Project measure / variable:   HMDPpheno6   MeC_Gly

ID, description, units MPD:50135   MeC_Gly   liver 3-methylcrotonylglycine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   98 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver 3-methylcrotonylglycine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested98 strains
Mean of the strain means43647   None
Median of the strain means40126   None
SD of the strain means± 20225
Coefficient of variation (CV)0.463
Min–max range of strain means12638   –   116103   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 17 6520626727.047 383566278.0616 2.1321 0.0382
Residuals 27 4857224576.373 179897206.5323


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 30440.0 0.0   1   0.0 0.0 30440.0, 30440.0 -0.65
A/J m 25517.0 9548.0   2   6751.0 0.374 18765.0, 32268.0 -0.9
AKR/J m 28174.0 0.0   1   0.0 0.0 28174.0, 28174.0 -0.77
AXB10/PgnJ m 37368.0 0.0   1   0.0 0.0 37368.0, 37368.0 -0.31
AXB12/PgnJ m 40440.0 0.0   1   0.0 0.0 40440.0, 40440.0 -0.16
AXB15/PgnJ m 65705.0 0.0   1   0.0 0.0 65705.0, 65705.0 1.09
AXB19a/PgnJ m 52632.0 0.0   1   0.0 0.0 52632.0, 52632.0 0.44
AXB19b/PgnJ m 35156.0 888.0   2   628.0 0.0253 34528.0, 35784.0 -0.42
AXB19/PgnJ m 48231.0 0.0   1   0.0 0.0 48231.0, 48231.0 0.23
AXB1/PgnJ m 68059.0 0.0   1   0.0 0.0 68059.0, 68059.0 1.21
AXB23/PgnJ m 37198.0 0.0   1   0.0 0.0 37198.0, 37198.0 -0.32
AXB24/PgnJ m 38048.0 0.0   1   0.0 0.0 38048.0, 38048.0 -0.28
AXB2/PgnJ m 38946.0 0.0   1   0.0 0.0 38946.0, 38946.0 -0.23
AXB4/PgnJ m 57705.0 0.0   1   0.0 0.0 57705.0, 57705.0 0.7
AXB5/PgnJ m 23757.0 0.0   1   0.0 0.0 23757.0, 23757.0 -0.98
AXB6/PgnJ m 53287.0 0.0   1   0.0 0.0 53287.0, 53287.0 0.48
BALB/cJ m 56036.0 16591.0   2   11732.0 0.296 44304.0, 67768.0 0.61
BTBR T+ Itpr3tf/J m 58926.0 0.0   1   0.0 0.0 58926.0, 58926.0 0.76
BUB/BnJ m 54903.0 0.0   1   0.0 0.0 54903.0, 54903.0 0.56
BXA11/PgnJ m 34512.0 0.0   1   0.0 0.0 34512.0, 34512.0 -0.45
BXA12/PgnJ m 23317.0 0.0   1   0.0 0.0 23317.0, 23317.0 -1.01
BXA13/PgnJ m 36711.0 0.0   1   0.0 0.0 36711.0, 36711.0 -0.34
BXA14/PgnJ m 34563.0 0.0   1   0.0 0.0 34563.0, 34563.0 -0.45
BXA16/PgnJ m 29198.0 11261.0   2   7963.0 0.386 21235.0, 37161.0 -0.71
BXA24/PgnJ m 29956.0 0.0   1   0.0 0.0 29956.0, 29956.0 -0.68
BXA25/PgnJ m 14604.0 0.0   1   0.0 0.0 14604.0, 14604.0 -1.44
BXA26/PgnJ m 20819.0 0.0   1   0.0 0.0 20819.0, 20819.0 -1.13
BXA2/PgnJ m 14009.0 0.0   1   0.0 0.0 14009.0, 14009.0 -1.47
BXA4/PgnJ m 28959.0 0.0   1   0.0 0.0 28959.0, 28959.0 -0.73
BXA8/PgnJ m 22398.0 0.0   1   0.0 0.0 22398.0, 22398.0 -1.05
