Project measure / variable:   HMDPpheno6   Lys

ID, description, units MPD:50143   Lys   liver lysine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver lysine (16h fast), relative abundance

C58/JAXB1/PgnJAXB19/PgnJBXD32/TyJCXB8/HiAJAXB19a/PgnJAXB19b/PgnJBXA14/PgnJBXH6/TyJBXA7/PgnJC57BL/6JAXB4/PgnJBXA24/PgnJBXA26/PgnJBUB/BnJCXB13/HiAJCXB12/HiAJBXD22/TyJAXB6/PgnJBXD33/TyJNOD/ShiLtJBXA2/PgnJBXH10/TyJBXD42/TyJAXB15/PgnJSWR/JBXD5/TyJBXD2/TyJCXB2/ByJBXD38/TyJCXB3/ByJBXD34/TyJBXD14/TyJCXB9/HiAJBXD12/TyJAXB10/PgnJBXH20/KccJBXD20/TyJBXD29-Tlr4<lps-2J>/JBXD15/TyJBXD39/TyJCE/JCXB4/ByJBXA1/PgnJBXD24/TyJAXB8/PgnJBXH8/TyJBXA16/PgnJNON/ShiLtJBXH2/TyJCXB7/ByJBXD28/TyJBALB/cJBXD8/TyJI/LnJBXD13/TyJAXB23/PgnJBXH7/TyJBXA13/PgnJBXD6/TyJBXD1/TyJAXB13/PgnJCXB6/ByJRIIIS/JBXH4/TyJLP/JC3H/HeJBXA25/PgnJBXH22/KccJKK/HlJBXA11/PgnJBXD40/TyJCXB1/ByJBXH9/TyJPL/JCXB11/HiAJNZW/LacJBXA8/PgnJCAST/EiJ129X1/SvJBXD19/TyJBXD24/TyJ-Cep290<rd16>/JAXB12/PgnJSEA/GnJBXD9/TyJA/JBXH19/TyJLG/JSM/JCBA/JDBA/2JBTBR T<+> Itpr3<tf>/JBXD18/TyJAXB2/PgnJAXB24/PgnJAXB5/PgnJBXD21/TyJBXD36/TyJBXD11/TyJFVB/NJMA/MyJC57L/JBXA4/PgnJAKR/JSJL/JBXA12/PgnJ (no units) 1,500,0002,000,0002,500,0003,000,0003,500,0004,000,0004,500,0005,000,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means2833044   None
Median of the strain means2796974   None
SD of the strain means± 473760
Coefficient of variation (CV)0.167
Min–max range of strain means1546753   –   5083681   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 6455166523984.67 307388882094.508 7.0023 < 0.0001
Residuals 34 1492542943672.72 43898321872.7271


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 2579510.0 0.0   1   0.0 0.0 2579510.0, 2579510.0 -0.54
A/J m 2522484.0 30178.0   2   21339.0 0.012 2501145.0, 2543823.0 -0.66
AKR/J m 2003622.0 0.0   1   0.0 0.0 2003622.0, 2003622.0 -1.75
AXB10/PgnJ m 2941374.0 0.0   1   0.0 0.0 2941374.0, 2941374.0 0.23
AXB12/PgnJ m 2564573.0 0.0   1   0.0 0.0 2564573.0, 2564573.0 -0.57
AXB13/PgnJ m 2721992.0 0.0   1   0.0 0.0 2721992.0, 2721992.0 -0.23
AXB15/PgnJ m 3093475.0 0.0   1   0.0 0.0 3093475.0, 3093475.0 0.55
AXB19a/PgnJ m 3543904.0 0.0   1   0.0 0.0 3543904.0, 3543904.0 1.5
AXB19b/PgnJ m 3541764.0 292473.0   2   206810.0 0.0826 3334955.0, 3748574.0 1.5
AXB19/PgnJ m 3947454.0 0.0   1   0.0 0.0 3947454.0, 3947454.0 2.35
AXB1/PgnJ m 4323304.0 0.0   1   0.0 0.0 4323304.0, 4323304.0 3.15
AXB23/PgnJ m 2741546.0 0.0   1   0.0 0.0 2741546.0, 2741546.0 -0.19
AXB24/PgnJ m 2386676.0 95976.0   2   67865.0 0.0402 2318810.0, 2454540.0 -0.94
AXB2/PgnJ m 2394606.0 0.0   1   0.0 0.0 2394606.0, 2394606.0 -0.93
