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Project measure / variable:   HMDPpheno6   Thr

ID, description, units MPD:50132   Thr   liver threonine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver threonine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means8464809   None
Median of the strain means8236278   None
SD of the strain means± 2053972
Coefficient of variation (CV)0.243
Min–max range of strain means4345794   –   17075288   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 225778242331035.0 10751344872906.4 12.2479 < 0.0001
Residuals 34 29845473250665.2 877808036784.27


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 7962410.0 0.0   1   0.0 0.0 7962410.0, 7962410.0 -0.24
A/J m 7343688.0 90957.0   2   64316.0 0.0124 7279372.0, 7408004.0 -0.55
AKR/J m 6826638.0 0.0   1   0.0 0.0 6826638.0, 6826638.0 -0.8
AXB10/PgnJ m 8449119.0 0.0   1   0.0 0.0 8449119.0, 8449119.0 -0.01
AXB12/PgnJ m 5902809.0 0.0   1   0.0 0.0 5902809.0, 5902809.0 -1.25
AXB13/PgnJ m 7471334.0 0.0   1   0.0 0.0 7471334.0, 7471334.0 -0.48
AXB15/PgnJ m 8253042.0 0.0   1   0.0 0.0 8253042.0, 8253042.0 -0.1
AXB19a/PgnJ m 9103537.0 0.0   1   0.0 0.0 9103537.0, 9103537.0 0.31
AXB19b/PgnJ m 13757266.0 174773.0   2   123583.0 0.0127 13633683.0, 13880850.0 2.58
AXB19/PgnJ m 11814933.0 0.0   1   0.0 0.0 11814933.0, 11814933.0 1.63
AXB1/PgnJ m 12172708.0 0.0   1   0.0 0.0 12172708.0, 12172708.0 1.81
AXB23/PgnJ m 8609416.0 0.0   1   0.0 0.0 8609416.0, 8609416.0 0.07
AXB24/PgnJ m 5740627.0 9277.0   2   6560.0 0.00162 5734068.0, 5747186.0 -1.33
AXB2/PgnJ m 6849640.0 0.0   1   0.0 0.0 6849640.0, 6849640.0 -0.79
AXB4/PgnJ m 11610050.0 0.0   1   0.0 0.0 11610050.0, 11610050.0 1.53
AXB5/PgnJ m 5643052.0 0.0   1   0.0 0.0 5643052.0, 5643052.0 -1.37
AXB6/PgnJ m 10633027.0 0.0   1   0.0 0.0 10633027.0, 10633027.0 1.06
AXB8/PgnJ m 7488012.0 0.0   1   0.0 0.0 7488012.0, 7488012.0 -0.48
BALB/cJ m 7943746.0 527249.0   3 304407.0 0.0664 7558053.0, 8544541.0 -0.25
BTBR T+ Itpr3tf/J m 7156160.0 0.0   1   0.0 0.0 7156160.0, 7156160.0 -0.64
BUB/BnJ m 9950222.0 0.0   1   0.0 0.0 9950222.0, 9950222.0 0.72
BXA11/PgnJ m 7174166.0 0.0   1   0.0 0.0 7174166.0, 7174166.0 -0.63
BXA12/PgnJ m 4345794.0 0.0   1   0.0 0.0 4345794.0, 4345794.0 -2.01
BXA13/PgnJ m 9267703.0 0.0   1   0.0 0.0 9267703.0, 9267703.0 0.39
