Project measure / variable:   HMDPpheno6   GO_carnitine

ID, description, units MPD:50142   GO_carnitine   liver glutaroyl carnitine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver glutaroyl carnitine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means772232   None
Median of the strain means483314   None
SD of the strain means± 2464572
Coefficient of variation (CV)3.19
Min–max range of strain means62066   –   25705330   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 2883149072498.98 137292812976.142 8.1223 < 0.0001
Residuals 34 574709452015.919 16903219176.9388


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 708899.0 0.0   1   0.0 0.0 708899.0, 708899.0 -0.03
A/J m 212255.0 29202.0   2   20649.0 0.138 191606.0, 232904.0 -0.23
AKR/J m 582151.0 0.0   1   0.0 0.0 582151.0, 582151.0 -0.08
AXB10/PgnJ m 478534.0 0.0   1   0.0 0.0 478534.0, 478534.0 -0.12
AXB12/PgnJ m 223705.0 0.0   1   0.0 0.0 223705.0, 223705.0 -0.22
AXB13/PgnJ m 528452.0 0.0   1   0.0 0.0 528452.0, 528452.0 -0.1
AXB15/PgnJ m 390733.0 0.0   1   0.0 0.0 390733.0, 390733.0 -0.15
AXB19a/PgnJ m 402344.0 0.0   1   0.0 0.0 402344.0, 402344.0 -0.15
AXB19b/PgnJ m 441705.0 153417.0   2   108482.0 0.347 333222.0, 550187.0 -0.13
AXB19/PgnJ m 415748.0 0.0   1   0.0 0.0 415748.0, 415748.0 -0.14
AXB1/PgnJ m 488093.0 0.0   1   0.0 0.0 488093.0, 488093.0 -0.12
AXB23/PgnJ m 240068.0 0.0   1   0.0 0.0 240068.0, 240068.0 -0.22
AXB24/PgnJ m 359817.0 89063.0   2   62977.0 0.248 296839.0, 422794.0 -0.17
AXB2/PgnJ m 455021.0 0.0   1   0.0 0.0 455021.0, 455021.0 -0.13
AXB4/PgnJ m 413995.0 0.0   1   0.0 0.0 413995.0, 413995.0 -0.15
AXB5/PgnJ m 372998.0 0.0   1   0.0 0.0 372998.0, 372998.0 -0.16
AXB6/PgnJ m 429925.0 0.0   1   0.0 0.0 429925.0, 429925.0 -0.14
AXB8/PgnJ m 926323.0 0.0   1   0.0 0.0 926323.0, 926323.0 0.06
BALB/cJ m 373833.0 55999.0   3 32331.0 0.15 336100.0, 438175.0 -0.16
BTBR T+ Itpr3tf/J m 326884.0 0.0   1   0.0 0.0 326884.0, 326884.0 -0.18
BUB/BnJ m 1748283.0 0.0   1   0.0 0.0 1748283.0, 1748283.0 0.4
BXA11/PgnJ m 294393.0 0.0   1   0.0 0.0 294393.0, 294393.0 -0.19
BXA12/PgnJ m 391602.0 0.0   1   0.0 0.0 391602.0, 391602.0 -0.15
BXA13/PgnJ m 703550.0 0.0   1   0.0 0.0 703550.0, 703550.0 -0.03
BXA14/PgnJ m 1447071.0 0.0   1   0.0 0.0 1447071.0, 1447071.0 0.27
BXA16/PgnJ m 304597.0 73206.0   2   51764.0 0.24 252832.0, 356361.0 -0.19
BXA1/PgnJ m 512022.0 0.0   1   0.0 0.0 512022.0, 512022.0 -0.11
BXA24/PgnJ m 367095.0 0.0   1   0.0 0.0 367095.0, 367095.0 -0.16
BXA25/PgnJ m 812820.0 0.0   1   0.0 0.0 812820.0, 812820.0 0.02
BXA26/PgnJ m 626131.0 0.0   1   0.0 0.0 626131.0, 626131.0 -0.06
BXA2/PgnJ m 702027.0 0.0   1   0.0 0.0 702027.0, 702027.0 -0.03
BXA4/PgnJ m 536702.0 0.0   1   0.0 0.0 536702.0, 536702.0 -0.1
BXA7/PgnJ m 348663.0 0.0   1   0.0 0.0 348663.0, 348663.0 -0.17
BXA8/PgnJ m 353836.0 0.0   1   0.0 0.0 353836.0, 353836.0 -0.17
BXD11/TyJ m 620982.0 0.0   1   0.0 0.0 620982.0, 620982.0 -0.06
