Project measure / variable:   HMDPpheno6   Ser

ID, description, units MPD:50131   Ser   liver serine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver serine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means28335051   None
Median of the strain means28152353   None
SD of the strain means± 6818723
Coefficient of variation (CV)0.241
Min–max range of strain means16244380   –   57167996   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 2317252369601260.0 110345350933393.0 12.6478 < 0.0001
Residuals 34 296632863953733.0 8724495998639.2


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 25990624.0 0.0   1   0.0 0.0 25990624.0, 25990624.0 -0.34
A/J m 23138005.0 826417.0   2   584365.0 0.0357 22553640.0, 23722370.0 -0.76
AKR/J m 22689166.0 0.0   1   0.0 0.0 22689166.0, 22689166.0 -0.83
AXB10/PgnJ m 28199132.0 0.0   1   0.0 0.0 28199132.0, 28199132.0 -0.02
AXB12/PgnJ m 19488990.0 0.0   1   0.0 0.0 19488990.0, 19488990.0 -1.3
AXB13/PgnJ m 28445088.0 0.0   1   0.0 0.0 28445088.0, 28445088.0 0.02
AXB15/PgnJ m 28274340.0 0.0   1   0.0 0.0 28274340.0, 28274340.0 -0.01
AXB19a/PgnJ m 29864298.0 0.0   1   0.0 0.0 29864298.0, 29864298.0 0.22
AXB19b/PgnJ m 46683580.0 66519.0   2   47036.0 0.00142 46636544.0, 46730616.0 2.69
AXB19/PgnJ m 40426748.0 0.0   1   0.0 0.0 40426748.0, 40426748.0 1.77
AXB1/PgnJ m 40203840.0 0.0   1   0.0 0.0 40203840.0, 40203840.0 1.74
AXB23/PgnJ m 28105574.0 0.0   1   0.0 0.0 28105574.0, 28105574.0 -0.03
AXB24/PgnJ m 18593508.0 530180.0   2   374894.0 0.0285 18218614.0, 18968402.0 -1.43
AXB2/PgnJ m 23845886.0 0.0   1   0.0 0.0 23845886.0, 23845886.0 -0.66
AXB4/PgnJ m 38658944.0 0.0   1   0.0 0.0 38658944.0, 38658944.0 1.51
AXB5/PgnJ m 17605986.0 0.0   1   0.0 0.0 17605986.0, 17605986.0 -1.57
AXB6/PgnJ m 33157728.0 0.0   1   0.0 0.0 33157728.0, 33157728.0 0.71
AXB8/PgnJ m 23958716.0 0.0   1   0.0 0.0 23958716.0, 23958716.0 -0.64
BALB/cJ m 28327088.0 672144.0   3 388062.0 0.0237 27649002.0, 28993128.0 0.0
BTBR T+ Itpr3tf/J m 24053966.0 0.0   1   0.0 0.0 24053966.0, 24053966.0 -0.63
BUB/BnJ m 36244796.0 0.0   1   0.0 0.0 36244796.0, 36244796.0 1.16
BXA11/PgnJ m 22338364.0 0.0   1   0.0 0.0 22338364.0, 22338364.0 -0.88
BXA12/PgnJ m 16244380.0 0.0   1   0.0 0.0 16244380.0, 16244380.0 -1.77
BXA13/PgnJ m 33138830.0 0.0   1   0.0 0.0 33138830.0, 33138830.0 0.7
BXA14/PgnJ m 35006688.0 0.0   1   0.0 0.0 35006688.0, 35006688.0 0.98