BXD11/TyJ m 49366.0 0.0   1   0.0 0.0 49366.0, 49366.0 0.28
BXD12/TyJ m 65288.0 0.0   1   0.0 0.0 65288.0, 65288.0 1.07
BXD13/TyJ m 25817.0 0.0   1   0.0 0.0 25817.0, 25817.0 -0.88
BXD14/TyJ m 73930.0 0.0   1   0.0 0.0 73930.0, 73930.0 1.5
BXD15/TyJ m 55980.0 0.0   1   0.0 0.0 55980.0, 55980.0 0.61
BXD18/TyJ m 20205.0 0.0   1   0.0 0.0 20205.0, 20205.0 -1.16
BXD19/TyJ m 46632.0 2482.0   2   1755.0 0.0532 44877.0, 48387.0 0.15
BXD1/TyJ m 41128.0 0.0   1   0.0 0.0 41128.0, 41128.0 -0.12
BXD20/TyJ m 46925.0 0.0   1   0.0 0.0 46925.0, 46925.0 0.16
BXD21/TyJ m 41180.0 0.0   1   0.0 0.0 41180.0, 41180.0 -0.12
BXD22/TyJ m 46326.0 0.0   1   0.0 0.0 46326.0, 46326.0 0.13
BXD24/TyJ m 39811.0 0.0   1   0.0 0.0 39811.0, 39811.0 -0.19
BXD24/TyJ-Cep290rd16/J m 61229.0 0.0   1   0.0 0.0 61229.0, 61229.0 0.87
BXD28/TyJ m 29783.0 5555.0   2   3928.0 0.187 25855.0, 33711.0 -0.69
BXD29-Tlr4lps-2J/J m 51829.0 0.0   1   0.0 0.0 51829.0, 51829.0 0.4
BXD2/TyJ m 23492.0 0.0   1   0.0 0.0 23492.0, 23492.0 -1.0
BXD32/TyJ m 42118.0 0.0   1   0.0 0.0 42118.0, 42118.0 -0.08
BXD33/TyJ m 49003.0 0.0   1   0.0 0.0 49003.0, 49003.0 0.26
BXD34/TyJ m 42559.0 0.0   1   0.0 0.0 42559.0, 42559.0 -0.05
BXD36/TyJ m 76866.0 0.0   1   0.0 0.0 76866.0, 76866.0 1.64
BXD38/TyJ m 37945.0 0.0   1   0.0 0.0 37945.0, 37945.0 -0.28
BXD40/TyJ m 92456.0 0.0   1   0.0 0.0 92456.0, 92456.0 2.41
BXD42/TyJ m 56677.0 0.0   1   0.0 0.0 56677.0, 56677.0 0.64
BXD5/TyJ m 32439.0 0.0   1   0.0 0.0 32439.0, 32439.0 -0.55
BXD6/TyJ m 41108.0 0.0   1   0.0 0.0 41108.0, 41108.0 -0.13
BXD8/TyJ m 24699.0 0.0   1   0.0 0.0 24699.0, 24699.0 -0.94
BXD9/TyJ m 41643.0 0.0   1   0.0 0.0 41643.0, 41643.0 -0.1
BXH10/TyJ m 45255.0 0.0   1   0.0 0.0 45255.0, 45255.0 0.08
BXH19/TyJ m 32574.0 0.0   1   0.0 0.0 32574.0, 32574.0 -0.55
BXH20/KccJ m 43538.0 0.0   1   0.0 0.0 43538.0, 43538.0 -0.01
BXH22/KccJ m 45087.0 0.0   1   0.0 0.0 45087.0, 45087.0 0.07
BXH2/TyJ m 29548.0 0.0   1   0.0 0.0 29548.0, 29548.0 -0.7
BXH4/TyJ m 28378.0 5117.0   2   3618.0 0.18 24760.0, 31997.0 -0.75
BXH6/TyJ m 59252.0 0.0   1   0.0 0.0 59252.0, 59252.0 0.77
BXH7/TyJ m 80040.0 0.0   1   0.0 0.0 80040.0, 80040.0 1.8
BXH9/TyJ m 67689.0 0.0   1   0.0 0.0 67689.0, 67689.0 1.19
C3H/HeJ m 79215.0 32522.0   2   22997.0 0.411 56218.0, 102211.0 1.76
C57BL/6J m 33396.0 5224.0   5 2336.0 0.156 27109.0, 41163.0 -0.51
C57L/J m 19151.0 0.0   1   0.0 0.0 19151.0, 19151.0 -1.21
C58/J m 116103.0 0.0   1   0.0 0.0 116103.0, 116103.0 3.58
CBA/J m 47137.0 0.0   1   0.0 0.0 47137.0, 47137.0 0.17
CE/J m 19377.0 0.0   1   0.0 0.0 19377.0, 19377.0 -1.2
