Project measure / variable:   HMDPpheno6   Ser

ID, description, units MPD:50131   Ser   liver serine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver serine (16h fast), relative abundance

C58/JAXB19b/PgnJBXD2/TyJCXB8/HiAJAXB19/PgnJBXA24/PgnJAXB1/PgnJBXD33/TyJC57BL/6JAXB4/PgnJBXH20/KccJBUB/BnJBXD12/TyJBXD32/TyJBXA14/PgnJCXB13/HiAJSWR/JBXH2/TyJBXD15/TyJBXD22/TyJCXB2/ByJAXB6/PgnJBXA13/PgnJCXB7/ByJPL/JBXA7/PgnJCXB12/HiAJBXH6/TyJBXD14/TyJCXB9/HiAJBXH22/KccJBXD29-Tlr4<lps-2J>/JBXA26/PgnJBXD40/TyJBXD20/TyJBXA1/PgnJBXH8/TyJCXB3/ByJAXB19a/PgnJI/LnJCXB6/ByJSM/JC3H/HeJCE/JCXB4/ByJBXH4/TyJBXD28/TyJBXD34/TyJBXA2/PgnJAXB13/PgnJBALB/cJAXB15/PgnJAXB10/PgnJAXB23/PgnJCXB11/HiAJBXH7/TyJBXD5/TyJBXA16/PgnJNON/ShiLtJBXD13/TyJBXD39/TyJNOD/ShiLtJ129X1/SvJCXB1/ByJCAST/EiJSEA/GnJBXH9/TyJBXD1/TyJBXD18/TyJBXD6/TyJBXD19/TyJBXH19/TyJBXD11/TyJKK/HlJLP/JBTBR T<+> Itpr3<tf>/JAXB8/PgnJAXB2/PgnJBXD36/TyJBXD9/TyJBXD38/TyJA/JAKR/JMA/MyJBXA11/PgnJFVB/NJLG/JBXD24/TyJBXD24/TyJ-Cep290<rd16>/JNZW/LacJBXH10/TyJCBA/JBXA25/PgnJSJL/JDBA/2JBXD8/TyJBXA4/PgnJC57L/JBXD21/TyJAXB12/PgnJRIIIS/JBXD42/TyJBXA8/PgnJAXB24/PgnJAXB5/PgnJBXA12/PgnJ (no units) 15,000,00020,000,00025,000,00030,000,00035,000,00040,000,00045,000,00050,000,00055,000,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means28335051   None
Median of the strain means28152353   None
SD of the strain means± 6818723
Coefficient of variation (CV)0.241
Min–max range of strain means16244380   –   57167996   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 2317252369601260.0 110345350933393.0 12.6478 < 0.0001
Residuals 34 296632863953733.0 8724495998639.2


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 25990624.0 0.0   1   0.0 0.0 25990624.0, 25990624.0 -0.34
A/J m 23138005.0 826417.0   2   584365.0 0.0357 22553640.0, 23722370.0 -0.76
AKR/J m 22689166.0 0.0   1   0.0 0.0 22689166.0, 22689166.0 -0.83
AXB10/PgnJ m 28199132.0 0.0   1   0.0 0.0 28199132.0, 28199132.0 -0.02
AXB12/PgnJ m 19488990.0 0.0   1   0.0 0.0 19488990.0, 19488990.0 -1.3
AXB13/PgnJ m 28445088.0 0.0   1   0.0 0.0 28445088.0, 28445088.0 0.02
AXB15/PgnJ m 28274340.0 0.0   1   0.0 0.0 28274340.0, 28274340.0 -0.01
AXB19a/PgnJ m 29864298.0 0.0   1   0.0 0.0 29864298.0, 29864298.0 0.22
AXB19b/PgnJ m 46683580.0 66519.0   2   47036.0 0.00142 46636544.0, 46730616.0 2.69
AXB19/PgnJ m 40426748.0 0.0   1   0.0 0.0 40426748.0, 40426748.0 1.77
AXB1/PgnJ m 40203840.0 0.0   1   0.0 0.0 40203840.0, 40203840.0 1.74
AXB23/PgnJ m 28105574.0 0.0   1   0.0 0.0 28105574.0, 28105574.0 -0.03
AXB24/PgnJ m 18593508.0 530180.0   2   374894.0 0.0285 18218614.0, 18968402.0 -1.43
AXB2/PgnJ m 23845886.0 0.0   1   0.0 0.0 23845886.0, 23845886.0 -0.66
AXB4/PgnJ m 38658944.0 0.0   1   0.0 0.0 38658944.0, 38658944.0 1.51