BXA14/PgnJ m 10472564.0 0.0   1   0.0 0.0 10472564.0, 10472564.0 0.98
BXA16/PgnJ m 7711158.0 1911199.0   2   1351422.0 0.248 6359737.0, 9062580.0 -0.37
BXA1/PgnJ m 9518905.0 0.0   1   0.0 0.0 9518905.0, 9518905.0 0.51
BXA24/PgnJ m 12721639.0 0.0   1   0.0 0.0 12721639.0, 12721639.0 2.07
BXA25/PgnJ m 5837294.0 0.0   1   0.0 0.0 5837294.0, 5837294.0 -1.28
BXA26/PgnJ m 10149696.0 0.0   1   0.0 0.0 10149696.0, 10149696.0 0.82
BXA2/PgnJ m 8946565.0 0.0   1   0.0 0.0 8946565.0, 8946565.0 0.23
BXA4/PgnJ m 5744091.0 0.0   1   0.0 0.0 5744091.0, 5744091.0 -1.32
BXA7/PgnJ m 10447992.0 0.0   1   0.0 0.0 10447992.0, 10447992.0 0.97
BXA8/PgnJ m 6278739.0 0.0   1   0.0 0.0 6278739.0, 6278739.0 -1.06
BXD11/TyJ m 7490563.0 0.0   1   0.0 0.0 7490563.0, 7490563.0 -0.47
BXD12/TyJ m 9982428.0 0.0   1   0.0 0.0 9982428.0, 9982428.0 0.74
BXD13/TyJ m 7944649.0 0.0   1   0.0 0.0 7944649.0, 7944649.0 -0.25
BXD14/TyJ m 10038021.0 0.0   1   0.0 0.0 10038021.0, 10038021.0 0.77
BXD15/TyJ m 9856427.0 0.0   1   0.0 0.0 9856427.0, 9856427.0 0.68
BXD18/TyJ m 6946627.0 0.0   1   0.0 0.0 6946627.0, 6946627.0 -0.74
BXD19/TyJ m 6848932.0 66056.0   2   46708.0 0.00964 6802224.0, 6895640.0 -0.79
BXD1/TyJ m 7834412.0 0.0   1   0.0 0.0 7834412.0, 7834412.0 -0.31
BXD20/TyJ m 9152411.0 0.0   1   0.0 0.0 9152411.0, 9152411.0 0.33
BXD21/TyJ m 5462008.0 0.0   1   0.0 0.0 5462008.0, 5462008.0 -1.46
BXD22/TyJ m 9894839.0 0.0   1   0.0 0.0 9894839.0, 9894839.0 0.7
BXD24/TyJ m 6600357.0 0.0   1   0.0 0.0 6600357.0, 6600357.0 -0.91
BXD24/TyJ-Cep290rd16/J m 6292054.0 0.0   1   0.0 0.0 6292054.0, 6292054.0 -1.06
BXD28/TyJ m 8460425.0 885441.0   2   626101.0 0.105 7834324.0, 9086526.0 0.0
BXD29-Tlr4lps-2J/J m 9255008.0 0.0   1   0.0 0.0 9255008.0, 9255008.0 0.38
BXD2/TyJ m 11745596.0 0.0   1   0.0 0.0 11745596.0, 11745596.0 1.6
BXD32/TyJ m 10782726.0 0.0   1   0.0 0.0 10782726.0, 10782726.0 1.13
BXD33/TyJ m 12068569.0 0.0   1   0.0 0.0 12068569.0, 12068569.0 1.75
BXD34/TyJ m 8282630.0 0.0   1   0.0 0.0 8282630.0, 8282630.0 -0.09
BXD36/TyJ m 7006751.0 0.0   1   0.0 0.0 7006751.0, 7006751.0 -0.71
BXD38/TyJ m 6701934.0 0.0   1   0.0 0.0 6701934.0, 6701934.0 -0.86
BXD39/TyJ m 7878377.0 0.0   1   0.0 0.0 7878377.0, 7878377.0 -0.29
BXD40/TyJ m 8799518.0 0.0   1   0.0 0.0 8799518.0, 8799518.0 0.16
BXD42/TyJ m 5654624.0 0.0   1   0.0 0.0 5654624.0, 5654624.0 -1.37
BXD5/TyJ m 8516619.0 0.0   1   0.0 0.0 8516619.0, 8516619.0 0.03