AXB4/PgnJ m 3353461.0 0.0   1   0.0 0.0 3353461.0, 3353461.0 1.1
AXB5/PgnJ m 2333082.0 0.0   1   0.0 0.0 2333082.0, 2333082.0 -1.06
AXB6/PgnJ m 3198449.0 0.0   1   0.0 0.0 3198449.0, 3198449.0 0.77
AXB8/PgnJ m 2854260.0 0.0   1   0.0 0.0 2854260.0, 2854260.0 0.04
BALB/cJ m 2799999.0 403596.0   3 233016.0 0.144 2548632.0, 3265536.0 -0.07
BTBR T+ Itpr3tf/J m 2420598.0 0.0   1   0.0 0.0 2420598.0, 2420598.0 -0.87
BUB/BnJ m 3237234.0 0.0   1   0.0 0.0 3237234.0, 3237234.0 0.85
BXA11/PgnJ m 2640403.0 0.0   1   0.0 0.0 2640403.0, 2640403.0 -0.41
BXA12/PgnJ m 1546753.0 0.0   1   0.0 0.0 1546753.0, 1546753.0 -2.72
BXA13/PgnJ m 2739146.0 0.0   1   0.0 0.0 2739146.0, 2739146.0 -0.2
BXA14/PgnJ m 3494662.0 0.0   1   0.0 0.0 3494662.0, 3494662.0 1.4
BXA16/PgnJ m 2845096.0 176102.0   2   124523.0 0.0619 2720572.0, 2969619.0 0.03
BXA1/PgnJ m 2858749.0 0.0   1   0.0 0.0 2858749.0, 2858749.0 0.05
BXA24/PgnJ m 3253678.0 0.0   1   0.0 0.0 3253678.0, 3253678.0 0.89
BXA25/PgnJ m 2674180.0 0.0   1   0.0 0.0 2674180.0, 2674180.0 -0.34
BXA26/PgnJ m 3241636.0 0.0   1   0.0 0.0 3241636.0, 3241636.0 0.86
BXA2/PgnJ m 3150444.0 0.0   1   0.0 0.0 3150444.0, 3150444.0 0.67
BXA4/PgnJ m 2058729.0 0.0   1   0.0 0.0 2058729.0, 2058729.0 -1.63
BXA7/PgnJ m 3397736.0 0.0   1   0.0 0.0 3397736.0, 3397736.0 1.19
BXA8/PgnJ m 2598400.0 0.0   1   0.0 0.0 2598400.0, 2598400.0 -0.5
BXD11/TyJ m 2215721.0 0.0   1   0.0 0.0 2215721.0, 2215721.0 -1.3
BXD12/TyJ m 2943192.0 0.0   1   0.0 0.0 2943192.0, 2943192.0 0.23
BXD13/TyJ m 2787128.0 0.0   1   0.0 0.0 2787128.0, 2787128.0 -0.1
BXD14/TyJ m 2961988.0 0.0   1   0.0 0.0 2961988.0, 2961988.0 0.27
BXD15/TyJ m 2892420.0 0.0   1   0.0 0.0 2892420.0, 2892420.0 0.13
BXD18/TyJ m 2416548.0 0.0   1   0.0 0.0 2416548.0, 2416548.0 -0.88
BXD19/TyJ m 2572341.0 63741.0   2   45071.0 0.0248 2527270.0, 2617412.0 -0.55
BXD1/TyJ m 2727640.0 0.0   1   0.0 0.0 2727640.0, 2727640.0 -0.22
BXD20/TyJ m 2932664.0 0.0   1   0.0 0.0 2932664.0, 2932664.0 0.21
BXD21/TyJ m 2305934.0 0.0   1   0.0 0.0 2305934.0, 2305934.0 -1.11
BXD22/TyJ m 3207296.0 0.0   1   0.0 0.0 3207296.0, 3207296.0 0.79
BXD24/TyJ m 2857422.0 0.0   1   0.0 0.0 2857422.0, 2857422.0 0.05
BXD24/TyJ-Cep290rd16/J m 2565142.0 0.0   1   0.0 0.0 2565142.0, 2565142.0 -0.57
BXD28/TyJ m 2813416.0 349040.0   2   246809.0 0.124 2566608.0, 3060225.0 -0.04
BXD29-Tlr4lps-2J/J m 2919372.0 0.0   1   0.0 0.0 2919372.0, 2919372.0 0.18
BXD2/TyJ m 3026672.0 0.0   1   0.0 0.0 3026672.0, 3026672.0 0.41
BXD32/TyJ m 3680703.0 0.0   1   0.0 0.0 3680703.0, 3680703.0 1.79
BXD33/TyJ m 3186972.0 0.0   1   0.0 0.0 3186972.0, 3186972.0 0.75
