Project measure / variable:   HMDPpheno6   His

ID, description, units MPD:50138   His   liver histidine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver histidine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means332422   None
Median of the strain means327408   None
SD of the strain means± 73395
Coefficient of variation (CV)0.221
Min–max range of strain means178768   –   481265   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 234093064210.776 11147288771.9417 3.6876 0.0004
Residuals 34 102779805761.073 3022935463.561


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 387751.0 0.0   1   0.0 0.0 387751.0, 387751.0 0.75
A/J m 315658.0 1286.0   2   909.0 0.00407 314749.0, 316568.0 -0.23
AKR/J m 306291.0 0.0   1   0.0 0.0 306291.0, 306291.0 -0.36
AXB10/PgnJ m 359607.0 0.0   1   0.0 0.0 359607.0, 359607.0 0.37
AXB12/PgnJ m 305824.0 0.0   1   0.0 0.0 305824.0, 305824.0 -0.36
AXB13/PgnJ m 357877.0 0.0   1   0.0 0.0 357877.0, 357877.0 0.35
AXB15/PgnJ m 361355.0 0.0   1   0.0 0.0 361355.0, 361355.0 0.39
AXB19a/PgnJ m 343467.0 0.0   1   0.0 0.0 343467.0, 343467.0 0.15
AXB19b/PgnJ m 452422.0 54971.0   2   38870.0 0.122 413552.0, 491292.0 1.63
AXB19/PgnJ m 315499.0 0.0   1   0.0 0.0 315499.0, 315499.0 -0.23
AXB1/PgnJ m 453977.0 0.0   1   0.0 0.0 453977.0, 453977.0 1.66
AXB23/PgnJ m 318738.0 0.0   1   0.0 0.0 318738.0, 318738.0 -0.19
AXB24/PgnJ m 210405.0 114074.0   2   80662.0 0.542 129743.0, 291067.0 -1.66
AXB2/PgnJ m 346761.0 0.0   1   0.0 0.0 346761.0, 346761.0 0.2
AXB4/PgnJ m 416908.0 0.0   1   0.0 0.0 416908.0, 416908.0 1.15
AXB5/PgnJ m 215224.0 0.0   1   0.0 0.0 215224.0, 215224.0 -1.6
AXB6/PgnJ m 372973.0 0.0   1   0.0 0.0 372973.0, 372973.0 0.55
AXB8/PgnJ m 351877.0 0.0   1   0.0 0.0 351877.0, 351877.0 0.27
BALB/cJ m 371771.0 49313.0   3 28471.0 0.133 331386.0, 426728.0 0.54
BTBR T+ Itpr3tf/J m 236553.0 0.0   1   0.0 0.0 236553.0, 236553.0 -1.31
BUB/BnJ m 455168.0 0.0   1   0.0 0.0 455168.0, 455168.0 1.67
BXA11/PgnJ m 313314.0 0.0   1   0.0 0.0 313314.0, 313314.0 -0.26
BXA12/PgnJ m 253503.0 0.0   1   0.0 0.0 253503.0, 253503.0 -1.08
BXA13/PgnJ m 440114.0 0.0   1   0.0 0.0 440114.0, 440114.0 1.47
BXA14/PgnJ m 215532.0 0.0   1   0.0 0.0 215532.0, 215532.0 -1.59
BXA16/PgnJ m 289375.0 57166.0   2   40423.0 0.198 248952.0, 329798.0 -0.59
BXA1/PgnJ m 281712.0 0.0   1   0.0 0.0 281712.0, 281712.0 -0.69
BXA24/PgnJ m 370745.0 0.0   1   0.0 0.0 370745.0, 370745.0 0.52
BXA25/PgnJ m 282446.0 0.0   1   0.0 0.0 282446.0, 282446.0 -0.68
BXA26/PgnJ m 378018.0 0.0   1   0.0 0.0 378018.0, 378018.0 0.62
BXA2/PgnJ m 201218.0 0.0   1   0.0 0.0 201218.0, 201218.0 -1.79
BXA4/PgnJ m 305109.0 0.0   1   0.0 0.0 305109.0, 305109.0 -0.37
BXA7/PgnJ m 326475.0 0.0   1   0.0 0.0 326475.0, 326475.0 -0.08
BXA8/PgnJ m 280736.0 0.0   1   0.0 0.0 280736.0, 280736.0 -0.7
BXD11/TyJ m 334058.0 0.0   1   0.0 0.0 334058.0, 334058.0 0.02
BXD12/TyJ m 463870.0 0.0   1   0.0 0.0 463870.0, 463870.0 1.79