BXD6/TyJ m 6917098.0 0.0   1   0.0 0.0 6917098.0, 6917098.0 -0.75
BXD8/TyJ m 6336020.0 0.0   1   0.0 0.0 6336020.0, 6336020.0 -1.04
BXD9/TyJ m 6828182.0 0.0   1   0.0 0.0 6828182.0, 6828182.0 -0.8
BXH10/TyJ m 6850352.0 0.0   1   0.0 0.0 6850352.0, 6850352.0 -0.79
BXH19/TyJ m 7751022.0 0.0   1   0.0 0.0 7751022.0, 7751022.0 -0.35
BXH20/KccJ m 10638275.0 0.0   1   0.0 0.0 10638275.0, 10638275.0 1.06
BXH22/KccJ m 8963083.0 0.0   1   0.0 0.0 8963083.0, 8963083.0 0.24
BXH2/TyJ m 9875218.0 0.0   1   0.0 0.0 9875218.0, 9875218.0 0.69
BXH4/TyJ m 8818371.0 2019921.0   2   1428300.0 0.229 7390071.0, 10246671.0 0.17
BXH6/TyJ m 10442293.0 0.0   1   0.0 0.0 10442293.0, 10442293.0 0.96
BXH7/TyJ m 8219514.0 0.0   1   0.0 0.0 8219514.0, 8219514.0 -0.12
BXH8/TyJ m 8775612.0 0.0   1   0.0 0.0 8775612.0, 8775612.0 0.15
BXH9/TyJ m 7243797.0 0.0   1   0.0 0.0 7243797.0, 7243797.0 -0.59
C3H/HeJ m 8602034.0 308002.0   2   217790.0 0.0358 8384244.0, 8819824.0 0.07
C57BL/6J m 11895815.0 1143466.0   5 511373.0 0.0961 10605419.0, 13699471.0 1.67
C57L/J m 5302756.0 0.0   1   0.0 0.0 5302756.0, 5302756.0 -1.54
C58/J m 17075288.0 0.0   1   0.0 0.0 17075288.0, 17075288.0 4.19
CAST/EiJ m 7327788.0 0.0   1   0.0 0.0 7327788.0, 7327788.0 -0.55
CBA/J m 6277534.0 0.0   1   0.0 0.0 6277534.0, 6277534.0 -1.06
CE/J m 8256088.0 0.0   1   0.0 0.0 8256088.0, 8256088.0 -0.1
CXB11/HiAJ m 8157051.0 722005.0   2   510535.0 0.0885 7646516.0, 8667586.0 -0.15
CXB12/HiAJ m 10028780.0 1784183.0   2   1261608.0 0.178 8767172.0, 11290388.0 0.76
CXB13/HiAJ m 10533194.0 615315.0   3 355252.0 0.0584 9822691.0, 10889676.0 1.01
CXB1/ByJ m 7820520.0 961050.0   3 554863.0 0.123 6823179.0, 8740618.0 -0.31
CXB2/ByJ m 10109656.0 1229202.0   3 709680.0 0.122 8737571.0, 11110302.0 0.8
CXB3/ByJ m 8991921.0 728150.0   2   514880.0 0.081 8477041.0, 9506801.0 0.26
CXB4/ByJ m 9176310.0 189816.0   2   134220.0 0.0207 9042089.0, 9310530.0 0.35
CXB6/ByJ m 8611749.0 1119181.0   3 646160.0 0.13 7468243.0, 9704906.0 0.07
CXB7/ByJ m 9736912.0 181330.0   2   128220.0 0.0186 9608693.0, 9865132.0 0.62
CXB8/HiAJ m 12313777.0 1059772.0   3 611859.0 0.0861 11094881.0, 13017223.0 1.87
CXB9/HiAJ m 10170564.0 229725.0   3 132632.0 0.0226 9994295.0, 10430368.0 0.83
DBA/2J m 5874972.0 453715.0   4 226857.0 0.0772 5461371.0, 6418404.0 -1.26