AXB5/PgnJ m 17605986.0 0.0   1   0.0 0.0 17605986.0, 17605986.0 -1.57
AXB6/PgnJ m 33157728.0 0.0   1   0.0 0.0 33157728.0, 33157728.0 0.71
AXB8/PgnJ m 23958716.0 0.0   1   0.0 0.0 23958716.0, 23958716.0 -0.64
BALB/cJ m 28327088.0 672144.0   3 388062.0 0.0237 27649002.0, 28993128.0 0.0
BTBR T+ Itpr3tf/J m 24053966.0 0.0   1   0.0 0.0 24053966.0, 24053966.0 -0.63
BUB/BnJ m 36244796.0 0.0   1   0.0 0.0 36244796.0, 36244796.0 1.16
BXA11/PgnJ m 22338364.0 0.0   1   0.0 0.0 22338364.0, 22338364.0 -0.88
BXA12/PgnJ m 16244380.0 0.0   1   0.0 0.0 16244380.0, 16244380.0 -1.77
BXA13/PgnJ m 33138830.0 0.0   1   0.0 0.0 33138830.0, 33138830.0 0.7
BXA14/PgnJ m 35006688.0 0.0   1   0.0 0.0 35006688.0, 35006688.0 0.98
BXA16/PgnJ m 26962363.0 5692338.0   2   4025091.0 0.211 22937272.0, 30987454.0 -0.2
BXA1/PgnJ m 30459560.0 0.0   1   0.0 0.0 30459560.0, 30459560.0 0.31
BXA24/PgnJ m 40362080.0 0.0   1   0.0 0.0 40362080.0, 40362080.0 1.76
BXA25/PgnJ m 20650196.0 0.0   1   0.0 0.0 20650196.0, 20650196.0 -1.13
BXA26/PgnJ m 31259790.0 0.0   1   0.0 0.0 31259790.0, 31259790.0 0.43
BXA2/PgnJ m 28493836.0 0.0   1   0.0 0.0 28493836.0, 28493836.0 0.02
BXA4/PgnJ m 19765870.0 0.0   1   0.0 0.0 19765870.0, 19765870.0 -1.26
BXA7/PgnJ m 32759746.0 0.0   1   0.0 0.0 32759746.0, 32759746.0 0.65
BXA8/PgnJ m 18747494.0 0.0   1   0.0 0.0 18747494.0, 18747494.0 -1.41
BXD11/TyJ m 24470820.0 0.0   1   0.0 0.0 24470820.0, 24470820.0 -0.57
BXD12/TyJ m 35390084.0 0.0   1   0.0 0.0 35390084.0, 35390084.0 1.03
BXD13/TyJ m 26472012.0 0.0   1   0.0 0.0 26472012.0, 26472012.0 -0.27
BXD14/TyJ m 32296646.0 0.0   1   0.0 0.0 32296646.0, 32296646.0 0.58
BXD15/TyJ m 33559180.0 0.0   1   0.0 0.0 33559180.0, 33559180.0 0.77
BXD18/TyJ m 25232438.0 0.0   1   0.0 0.0 25232438.0, 25232438.0 -0.46
BXD19/TyJ m 24851419.0 1569535.0   2   1109829.0 0.0632 23741590.0, 25961248.0 -0.51
BXD1/TyJ m 25286894.0 0.0   1   0.0 0.0 25286894.0, 25286894.0 -0.45
BXD20/TyJ m 30699164.0 0.0   1   0.0 0.0 30699164.0, 30699164.0 0.35
BXD21/TyJ m 19578354.0 0.0   1   0.0 0.0 19578354.0, 19578354.0 -1.28
BXD22/TyJ m 33540570.0 0.0   1   0.0 0.0 33540570.0, 33540570.0 0.76
BXD24/TyJ m 21898192.0 0.0   1   0.0 0.0 21898192.0, 21898192.0 -0.94
BXD24/TyJ-Cep290rd16/J m 21813666.0 0.0   1   0.0 0.0 21813666.0, 21813666.0 -0.96
BXD28/TyJ m 28933782.0 1711891.0   2   1210490.0 0.0592 27723292.0, 30144272.0 0.09
BXD29-Tlr4lps-2J/J m 31343470.0 0.0   1   0.0 0.0 31343470.0, 31343470.0 0.44
BXD2/TyJ m 41182204.0 0.0   1   0.0 0.0 41182204.0, 41182204.0 1.88
BXD32/TyJ m 35034144.0 0.0   1   0.0 0.0 35034144.0, 35034144.0 0.98
BXD33/TyJ m 39576828.0 0.0   1   0.0 0.0 39576828.0, 39576828.0 1.65