CXB11/HiAJ m 36666.0 33615.0   2   23769.0 0.917 12896.0, 60435.0 -0.35
CXB12/HiAJ m 22226.0 3103.0   2   2194.0 0.14 20032.0, 24420.0 -1.06
CXB13/HiAJ m 35592.0 16759.0   3 9676.0 0.471 17528.0, 50634.0 -0.4
CXB1/ByJ m 28399.0 9363.0   2   6621.0 0.33 21779.0, 35020.0 -0.75
CXB2/ByJ m 36670.0 15935.0   3 9200.0 0.435 19592.0, 51140.0 -0.34
CXB3/ByJ m 29856.0 0.0   1   0.0 0.0 29856.0, 29856.0 -0.68
CXB6/ByJ m 32428.0 5651.0   3 3263.0 0.174 28893.0, 38946.0 -0.55
CXB7/ByJ m 22425.0 2220.0   2   1570.0 0.099 20855.0, 23995.0 -1.05
CXB8/HiAJ m 29284.0 10302.0   3 5948.0 0.352 18517.0, 39048.0 -0.71
CXB9/HiAJ m 18133.0 0.0   1   0.0 0.0 18133.0, 18133.0 -1.26
DBA/2J m 42627.0 13605.0   4 6802.0 0.319 23416.0, 53940.0 -0.05
FVB/NJ m 28283.0 0.0   1   0.0 0.0 28283.0, 28283.0 -0.76
I/LnJ m 56423.0 0.0   1   0.0 0.0 56423.0, 56423.0 0.63
KK/HlJ m 12638.0 0.0   1   0.0 0.0 12638.0, 12638.0 -1.53
LG/J m 106531.0 0.0   1   0.0 0.0 106531.0, 106531.0 3.11
LP/J m 41766.0 0.0   1   0.0 0.0 41766.0, 41766.0 -0.09
MA/MyJ m 38946.0 0.0   1   0.0 0.0 38946.0, 38946.0 -0.23
NOD/ShiLtJ m 42954.0 0.0   1   0.0 0.0 42954.0, 42954.0 -0.03
NON/ShiLtJ m 67306.0 0.0   1   0.0 0.0 67306.0, 67306.0 1.17
NZW/LacJ m 66059.0 0.0   1   0.0 0.0 66059.0, 66059.0 1.11
PL/J m 51940.0 0.0   1   0.0 0.0 51940.0, 51940.0 0.41
RIIIS/J m 24488.0 0.0   1   0.0 0.0 24488.0, 24488.0 -0.95
SEA/GnJ m 65706.0 0.0   1   0.0 0.0 65706.0, 65706.0 1.09
SJL/J m 53537.0 0.0   1   0.0 0.0 53537.0, 53537.0 0.49
SM/J m 108701.0 0.0   1   0.0 0.0 108701.0, 108701.0 3.22
SWR/J m 36084.0 0.0   1   0.0 0.0 36084.0, 36084.0 -0.37


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 25516.55 9484.1237 44976.3645 6056.7355
AXB19b/PgnJ m 35155.8 9484.1237 54615.6145 15695.9855
BALB/cJ m 56036.05 9484.1237 75495.8645 36576.2355
BXA16/PgnJ m 29198.35 9484.1237 48658.1645 9738.5355
BXD19/TyJ m 46632.05 9484.1237 66091.8645 27172.2355
BXD28/TyJ m 29783.05 9484.1237 49242.8645 10323.2355
BXH4/TyJ m 28378.5 9484.1237 47838.3145 8918.6855
C3H/HeJ m 79214.85 9484.1237 98674.6645 59755.0355
C57BL/6J m 33395.52 5998.2865 45702.9874 21088.0526
CXB11/HiAJ m 36665.65 9484.1237 56125.4645 17205.8355
CXB12/HiAJ m 22226.05 9484.1237 41685.8645 2766.2355
CXB13/HiAJ m 35591.6 7743.7546 51480.472 19702.728
CXB1/ByJ m 28399.2 9484.1237 47859.0145 8939.3855
CXB2/ByJ m 36670.3333 7743.7546 52559.2054 20781.4613
CXB6/ByJ m 32428.3333 7743.7546 48317.2054 16539.4613
CXB7/ByJ m 22425.25 9484.1237 41885.0645 2965.4355
CXB8/HiAJ m 29284.4667 7743.7546 45173.3387 13395.5946
DBA/2J m 42627.0 6706.2882 56387.1668 28866.8332




  GWAS USING LINEAR MIXED MODELS