BXD13/TyJ m 254262.0 0.0   1   0.0 0.0 254262.0, 254262.0 -1.06
BXD14/TyJ m 328342.0 0.0   1   0.0 0.0 328342.0, 328342.0 -0.06
BXD15/TyJ m 379262.0 0.0   1   0.0 0.0 379262.0, 379262.0 0.64
BXD18/TyJ m 284101.0 0.0   1   0.0 0.0 284101.0, 284101.0 -0.66
BXD19/TyJ m 303248.0 54852.0   2   38786.0 0.181 264462.0, 342034.0 -0.4
BXD1/TyJ m 254280.0 0.0   1   0.0 0.0 254280.0, 254280.0 -1.06
BXD20/TyJ m 200432.0 0.0   1   0.0 0.0 200432.0, 200432.0 -1.8
BXD21/TyJ m 250332.0 0.0   1   0.0 0.0 250332.0, 250332.0 -1.12
BXD22/TyJ m 282732.0 0.0   1   0.0 0.0 282732.0, 282732.0 -0.68
BXD24/TyJ m 325601.0 0.0   1   0.0 0.0 325601.0, 325601.0 -0.09
BXD24/TyJ-Cep290rd16/J m 307850.0 0.0   1   0.0 0.0 307850.0, 307850.0 -0.33
BXD28/TyJ m 279890.0 90093.0   2   63706.0 0.322 216184.0, 343595.0 -0.72
BXD29-Tlr4lps-2J/J m 421004.0 0.0   1   0.0 0.0 421004.0, 421004.0 1.21
BXD2/TyJ m 379164.0 0.0   1   0.0 0.0 379164.0, 379164.0 0.64
BXD32/TyJ m 414860.0 0.0   1   0.0 0.0 414860.0, 414860.0 1.12
BXD33/TyJ m 468553.0 0.0   1   0.0 0.0 468553.0, 468553.0 1.85
BXD34/TyJ m 396645.0 0.0   1   0.0 0.0 396645.0, 396645.0 0.88
BXD36/TyJ m 306597.0 0.0   1   0.0 0.0 306597.0, 306597.0 -0.35
BXD38/TyJ m 265825.0 0.0   1   0.0 0.0 265825.0, 265825.0 -0.91
BXD39/TyJ m 213596.0 0.0   1   0.0 0.0 213596.0, 213596.0 -1.62
BXD40/TyJ m 364896.0 0.0   1   0.0 0.0 364896.0, 364896.0 0.44
BXD42/TyJ m 234239.0 0.0   1   0.0 0.0 234239.0, 234239.0 -1.34
BXD5/TyJ m 292152.0 0.0   1   0.0 0.0 292152.0, 292152.0 -0.55
BXD6/TyJ m 221629.0 0.0   1   0.0 0.0 221629.0, 221629.0 -1.51
BXD8/TyJ m 300007.0 0.0   1   0.0 0.0 300007.0, 300007.0 -0.44
BXD9/TyJ m 271212.0 0.0   1   0.0 0.0 271212.0, 271212.0 -0.83
BXH10/TyJ m 459072.0 0.0   1   0.0 0.0 459072.0, 459072.0 1.73
BXH19/TyJ m 242381.0 0.0   1   0.0 0.0 242381.0, 242381.0 -1.23
BXH20/KccJ m 320056.0 0.0   1   0.0 0.0 320056.0, 320056.0 -0.17
BXH22/KccJ m 468620.0 0.0   1   0.0 0.0 468620.0, 468620.0 1.86
BXH2/TyJ m 274042.0 0.0   1   0.0 0.0 274042.0, 274042.0 -0.8
BXH4/TyJ m 178768.0 358.0   2   253.0 0.002 178515.0, 179021.0 -2.09
BXH6/TyJ m 235369.0 0.0   1   0.0 0.0 235369.0, 235369.0 -1.32
BXH7/TyJ m 299726.0 0.0   1   0.0 0.0 299726.0, 299726.0 -0.45
BXH8/TyJ m 193046.0 0.0   1   0.0 0.0 193046.0, 193046.0 -1.9
BXH9/TyJ m 359421.0 0.0   1   0.0 0.0 359421.0, 359421.0 0.37
C3H/HeJ m 408495.0 75137.0   2   53130.0 0.184 355364.0, 461625.0 1.04
C57BL/6J m 418202.0 28213.0   5 12617.0 0.0675 384249.0, 461457.0 1.17
C57L/J m 262728.0 0.0   1   0.0 0.0 262728.0, 262728.0 -0.95
C58/J m 456650.0 0.0   1   0.0 0.0 456650.0, 456650.0 1.69
CAST/EiJ m 378496.0 0.0   1   0.0 0.0 378496.0, 378496.0 0.63
CBA/J m 352358.0 0.0   1   0.0 0.0 352358.0, 352358.0 0.27
CE/J m 433897.0 0.0   1   0.0 0.0 433897.0, 433897.0 1.38
CXB11/HiAJ m 366073.0 69545.0   2   49176.0 0.19 316897.0, 415248.0 0.46
CXB12/HiAJ m 405295.0 30111.0   2   21292.0 0.0743 384003.0, 426586.0 0.99