BXD34/TyJ m 28841070.0 0.0   1   0.0 0.0 28841070.0, 28841070.0 0.07
BXD36/TyJ m 23803380.0 0.0   1   0.0 0.0 23803380.0, 23803380.0 -0.66
BXD38/TyJ m 23312948.0 0.0   1   0.0 0.0 23312948.0, 23312948.0 -0.74
BXD39/TyJ m 26110872.0 0.0   1   0.0 0.0 26110872.0, 26110872.0 -0.33
BXD40/TyJ m 30980720.0 0.0   1   0.0 0.0 30980720.0, 30980720.0 0.39
BXD42/TyJ m 18788678.0 0.0   1   0.0 0.0 18788678.0, 18788678.0 -1.4
BXD5/TyJ m 27507706.0 0.0   1   0.0 0.0 27507706.0, 27507706.0 -0.12
BXD6/TyJ m 25002710.0 0.0   1   0.0 0.0 25002710.0, 25002710.0 -0.49
BXD8/TyJ m 19775134.0 0.0   1   0.0 0.0 19775134.0, 19775134.0 -1.26
BXD9/TyJ m 23470788.0 0.0   1   0.0 0.0 23470788.0, 23470788.0 -0.71
BXH10/TyJ m 21215362.0 0.0   1   0.0 0.0 21215362.0, 21215362.0 -1.04
BXH19/TyJ m 24557220.0 0.0   1   0.0 0.0 24557220.0, 24557220.0 -0.55
BXH20/KccJ m 37576704.0 0.0   1   0.0 0.0 37576704.0, 37576704.0 1.36
BXH22/KccJ m 31873850.0 0.0   1   0.0 0.0 31873850.0, 31873850.0 0.52
BXH2/TyJ m 33640404.0 0.0   1   0.0 0.0 33640404.0, 33640404.0 0.78
BXH4/TyJ m 28958365.0 6599454.0   2   4666519.0 0.228 24291846.0, 33624884.0 0.09
BXH6/TyJ m 32477202.0 0.0   1   0.0 0.0 32477202.0, 32477202.0 0.61
BXH7/TyJ m 27892220.0 0.0   1   0.0 0.0 27892220.0, 27892220.0 -0.06
BXH8/TyJ m 30295634.0 0.0   1   0.0 0.0 30295634.0, 30295634.0 0.29
BXH9/TyJ m 25299066.0 0.0   1   0.0 0.0 25299066.0, 25299066.0 -0.45
C3H/HeJ m 29236203.0 2203686.0   2   1558241.0 0.0754 27677962.0, 30794444.0 0.13
C57BL/6J m 38934528.0 3917645.0   5 1752024.0 0.101 35691140.0, 45551484.0 1.55
C57L/J m 19634780.0 0.0   1   0.0 0.0 19634780.0, 19634780.0 -1.28
C58/J m 57167996.0 0.0   1   0.0 0.0 57167996.0, 57167996.0 4.23
CAST/EiJ m 25335946.0 0.0   1   0.0 0.0 25335946.0, 25335946.0 -0.44
CBA/J m 20879466.0 0.0   1   0.0 0.0 20879466.0, 20879466.0 -1.09
CE/J m 29079432.0 0.0   1   0.0 0.0 29079432.0, 29079432.0 0.11
CXB11/HiAJ m 28023700.0 1023633.0   2   723818.0 0.0365 27299882.0, 28747518.0 -0.05
CXB12/HiAJ m 32548598.0 4054627.0   2   2867054.0 0.125 29681544.0, 35415652.0 0.62
CXB13/HiAJ m 34321421.0 2112218.0   3 1219489.0 0.0615 33066018.0, 36760044.0 0.88
CXB1/ByJ m 25802551.0 3437592.0   3 1984695.0 0.133 23347882.0, 29731364.0 -0.37
CXB2/ByJ m 33460305.0 4479588.0   3 2586291.0 0.134 28452812.0, 37086756.0 0.75
CXB3/ByJ m 30291079.0 1055573.0   2   746403.0 0.0348 29544676.0, 31037482.0 0.29
CXB4/ByJ m 28960710.0 649339.0   2   459152.0 0.0224 28501558.0, 29419862.0 0.09
CXB6/ByJ m 29691307.0 3215993.0   3 1856755.0 0.108 26541902.0, 32969990.0 0.2
CXB7/ByJ m 32838324.0 868064.0   2   613814.0 0.0264 32224510.0, 33452138.0 0.66
CXB8/HiAJ m 40519872.0 2031743.0   3 1173028.0 0.0501 38226364.0, 42094232.0 1.79
