29859262.0, 37287972.0 -0.17
C57BL/6J m 43877167.0 3414124.0   5 1526843.0 0.0778 37919348.0, 46326988.0 1.41
C57L/J m 22812062.0 0.0   1   0.0 0.0 22812062.0, 22812062.0 -1.83
C58/J m 58381612.0 0.0   1   0.0 0.0 58381612.0, 58381612.0 3.65
CAST/EiJ m 32527054.0 0.0   1   0.0 0.0 32527054.0, 32527054.0 -0.33
CBA/J m 28837448.0 0.0   1   0.0 0.0 28837448.0, 28837448.0 -0.9
CE/J m 34384576.0 0.0   1   0.0 0.0 34384576.0, 34384576.0 -0.05
CXB11/HiAJ m 32265283.0 1043666.0   2   737983.0 0.0323 31527300.0, 33003266.0 -0.37
CXB12/HiAJ m 43901900.0 1300307.0   2   919456.0 0.0296 42982444.0, 44821356.0 1.42
CXB13/HiAJ m 42150955.0 1730530.0   3 999122.0 0.0411 41057104.0, 44146104.0 1.15
CXB1/ByJ m 33656745.0 4020081.0   3 2320995.0 0.119 30619742.0, 38215560.0 -0.16
CXB2/ByJ m 40605796.0 4186796.0   3 2417248.0 0.103 35828992.0, 43639076.0 0.91
CXB3/ByJ m 37349878.0 3564115.0   2   2520210.0 0.0954 34829668.0, 39870088.0 0.41
CXB4/ByJ m 36185345.0 3734495.0   2   2640687.0 0.103 33544658.0, 38826032.0 0.23
CXB6/ByJ m 37038030.0 5298428.0   3 3059049.0 0.143 32262214.0, 42737588.0 0.36
CXB7/ByJ m 40414834.0 6318443.0   2   4467814.0 0.156 35947020.0, 44882648.0 0.88
CXB8/HiAJ m 48396644.0 2290683.0   3 1322526.0 0.0473 46528016.0, 50952192.0 2.11
CXB9/HiAJ m 39394785.0 742164.0   3 428489.0 0.0188 38776176.0, 40217704.0 0.72
DBA/2J m 25783566.0 699728.0   4 349864.0 0.0271 24878236.0, 26341372.0 -1.37
FVB/NJ m 26915876.0 0.0   1   0.0 0.0 26915876.0, 26915876.0 -1.2
I/LnJ m 35883236.0 0.0   1   0.0 0.0 35883236.0, 35883236.0 0.18
KK/HlJ m 29801748.0 0.0   1   0.0 0.0 29801748.0, 29801748.0 -0.75
LG/J m 30434858.0 0.0   1   0.0 0.0 30434858.0, 30434858.0 -0.65
LP/J m 34130812.0 0.0   1   0.0 0.0 34130812.0, 34130812.0 -0.09
MA/MyJ m 26792318.0 0.0   1   0.0 0.0 26792318.0, 26792318.0 -1.22
NOD/ShiLtJ m 39123060.0 0.0   1   0.0 0.0 39123060.0, 39123060.0 0.68
NON/ShiLtJ m 36739548.0 0.0   1   0.0 0.0 36739548.0, 36739548.0 0.32
NZW/LacJ m 28610120.0 0.0   1   0.0 0.0 28610120.0, 28610120.0 -0.94
PL/J m 42816152.0 0.0   1   0.0 0.0 42816152.0, 42816152.0 1.25
RIIIS/J m 29221008.0 0.0   1   0.0 0.0 29221008.0, 29221008.0 -0.84
SEA/GnJ m 34359012.0 0.0   1   0.0 0.0 34359012.0, 34359012.0 -0.05
SJL/J m 28322508.0 0.0   1   0.0 0.0 28322508.0, 28322508.0 -0.98
SM/J m 33369346.0 0.0   1   0.0 0.0 33369346.0, 33369346.0 -0.2
SWR/J m 41690920.0 0.0   1   0.0 0.0 41690920.0, 41690920.0 1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 30818489.0 2387829.6057 35671142.6054 25965835.3946
AXB19b/PgnJ m 49576696.0 2387829.6057 54429349.6054 44724042.3946
AXB24/PgnJ m 26703142.0 2387829.6057 31555795.6054 21850488.3946
BALB/cJ m 33888431.3333 1949654.7089 37850606.4105 29926256.2561
BXA16/PgnJ m 31335639.0 2387829.6057 36188292.6054 26482985.3946
BXD19/TyJ m 28364043.0 2387829.6057 33216696.6054 23511389.3946
BXD28/TyJ m 33866046.0 2387829.6057 38718699.6054 29013392.3946
BXH4/TyJ m 35713474.0 2387829.6057 40566127.6054 30860820.3946
C3H/HeJ m 33573617.0 2387829.6057 38426270.6054 28720963.3946
C57BL/6J m 43877167.2 1510196.0437 46946254.8177 40808079.5823
CXB11/HiAJ m 32265283.0 2387829.6057 37117936.6054 27412629.3946
CXB12/HiAJ m 43901900.0 2387829.6057 48754553.6054 39049246.3946
CXB13/HiAJ m 42150954.6667 1949654.7089 46113129.7439 38188779.5895
CXB1/ByJ m 33656744.6667 1949654.7089 37618919.7439 29694569.5895
CXB2/ByJ m 40605796.0 1949654.7089 44567971.0772 36643620.9228
CXB3/ByJ m 37349878.0 2387829.6057 42202531.6054 32497224.3946
CXB4/ByJ m 36185345.0 2387829.6057 41037998.6054 31332691.3946
CXB6/ByJ m 37038030.0 1949654.7089 41000205.0772 33075854.9228
CXB7/ByJ m 40414834.0 2387829.6057 45267487.6054 35562180.3946
CXB8/HiAJ m 48396644.0 1949654.7089 52358819.0772 44434468.9228
CXB9/HiAJ m 39394785.3333 1949654.7089 43356960.4105 35432610.2561
DBA/2J m 25783566.5 1688450.5065 29214910.7711 22352222.2289




  GWAS USING LINEAR MIXED MODELS