BXA16/PgnJ m 26962363.0 5692338.0   2   4025091.0 0.211 22937272.0, 30987454.0 -0.2
BXA1/PgnJ m 30459560.0 0.0   1   0.0 0.0 30459560.0, 30459560.0 0.31
BXA24/PgnJ m 40362080.0 0.0   1   0.0 0.0 40362080.0, 40362080.0 1.76
BXA25/PgnJ m 20650196.0 0.0   1   0.0 0.0 20650196.0, 20650196.0 -1.13
BXA26/PgnJ m 31259790.0 0.0   1   0.0 0.0 31259790.0, 31259790.0 0.43
BXA2/PgnJ m 28493836.0 0.0   1   0.0 0.0 28493836.0, 28493836.0 0.02
BXA4/PgnJ m 19765870.0 0.0   1   0.0 0.0 19765870.0, 19765870.0 -1.26
BXA7/PgnJ m 32759746.0 0.0   1   0.0 0.0 32759746.0, 32759746.0 0.65
BXA8/PgnJ m 18747494.0 0.0   1   0.0 0.0 18747494.0, 18747494.0 -1.41
BXD11/TyJ m 24470820.0 0.0   1   0.0 0.0 24470820.0, 24470820.0 -0.57
BXD12/TyJ m 35390084.0 0.0   1   0.0 0.0 35390084.0, 35390084.0 1.03
BXD13/TyJ m 26472012.0 0.0   1   0.0 0.0 26472012.0, 26472012.0 -0.27
BXD14/TyJ m 32296646.0 0.0   1   0.0 0.0 32296646.0, 32296646.0 0.58
BXD15/TyJ m 33559180.0 0.0   1   0.0 0.0 33559180.0, 33559180.0 0.77
BXD18/TyJ m 25232438.0 0.0   1   0.0 0.0 25232438.0, 25232438.0 -0.46
BXD19/TyJ m 24851419.0 1569535.0   2   1109829.0 0.0632 23741590.0, 25961248.0 -0.51
BXD1/TyJ m 25286894.0 0.0   1   0.0 0.0 25286894.0, 25286894.0 -0.45
BXD20/TyJ m 30699164.0 0.0   1   0.0 0.0 30699164.0, 30699164.0 0.35
BXD21/TyJ m 19578354.0 0.0   1   0.0 0.0 19578354.0, 19578354.0 -1.28
BXD22/TyJ m 33540570.0 0.0   1   0.0 0.0 33540570.0, 33540570.0 0.76
BXD24/TyJ m 21898192.0 0.0   1   0.0 0.0 21898192.0, 21898192.0 -0.94
BXD24/TyJ-Cep290rd16/J m 21813666.0 0.0   1   0.0 0.0 21813666.0, 21813666.0 -0.96
BXD28/TyJ m 28933782.0 1711891.0   2   1210490.0 0.0592 27723292.0, 30144272.0 0.09
BXD29-Tlr4lps-2J/J m 31343470.0 0.0   1   0.0 0.0 31343470.0, 31343470.0 0.44
BXD2/TyJ m 41182204.0 0.0   1   0.0 0.0 41182204.0, 41182204.0 1.88
BXD32/TyJ m 35034144.0 0.0   1   0.0 0.0 35034144.0, 35034144.0 0.98
BXD33/TyJ m 39576828.0 0.0   1   0.0 0.0 39576828.0, 39576828.0 1.65
BXD34/TyJ m 28841070.0 0.0   1   0.0 0.0 28841070.0, 28841070.0 0.07
BXD36/TyJ m 23803380.0 0.0   1   0.0 0.0 23803380.0, 23803380.0 -0.66
BXD38/TyJ m 23312948.0 0.0   1   0.0 0.0 23312948.0, 23312948.0 -0.74
BXD39/TyJ m 26110872.0 0.0   1   0.0 0.0 26110872.0, 26110872.0 -0.33
BXD40/TyJ m 30980720.0 0.0   1   0.0 0.0 30980720.0, 30980720.0 0.39
BXD42/TyJ m 18788678.0 0.0   1   0.0 0.0 18788678.0, 18788678.0 -1.4
BXD5/TyJ m 27507706.0 0.0   1   0.0 0.0 27507706.0, 27507706.0 -0.12