BXD34/TyJ m 2970780.0 0.0   1   0.0 0.0 2970780.0, 2970780.0 0.29
BXD36/TyJ m 2243921.0 0.0   1   0.0 0.0 2243921.0, 2243921.0 -1.24
BXD38/TyJ m 3007374.0 0.0   1   0.0 0.0 3007374.0, 3007374.0 0.37
BXD39/TyJ m 2873446.0 0.0   1   0.0 0.0 2873446.0, 2873446.0 0.09
BXD40/TyJ m 2634836.0 0.0   1   0.0 0.0 2634836.0, 2634836.0 -0.42
BXD42/TyJ m 3094699.0 0.0   1   0.0 0.0 3094699.0, 3094699.0 0.55
BXD5/TyJ m 3049022.0 0.0   1   0.0 0.0 3049022.0, 3049022.0 0.46
BXD6/TyJ m 2733366.0 0.0   1   0.0 0.0 2733366.0, 2733366.0 -0.21
BXD8/TyJ m 2793948.0 0.0   1   0.0 0.0 2793948.0, 2793948.0 -0.08
BXD9/TyJ m 2535374.0 0.0   1   0.0 0.0 2535374.0, 2535374.0 -0.63
BXH10/TyJ m 3117711.0 0.0   1   0.0 0.0 3117711.0, 3117711.0 0.6
BXH19/TyJ m 2474539.0 0.0   1   0.0 0.0 2474539.0, 2474539.0 -0.76
BXH20/KccJ m 2939262.0 0.0   1   0.0 0.0 2939262.0, 2939262.0 0.22
BXH22/KccJ m 2654798.0 0.0   1   0.0 0.0 2654798.0, 2654798.0 -0.38
BXH2/TyJ m 2836659.0 0.0   1   0.0 0.0 2836659.0, 2836659.0 0.01
BXH4/TyJ m 2694217.0 153480.0   2   108526.0 0.057 2585691.0, 2802744.0 -0.29
BXH6/TyJ m 3422060.0 0.0   1   0.0 0.0 3422060.0, 3422060.0 1.24
BXH7/TyJ m 2740007.0 0.0   1   0.0 0.0 2740007.0, 2740007.0 -0.2
BXH8/TyJ m 2851928.0 0.0   1   0.0 0.0 2851928.0, 2851928.0 0.04
BXH9/TyJ m 2614662.0 0.0   1   0.0 0.0 2614662.0, 2614662.0 -0.46
C3H/HeJ m 2674399.0 348960.0   2   246752.0 0.13 2427647.0, 2921151.0 -0.33
C57BL/6J m 3353901.0 79446.0   5 35529.0 0.0237 3248279.0, 3431732.0 1.1
C57L/J m 2068946.0 0.0   1   0.0 0.0 2068946.0, 2068946.0 -1.61
C58/J m 5083681.0 0.0   1   0.0 0.0 5083681.0, 5083681.0 4.75
CAST/EiJ m 2593041.0 0.0   1   0.0 0.0 2593041.0, 2593041.0 -0.51
CBA/J m 2454106.0 0.0   1   0.0 0.0 2454106.0, 2454106.0 -0.8
CE/J m 2864823.0 0.0   1   0.0 0.0 2864823.0, 2864823.0 0.07
CXB11/HiAJ m 2611266.0 60885.0   2   43052.0 0.0233 2568214.0, 2654318.0 -0.47
CXB12/HiAJ m 3221248.0 236670.0   2   167351.0 0.0735 3053897.0, 3388599.0 0.82
CXB13/HiAJ m 3231217.0 300296.0   3 173376.0 0.0929 2983718.0, 3565290.0 0.84
CXB1/ByJ m 2630886.0 185563.0   3 107135.0 0.0705 2483024.0, 2839116.0 -0.43
CXB2/ByJ m 3013387.0 66536.0   3 38415.0 0.0221 2967390.0, 3089679.0 0.38
CXB3/ByJ m 2975987.0 192327.0   2   135995.0 0.0646 2839992.0, 3111983.0 0.3
CXB4/ByJ m 2860781.0 72921.0   2   51563.0 0.0255 2809218.0, 2912343.0 0.06
CXB6/ByJ m 2710665.0 296592.0   3 171238.0 0.109 2408124.0, 3000927.0 -0.26
CXB7/ByJ m 2821780.0 74445.0   2   52641.0 0.0264 2769139.0, 2874421.0 -0.02
CXB8/HiAJ m 3574035.0 282514.0   3 163110.0 0.079 3250386.0, 3771260.0 1.56