BXD12/TyJ m 229672.0 0.0   1   0.0 0.0 229672.0, 229672.0 -0.22
BXD13/TyJ m 260991.0 0.0   1   0.0 0.0 260991.0, 260991.0 -0.21
BXD14/TyJ m 489431.0 0.0   1   0.0 0.0 489431.0, 489431.0 -0.11
BXD15/TyJ m 220960.0 0.0   1   0.0 0.0 220960.0, 220960.0 -0.22
BXD18/TyJ m 747201.0 0.0   1   0.0 0.0 747201.0, 747201.0 -0.01
BXD19/TyJ m 433371.0 187201.0   2   132371.0 0.432 301000.0, 565743.0 -0.14
BXD1/TyJ m 381252.0 0.0   1   0.0 0.0 381252.0, 381252.0 -0.16
BXD20/TyJ m 403346.0 0.0   1   0.0 0.0 403346.0, 403346.0 -0.15
BXD21/TyJ m 321488.0 0.0   1   0.0 0.0 321488.0, 321488.0 -0.18
BXD22/TyJ m 339764.0 0.0   1   0.0 0.0 339764.0, 339764.0 -0.18
BXD24/TyJ m 308518.0 0.0   1   0.0 0.0 308518.0, 308518.0 -0.19
BXD24/TyJ-Cep290rd16/J m 325055.0 0.0   1   0.0 0.0 325055.0, 325055.0 -0.18
BXD28/TyJ m 908841.0 49684.0   2   35132.0 0.0547 873709.0, 943973.0 0.06
BXD29-Tlr4lps-2J/J m 422576.0 0.0   1   0.0 0.0 422576.0, 422576.0 -0.14
BXD2/TyJ m 213312.0 0.0   1   0.0 0.0 213312.0, 213312.0 -0.23
BXD32/TyJ m 708809.0 0.0   1   0.0 0.0 708809.0, 708809.0 -0.03
BXD33/TyJ m 573836.0 0.0   1   0.0 0.0 573836.0, 573836.0 -0.08
BXD34/TyJ m 25705330.0 0.0   1   0.0 0.0 25705330.0, 25705330.0 10.12
BXD36/TyJ m 433734.0 0.0   1   0.0 0.0 433734.0, 433734.0 -0.14
BXD38/TyJ m 722716.0 0.0   1   0.0 0.0 722716.0, 722716.0 -0.02
BXD39/TyJ m 681641.0 0.0   1   0.0 0.0 681641.0, 681641.0 -0.04
BXD40/TyJ m 881823.0 0.0   1   0.0 0.0 881823.0, 881823.0 0.04
BXD42/TyJ m 319729.0 0.0   1   0.0 0.0 319729.0, 319729.0 -0.18
BXD5/TyJ m 555944.0 0.0   1   0.0 0.0 555944.0, 555944.0 -0.09
BXD6/TyJ m 417011.0 0.0   1   0.0 0.0 417011.0, 417011.0 -0.14
BXD8/TyJ m 246298.0 0.0   1   0.0 0.0 246298.0, 246298.0 -0.21
BXD9/TyJ m 262194.0 0.0   1   0.0 0.0 262194.0, 262194.0 -0.21
BXH10/TyJ m 510703.0 0.0   1   0.0 0.0 510703.0, 510703.0 -0.11
BXH19/TyJ m 510721.0 0.0   1   0.0 0.0 510721.0, 510721.0 -0.11
BXH20/KccJ m 912832.0 0.0   1   0.0 0.0 912832.0, 912832.0 0.06
BXH22/KccJ m 511606.0 0.0   1   0.0 0.0 511606.0, 511606.0 -0.11
BXH2/TyJ m 668723.0 0.0   1   0.0 0.0 668723.0, 668723.0 -0.04
BXH4/TyJ m 299466.0 63170.0   2   44668.0 0.211 254798.0, 344134.0 -0.19
BXH6/TyJ m 597446.0 0.0   1   0.0 0.0 597446.0, 597446.0 -0.07
BXH7/TyJ m 601663.0 0.0   1   0.0 0.0 601663.0, 601663.0 -0.07
BXH8/TyJ m 315523.0 0.0   1   0.0 0.0 315523.0, 315523.0 -0.19
BXH9/TyJ m 627882.0 0.0   1   0.0 0.0 627882.0, 627882.0 -0.06
C3H/HeJ m 569165.0 51296.0   2   36272.0 0.0901 532893.0, 605436.0 -0.08
C57BL/6J m 627813.0 82589.0   5 36935.0 0.132 531915.0, 710788.0 -0.06
C57L/J m 609905.0 0.0   1   0.0 0.0 609905.0, 609905.0 -0.07
C58/J m 1875832.0 0.0   1   0.0 0.0 1875832.0, 1875832.0 0.45
CAST/EiJ m 229092.0 0.0   1   0.0 0.0 229092.0, 229092.0 -0.22
CBA/J m 563438.0 0.0   1   0.0 0.0 563438.0, 563438.0 -0.08
CE/J m 190514.0 0.0   1   0.0 0.0 190514.0, 190514.0 -0.24
CXB11/HiAJ m 661806.0 189929.0   2   134300.0 0.287 527506.0, 796106.0 -0.04