BXD6/TyJ m 25002710.0 0.0   1   0.0 0.0 25002710.0, 25002710.0 -0.49
BXD8/TyJ m 19775134.0 0.0   1   0.0 0.0 19775134.0, 19775134.0 -1.26
BXD9/TyJ m 23470788.0 0.0   1   0.0 0.0 23470788.0, 23470788.0 -0.71
BXH10/TyJ m 21215362.0 0.0   1   0.0 0.0 21215362.0, 21215362.0 -1.04
BXH19/TyJ m 24557220.0 0.0   1   0.0 0.0 24557220.0, 24557220.0 -0.55
BXH20/KccJ m 37576704.0 0.0   1   0.0 0.0 37576704.0, 37576704.0 1.36
BXH22/KccJ m 31873850.0 0.0   1   0.0 0.0 31873850.0, 31873850.0 0.52
BXH2/TyJ m 33640404.0 0.0   1   0.0 0.0 33640404.0, 33640404.0 0.78
BXH4/TyJ m 28958365.0 6599454.0   2   4666519.0 0.228 24291846.0, 33624884.0 0.09
BXH6/TyJ m 32477202.0 0.0   1   0.0 0.0 32477202.0, 32477202.0 0.61
BXH7/TyJ m 27892220.0 0.0   1   0.0 0.0 27892220.0, 27892220.0 -0.06
BXH8/TyJ m 30295634.0 0.0   1   0.0 0.0 30295634.0, 30295634.0 0.29
BXH9/TyJ m 25299066.0 0.0   1   0.0 0.0 25299066.0, 25299066.0 -0.45
C3H/HeJ m 29236203.0 2203686.0   2   1558241.0 0.0754 27677962.0, 30794444.0 0.13
C57BL/6J m 38934528.0 3917645.0   5 1752024.0 0.101 35691140.0, 45551484.0 1.55
C57L/J m 19634780.0 0.0   1   0.0 0.0 19634780.0, 19634780.0 -1.28
C58/J m 57167996.0 0.0   1   0.0 0.0 57167996.0, 57167996.0 4.23
CAST/EiJ m 25335946.0 0.0   1   0.0 0.0 25335946.0, 25335946.0 -0.44
CBA/J m 20879466.0 0.0   1   0.0 0.0 20879466.0, 20879466.0 -1.09
CE/J m 29079432.0 0.0   1   0.0 0.0 29079432.0, 29079432.0 0.11
CXB11/HiAJ m 28023700.0 1023633.0   2   723818.0 0.0365 27299882.0, 28747518.0 -0.05
CXB12/HiAJ m 32548598.0 4054627.0   2   2867054.0 0.125 29681544.0, 35415652.0 0.62
CXB13/HiAJ m 34321421.0 2112218.0   3 1219489.0 0.0615 33066018.0, 36760044.0 0.88
CXB1/ByJ m 25802551.0 3437592.0   3 1984695.0 0.133 23347882.0, 29731364.0 -0.37
CXB2/ByJ m 33460305.0 4479588.0   3 2586291.0 0.134 28452812.0, 37086756.0 0.75
CXB3/ByJ m 30291079.0 1055573.0   2   746403.0 0.0348 29544676.0, 31037482.0 0.29
CXB4/ByJ m 28960710.0 649339.0   2   459152.0 0.0224 28501558.0, 29419862.0 0.09
CXB6/ByJ m 29691307.0 3215993.0   3 1856755.0 0.108 26541902.0, 32969990.0 0.2
CXB7/ByJ m 32838324.0 868064.0   2   613814.0 0.0264 32224510.0, 33452138.0 0.66
CXB8/HiAJ m 40519872.0 2031743.0   3 1173028.0 0.0501 38226364.0, 42094232.0 1.79
CXB9/HiAJ m 31997979.0 2388174.0   3 1378813.0 0.0746 29705496.0, 34471536.0 0.54
DBA/2J m 19924512.0 2186908.0   4 1093454.0 0.11 18422398.0, 23085838.0 -1.23
FVB/NJ m 22128158.0 0.0   1   0.0 0.0 22128158.0, 22128158.0 -0.91