CXB9/HiAJ m 2944941.0 134342.0   3 77562.0 0.0456 2805884.0, 3074011.0 0.24
DBA/2J m 2432101.0 45887.0   4 22944.0 0.0189 2369849.0, 2478829.0 -0.85
FVB/NJ m 2193105.0 0.0   1   0.0 0.0 2193105.0, 2193105.0 -1.35
I/LnJ m 2788454.0 0.0   1   0.0 0.0 2788454.0, 2788454.0 -0.09
KK/HlJ m 2651901.0 0.0   1   0.0 0.0 2651901.0, 2651901.0 -0.38
LG/J m 2472841.0 0.0   1   0.0 0.0 2472841.0, 2472841.0 -0.76
LP/J m 2688706.0 0.0   1   0.0 0.0 2688706.0, 2688706.0 -0.3
MA/MyJ m 2157394.0 0.0   1   0.0 0.0 2157394.0, 2157394.0 -1.43
NOD/ShiLtJ m 3159924.0 0.0   1   0.0 0.0 3159924.0, 3159924.0 0.69
NON/ShiLtJ m 2841898.0 0.0   1   0.0 0.0 2841898.0, 2841898.0 0.02
NZW/LacJ m 2606555.0 0.0   1   0.0 0.0 2606555.0, 2606555.0 -0.48
PL/J m 2612914.0 0.0   1   0.0 0.0 2612914.0, 2612914.0 -0.46
RIIIS/J m 2694939.0 0.0   1   0.0 0.0 2694939.0, 2694939.0 -0.29
SEA/GnJ m 2540070.0 0.0   1   0.0 0.0 2540070.0, 2540070.0 -0.62
SJL/J m 1920112.0 0.0   1   0.0 0.0 1920112.0, 1920112.0 -1.93
SM/J m 2472235.0 0.0   1   0.0 0.0 2472235.0, 2472235.0 -0.76
SWR/J m 3082285.0 0.0   1   0.0 0.0 3082285.0, 3082285.0 0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 2522483.9 148152.4922 2823565.9888 2221401.8112
AXB19b/PgnJ m 3541764.3 148152.4922 3842846.3888 3240682.2112
AXB24/PgnJ m 2386675.5 148152.4922 2687757.5888 2085593.4112
BALB/cJ m 2799998.8667 120966.0033 3045831.3627 2554166.3706
BXA16/PgnJ m 2845095.65 148152.4922 3146177.7388 2544013.5612
BXD19/TyJ m 2572341.15 148152.4922 2873423.2388 2271259.0612
BXD28/TyJ m 2813416.4 148152.4922 3114498.4888 2512334.3112
BXH4/TyJ m 2694217.3 148152.4922 2995299.3888 2393135.2112
C3H/HeJ m 2674398.8 148152.4922 2975480.8888 2373316.7112
C57BL/6J m 3353900.82 93699.8633 3544321.8526 3163479.7874
CXB11/HiAJ m 2611266.15 148152.4922 2912348.2388 2310184.0612
CXB12/HiAJ m 3221248.15 148152.4922 3522330.2388 2920166.0612
CXB13/HiAJ m 3231217.2667 120966.0033 3477049.7627 2985384.7706
CXB1/ByJ m 2630886.2 120966.0033 2876718.696 2385053.704
CXB2/ByJ m 3013386.8667 120966.0033 3259219.3627 2767554.3706
CXB3/ByJ m 2975987.4 148152.4922 3277069.4888 2674905.3112
CXB4/ByJ m 2860780.55 148152.4922 3161862.6388 2559698.4612
CXB6/ByJ m 2710665.0 120966.0033 2956497.496 2464832.504
CXB7/ByJ m 2821779.9 148152.4922 3122861.9888 2520697.8112
CXB8/HiAJ m 3574034.7667 120966.0033 3819867.2627 3328202.2706
CXB9/HiAJ m 2944941.2 120966.0033 3190773.696 2699108.704
DBA/2J m 2432100.9 104759.6319 2644998.0867 2219203.7133




  GWAS USING LINEAR MIXED MODELS

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