CXB12/HiAJ m 341966.0 32560.0   2   23024.0 0.0952 318942.0, 364990.0 -0.17
CXB13/HiAJ m 279371.0 65605.0   3 37877.0 0.235 241464.0, 355125.0 -0.2
CXB1/ByJ m 651177.0 158087.0   3 91271.0 0.243 507977.0, 820816.0 -0.05
CXB2/ByJ m 903798.0 339284.0   3 195886.0 0.375 566838.0, 1245358.0 0.05
CXB3/ByJ m 668412.0 69537.0   2   49170.0 0.104 619242.0, 717582.0 -0.04
CXB4/ByJ m 174676.0 50496.0   2   35706.0 0.289 138970.0, 210382.0 -0.24
CXB6/ByJ m 360926.0 32626.0   3 18836.0 0.0904 338780.0, 398392.0 -0.17
CXB7/ByJ m 719656.0 24856.0   2   17576.0 0.0345 702080.0, 737232.0 -0.02
CXB8/HiAJ m 183443.0 20954.0   3 12098.0 0.114 170910.0, 207633.0 -0.24
CXB9/HiAJ m 821725.0 234557.0   3 135422.0 0.285 672086.0, 1092052.0 0.02
DBA/2J m 273427.0 64145.0   4 32073.0 0.235 219853.0, 364442.0 -0.2
FVB/NJ m 714356.0 0.0   1   0.0 0.0 714356.0, 714356.0 -0.02
I/LnJ m 608122.0 0.0   1   0.0 0.0 608122.0, 608122.0 -0.07
KK/HlJ m 62066.0 0.0   1   0.0 0.0 62066.0, 62066.0 -0.29
LG/J m 609967.0 0.0   1   0.0 0.0 609967.0, 609967.0 -0.07
LP/J m 265998.0 0.0   1   0.0 0.0 265998.0, 265998.0 -0.21
MA/MyJ m 1009630.0 0.0   1   0.0 0.0 1009630.0, 1009630.0 0.1
NOD/ShiLtJ m 388177.0 0.0   1   0.0 0.0 388177.0, 388177.0 -0.16
NON/ShiLtJ m 625250.0 0.0   1   0.0 0.0 625250.0, 625250.0 -0.06
NZW/LacJ m 1040266.0 0.0   1   0.0 0.0 1040266.0, 1040266.0 0.11
PL/J m 120798.0 0.0   1   0.0 0.0 120798.0, 120798.0 -0.26
RIIIS/J m 851210.0 0.0   1   0.0 0.0 851210.0, 851210.0 0.03
SEA/GnJ m 259094.0 0.0   1   0.0 0.0 259094.0, 259094.0 -0.21
SJL/J m 541552.0 0.0   1   0.0 0.0 541552.0, 541552.0 -0.09
SM/J m 1658742.0 0.0   1   0.0 0.0 1658742.0, 1658742.0 0.36
SWR/J m 782583.0 0.0   1   0.0 0.0 782583.0, 782583.0 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 212255.3 91932.6361 399084.895 25425.705
AXB19b/PgnJ m 441704.55 91932.6361 628534.145 254874.955
AXB24/PgnJ m 359816.55 91932.6361 546646.145 172986.955
BALB/cJ m 373832.6 75062.6831 526378.3256 221286.8744
BXA16/PgnJ m 304596.8 91932.6361 491426.395 117767.205
BXD19/TyJ m 433371.3 91932.6361 620200.895 246541.705
BXD28/TyJ m 908841.35 91932.6361 1095670.945 722011.755
BXH4/TyJ m 299466.0 91932.6361 486295.595 112636.405
C3H/HeJ m 569164.55 91932.6361 755994.145 382334.955
C57BL/6J m 627812.92 58143.3043 745974.3309 509651.5091
CXB11/HiAJ m 661805.55 91932.6361 848635.145 474975.955
CXB12/HiAJ m 341966.1 91932.6361 528795.695 155136.505
CXB13/HiAJ m 279370.9 75062.6831 431916.6256 126825.1744
CXB1/ByJ m 651176.9 75062.6831 803722.6256 498631.1744
CXB2/ByJ m 903797.7 75062.6831 1056343.4256 751251.9744
CXB3/ByJ m 668412.05 91932.6361 855241.645 481582.455
CXB4/ByJ m 174676.1 91932.6361 361505.695 0.0
CXB6/ByJ m 360925.6 75062.6831 513471.3256 208379.8744
CXB7/ByJ m 719656.15 91932.6361 906485.745 532826.555
CXB8/HiAJ m 183443.2667 75062.6831 335988.9922 30897.5411
CXB9/HiAJ m 821725.0 75062.6831 974270.7256 669179.2744
DBA/2J m 273426.95 65006.1904 405535.4236 141318.4764




  GWAS USING LINEAR MIXED MODELS