FVB/NJ m 6123892.0 0.0   1   0.0 0.0 6123892.0, 6123892.0 -1.14
I/LnJ m 9237444.0 0.0   1   0.0 0.0 9237444.0, 9237444.0 0.38
KK/HlJ m 7424732.0 0.0   1   0.0 0.0 7424732.0, 7424732.0 -0.51
LG/J m 6471522.0 0.0   1   0.0 0.0 6471522.0, 6471522.0 -0.97
LP/J m 7295092.0 0.0   1   0.0 0.0 7295092.0, 7295092.0 -0.57
MA/MyJ m 6859796.0 0.0   1   0.0 0.0 6859796.0, 6859796.0 -0.78
NOD/ShiLtJ m 8146729.0 0.0   1   0.0 0.0 8146729.0, 8146729.0 -0.15
NON/ShiLtJ m 8067666.0 0.0   1   0.0 0.0 8067666.0, 8067666.0 -0.19
NZW/LacJ m 6933533.0 0.0   1   0.0 0.0 6933533.0, 6933533.0 -0.75
PL/J m 9429653.0 0.0   1   0.0 0.0 9429653.0, 9429653.0 0.47
RIIIS/J m 6306156.0 0.0   1   0.0 0.0 6306156.0, 6306156.0 -1.05
SEA/GnJ m 7440421.0 0.0   1   0.0 0.0 7440421.0, 7440421.0 -0.5
SJL/J m 6402586.0 0.0   1   0.0 0.0 6402586.0, 6402586.0 -1.0
SM/J m 8654710.0 0.0   1   0.0 0.0 8654710.0, 8654710.0 0.09
SWR/J m 9760023.0 0.0   1   0.0 0.0 9760023.0, 9760023.0 0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 7343688.0 662498.3158 8690046.5646 5997329.4354
AXB19b/PgnJ m 13757266.5 662498.3158 15103625.0646 12410907.9354
AXB24/PgnJ m 5740627.0 662498.3158 7086985.5646 4394268.4354
BALB/cJ m 7943746.0 540927.6097 9043043.1647 6844448.8353
BXA16/PgnJ m 7711158.5 662498.3158 9057517.0646 6364799.9354
BXD19/TyJ m 6848932.0 662498.3158 8195290.5646 5502573.4354
BXD28/TyJ m 8460424.75 662498.3158 9806783.3146 7114066.1854
BXH4/TyJ m 8818371.0 662498.3158 10164729.5646 7472012.4354
C3H/HeJ m 8602033.75 662498.3158 9948392.3146 7255675.1854
C57BL/6J m 11895814.8 419000.7248 12747326.7223 11044302.8777
CXB11/HiAJ m 8157051.25 662498.3158 9503409.8146 6810692.6854
CXB12/HiAJ m 10028780.0 662498.3158 11375138.5646 8682421.4354
CXB13/HiAJ m 10533193.6667 540927.6097 11632490.8314 9433896.5019
CXB1/ByJ m 7820519.8333 540927.6097 8919816.9981 6721222.6686
CXB2/ByJ m 10109656.3333 540927.6097 11208953.4981 9010359.1686
CXB3/ByJ m 8991921.0 662498.3158 10338279.5646 7645562.4354
CXB4/ByJ m 9176309.5 662498.3158 10522668.0646 7829950.9354
CXB6/ByJ m 8611748.6667 540927.6097 9711045.8314 7512451.5019
CXB7/ByJ m 9736912.5 662498.3158 11083271.0646 8390553.9354
CXB8/HiAJ m 12313776.6667 540927.6097 13413073.8314 11214479.5019
CXB9/HiAJ m 10170564.3333 540927.6097 11269861.4981 9071267.1686
DBA/2J m 5874972.0 468457.0516 6826991.271 4922952.729




  GWAS USING LINEAR MIXED MODELS