CXB13/HiAJ m 400691.0 98053.0   3 56611.0 0.245 310462.0, 505037.0 0.93
CXB1/ByJ m 347827.0 81831.0   3 47245.0 0.235 297087.0, 442229.0 0.21
CXB2/ByJ m 370834.0 57217.0   3 33034.0 0.154 312164.0, 426479.0 0.52
CXB3/ByJ m 301048.0 27707.0   2   19592.0 0.092 281456.0, 320640.0 -0.43
CXB4/ByJ m 232654.0 10290.0   2   7276.0 0.0442 225378.0, 239930.0 -1.36
CXB6/ByJ m 361520.0 57531.0   3 33216.0 0.159 319214.0, 427029.0 0.4
CXB7/ByJ m 322234.0 32701.0   2   23123.0 0.101 299111.0, 345357.0 -0.14
CXB8/HiAJ m 387675.0 40879.0   3 23601.0 0.105 340680.0, 415000.0 0.75
CXB9/HiAJ m 385932.0 25105.0   3 14494.0 0.065 357704.0, 405759.0 0.73
DBA/2J m 323806.0 13899.0   4 6950.0 0.0429 309742.0, 337774.0 -0.12
FVB/NJ m 300870.0 0.0   1   0.0 0.0 300870.0, 300870.0 -0.43
I/LnJ m 481265.0 0.0   1   0.0 0.0 481265.0, 481265.0 2.03
KK/HlJ m 390472.0 0.0   1   0.0 0.0 390472.0, 390472.0 0.79
LG/J m 356631.0 0.0   1   0.0 0.0 356631.0, 356631.0 0.33
LP/J m 325252.0 0.0   1   0.0 0.0 325252.0, 325252.0 -0.1
MA/MyJ m 346580.0 0.0   1   0.0 0.0 346580.0, 346580.0 0.19
NOD/ShiLtJ m 368867.0 0.0   1   0.0 0.0 368867.0, 368867.0 0.5
NON/ShiLtJ m 359129.0 0.0   1   0.0 0.0 359129.0, 359129.0 0.36
NZW/LacJ m 234960.0 0.0   1   0.0 0.0 234960.0, 234960.0 -1.33
PL/J m 397002.0 0.0   1   0.0 0.0 397002.0, 397002.0 0.88
RIIIS/J m 312060.0 0.0   1   0.0 0.0 312060.0, 312060.0 -0.28
SEA/GnJ m 397582.0 0.0   1   0.0 0.0 397582.0, 397582.0 0.89
SJL/J m 216586.0 0.0   1   0.0 0.0 216586.0, 216586.0 -1.58
SM/J m 403297.0 0.0   1   0.0 0.0 403297.0, 403297.0 0.97
SWR/J m 406206.0 0.0   1   0.0 0.0 406206.0, 406206.0 1.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 315658.15 38877.5994 394666.9378 236649.3622
AXB19b/PgnJ m 452421.65 38877.5994 531430.4378 373412.8622
AXB24/PgnJ m 210404.75 38877.5994 289413.5378 131395.9622
BALB/cJ m 371771.3 31743.4269 436281.7051 307260.8949
BXA16/PgnJ m 289375.0 38877.5994 368383.7878 210366.2122
BXD19/TyJ m 303247.95 38877.5994 382256.7378 224239.1622
BXD28/TyJ m 279889.75 38877.5994 358898.5378 200880.9622
BXH4/TyJ m 178767.85 38877.5994 257776.6378 99759.0622
C3H/HeJ m 408494.65 38877.5994 487503.4378 329485.8622
C57BL/6J m 418201.8 24588.3528 468171.3449 368232.2551
CXB11/HiAJ m 366072.65 38877.5994 445081.4378 287063.8622
CXB12/HiAJ m 405294.6 38877.5994 484303.3878 326285.8122
CXB13/HiAJ m 400691.1333 31743.4269 465201.5385 336180.7282
CXB1/ByJ m 347827.1333 31743.4269 412337.5385 283316.7282
CXB2/ByJ m 370833.8667 31743.4269 435344.2718 306323.4615
CXB3/ByJ m 301047.6 38877.5994 380056.3878 222038.8122
CXB4/ByJ m 232654.05 38877.5994 311662.8378 153645.2622
CXB6/ByJ m 361520.3667 31743.4269 426030.7718 297009.9615
CXB7/ByJ m 322233.65 38877.5994 401242.4378 243224.8622
CXB8/HiAJ m 387675.2333 31743.4269 452185.6385 323164.8282
CXB9/HiAJ m 385932.5 31743.4269 450442.9051 321422.0949
DBA/2J m 323805.85 27490.6141 379673.4996 267938.2004




  GWAS USING LINEAR MIXED MODELS