CXB9/HiAJ m 31997979.0 2388174.0   3 1378813.0 0.0746 29705496.0, 34471536.0 0.54
DBA/2J m 19924512.0 2186908.0   4 1093454.0 0.11 18422398.0, 23085838.0 -1.23
FVB/NJ m 22128158.0 0.0   1   0.0 0.0 22128158.0, 22128158.0 -0.91
I/LnJ m 29760216.0 0.0   1   0.0 0.0 29760216.0, 29760216.0 0.21
KK/HlJ m 24394424.0 0.0   1   0.0 0.0 24394424.0, 24394424.0 -0.58
LG/J m 22127500.0 0.0   1   0.0 0.0 22127500.0, 22127500.0 -0.91
LP/J m 24234934.0 0.0   1   0.0 0.0 24234934.0, 24234934.0 -0.6
MA/MyJ m 22422176.0 0.0   1   0.0 0.0 22422176.0, 22422176.0 -0.87
NOD/ShiLtJ m 26035472.0 0.0   1   0.0 0.0 26035472.0, 26035472.0 -0.34
NON/ShiLtJ m 26483252.0 0.0   1   0.0 0.0 26483252.0, 26483252.0 -0.27
NZW/LacJ m 21616708.0 0.0   1   0.0 0.0 21616708.0, 21616708.0 -0.99
PL/J m 32787230.0 0.0   1   0.0 0.0 32787230.0, 32787230.0 0.65
RIIIS/J m 19357112.0 0.0   1   0.0 0.0 19357112.0, 19357112.0 -1.32
SEA/GnJ m 25329704.0 0.0   1   0.0 0.0 25329704.0, 25329704.0 -0.44
SJL/J m 20181360.0 0.0   1   0.0 0.0 20181360.0, 20181360.0 -1.2
SM/J m 29438940.0 0.0   1   0.0 0.0 29438940.0, 29438940.0 0.16
SWR/J m 33884368.0 0.0   1   0.0 0.0 33884368.0, 33884368.0 0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 23138005.0 2088599.5306 27382549.9283 18893460.0717
AXB19b/PgnJ m 46683580.0 2088599.5306 50928124.9283 42439035.0717
AXB24/PgnJ m 18593508.0 2088599.5306 22838052.9283 14348963.0717
BALB/cJ m 28327088.0 1705334.3757 31792744.4215 24861431.5785
BXA16/PgnJ m 26962363.0 2088599.5306 31206907.9283 22717818.0717
BXD19/TyJ m 24851419.0 2088599.5306 29095963.9283 20606874.0717
BXD28/TyJ m 28933782.0 2088599.5306 33178326.9283 24689237.0717
BXH4/TyJ m 28958365.0 2088599.5306 33202909.9283 24713820.0717
C3H/HeJ m 29236203.0 2088599.5306 33480747.9283 24991658.0717
C57BL/6J m 38934528.0 1320946.3273 41619013.9209 36250042.0791
CXB11/HiAJ m 28023700.0 2088599.5306 32268244.9283 23779155.0717
CXB12/HiAJ m 32548598.0 2088599.5306 36793142.9283 28304053.0717
CXB13/HiAJ m 34321421.3333 1705334.3757 37787077.7549 30855764.9118
CXB1/ByJ m 25802550.6667 1705334.3757 29268207.0882 22336894.2451
CXB2/ByJ m 33460305.3333 1705334.3757 36925961.7549 29994648.9118
CXB3/ByJ m 30291079.0 2088599.5306 34535623.9283 26046534.0717
CXB4/ByJ m 28960710.0 2088599.5306 33205254.9283 24716165.0717
CXB6/ByJ m 29691306.6667 1705334.3757 33156963.0882 26225650.2451
CXB7/ByJ m 32838324.0 2088599.5306 37082868.9283 28593779.0717
CXB8/HiAJ m 40519872.0 1705334.3757 43985528.4215 37054215.5785
CXB9/HiAJ m 31997978.6667 1705334.3757 35463635.0882 28532322.2451
DBA/2J m 19924512.5 1476862.8913 22925859.0018 16923165.9982




  GWAS USING LINEAR MIXED MODELS

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