I/LnJ m 29760216.0 0.0   1   0.0 0.0 29760216.0, 29760216.0 0.21
KK/HlJ m 24394424.0 0.0   1   0.0 0.0 24394424.0, 24394424.0 -0.58
LG/J m 22127500.0 0.0   1   0.0 0.0 22127500.0, 22127500.0 -0.91
LP/J m 24234934.0 0.0   1   0.0 0.0 24234934.0, 24234934.0 -0.6
MA/MyJ m 22422176.0 0.0   1   0.0 0.0 22422176.0, 22422176.0 -0.87
NOD/ShiLtJ m 26035472.0 0.0   1   0.0 0.0 26035472.0, 26035472.0 -0.34
NON/ShiLtJ m 26483252.0 0.0   1   0.0 0.0 26483252.0, 26483252.0 -0.27
NZW/LacJ m 21616708.0 0.0   1   0.0 0.0 21616708.0, 21616708.0 -0.99
PL/J m 32787230.0 0.0   1   0.0 0.0 32787230.0, 32787230.0 0.65
RIIIS/J m 19357112.0 0.0   1   0.0 0.0 19357112.0, 19357112.0 -1.32
SEA/GnJ m 25329704.0 0.0   1   0.0 0.0 25329704.0, 25329704.0 -0.44
SJL/J m 20181360.0 0.0   1   0.0 0.0 20181360.0, 20181360.0 -1.2
SM/J m 29438940.0 0.0   1   0.0 0.0 29438940.0, 29438940.0 0.16
SWR/J m 33884368.0 0.0   1   0.0 0.0 33884368.0, 33884368.0 0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 23138005.0 2088599.5306 27382549.9283 18893460.0717
AXB19b/PgnJ m 46683580.0 2088599.5306 50928124.9283 42439035.0717
AXB24/PgnJ m 18593508.0 2088599.5306 22838052.9283 14348963.0717
BALB/cJ m 28327088.0 1705334.3757 31792744.4215 24861431.5785
BXA16/PgnJ m 26962363.0 2088599.5306 31206907.9283 22717818.0717
BXD19/TyJ m 24851419.0 2088599.5306 29095963.9283 20606874.0717
BXD28/TyJ m 28933782.0 2088599.5306 33178326.9283 24689237.0717
BXH4/TyJ m 28958365.0 2088599.5306 33202909.9283 24713820.0717
C3H/HeJ m 29236203.0 2088599.5306 33480747.9283 24991658.0717
C57BL/6J m 38934528.0 1320946.3273 41619013.9209 36250042.0791
CXB11/HiAJ m 28023700.0 2088599.5306 32268244.9283 23779155.0717
CXB12/HiAJ m 32548598.0 2088599.5306 36793142.9283 28304053.0717
CXB13/HiAJ m 34321421.3333 1705334.3757 37787077.7549 30855764.9118
CXB1/ByJ m 25802550.6667 1705334.3757 29268207.0882 22336894.2451
CXB2/ByJ m 33460305.3333 1705334.3757 36925961.7549 29994648.9118
CXB3/ByJ m 30291079.0 2088599.5306 34535623.9283 26046534.0717
CXB4/ByJ m 28960710.0 2088599.5306 33205254.9283 24716165.0717
CXB6/ByJ m 29691306.6667 1705334.3757 33156963.0882 26225650.2451
CXB7/ByJ m 32838324.0 2088599.5306 37082868.9283 28593779.0717
CXB8/HiAJ m 40519872.0 1705334.3757 43985528.4215 37054215.5785
CXB9/HiAJ m 31997978.6667 1705334.3757 35463635.0882 28532322.2451
DBA/2J m 19924512.5 1476862.8913 22925859.0018 16923165.9982




  GWAS USING LINEAR MIXED MODELS