Project measure / variable:   HMDPpheno6   Gly

ID, description, units MPD:50129   Gly   liver glycine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver glycine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means34123661   None
Median of the strain means32879489   None
SD of the strain means± 6237210
Coefficient of variation (CV)0.183
Min–max range of strain means22384110   –   53589752   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 2138856837846800.0 101850325611752.0 5.5742 < 0.0001
Residuals 34 621243440995994.0 18271865911646.9


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 29120694.0 0.0   1   0.0 0.0 29120694.0, 29120694.0 -0.8
A/J m 28250049.0 234767.0   2   166005.0 0.00831 28084044.0, 28416054.0 -0.94
AKR/J m 28116846.0 0.0   1   0.0 0.0 28116846.0, 28116846.0 -0.96
AXB10/PgnJ m 36994948.0 0.0   1   0.0 0.0 36994948.0, 36994948.0 0.46
AXB12/PgnJ m 29002972.0 0.0   1   0.0 0.0 29002972.0, 29002972.0 -0.82
AXB13/PgnJ m 31350858.0 0.0   1   0.0 0.0 31350858.0, 31350858.0 -0.44
AXB15/PgnJ m 36170940.0 0.0   1   0.0 0.0 36170940.0, 36170940.0 0.33
AXB19a/PgnJ m 36615880.0 0.0   1   0.0 0.0 36615880.0, 36615880.0 0.4
AXB19b/PgnJ m 53589752.0 8783754.0   2   6211052.0 0.164 47378700.0, 59800804.0 3.12
AXB19/PgnJ m 43510680.0 0.0   1   0.0 0.0 43510680.0, 43510680.0 1.51
AXB1/PgnJ m 38673084.0 0.0   1   0.0 0.0 38673084.0, 38673084.0 0.73
AXB23/PgnJ m 37477788.0 0.0   1   0.0 0.0 37477788.0, 37477788.0 0.54
AXB24/PgnJ m 24292298.0 214980.0   2   152014.0 0.00885 24140284.0, 24444312.0 -1.58
AXB2/PgnJ m 35895168.0 0.0   1   0.0 0.0 35895168.0, 35895168.0 0.28
AXB4/PgnJ m 43289504.0 0.0   1   0.0 0.0 43289504.0, 43289504.0 1.47
AXB5/PgnJ m 26712486.0 0.0   1   0.0 0.0 26712486.0, 26712486.0 -1.19
AXB6/PgnJ m 42437320.0 0.0   1   0.0 0.0 42437320.0, 42437320.0 1.33
AXB8/PgnJ m 31647340.0 0.0   1   0.0 0.0 31647340.0, 31647340.0 -0.4
BALB/cJ m 37891205.0 4484675.0   3 2589228.0 0.118 35195596.0, 43068184.0 0.6
BTBR T+ Itpr3tf/J m 27686674.0 0.0   1   0.0 0.0 27686674.0, 27686674.0 -1.03
BUB/BnJ m 39056572.0 0.0   1   0.0 0.0 39056572.0, 39056572.0 0.79
BXA11/PgnJ m 33295850.0 0.0   1   0.0 0.0 33295850.0, 33295850.0 -0.13
BXA12/PgnJ m 22555078.0 0.0   1   0.0 0.0 22555078.0, 22555078.0 -1.85
BXA13/PgnJ m 36498340.0 0.0   1   0.0 0.0 36498340.0, 36498340.0 0.38
BXA14/PgnJ m 34057660.0 0.0   1   0.0 0.0 34057660.0, 34057660.0 -0.01
BXA16/PgnJ m 32868073.0 5437401.0   2   3844823.0 0.165 29023250.0, 36712896.0 -0.2
BXA1/PgnJ m 30837144.0 0.0   1   0.0 0.0 30837144.0, 30837144.0 -0.53
BXA24/PgnJ m 43947400.0 0.0   1   0.0 0.0 43947400.0, 43947400.0 1.58
BXA25/PgnJ m 28353946.0 0.0   1   0.0 0.0 28353946.0, 28353946.0 -0.93
BXA26/PgnJ m 38477900.0 0.0   1   0.0 0.0 38477900.0, 38477900.0 0.7
BXA2/PgnJ m 31447534.0 0.0   1   0.0 0.0 31447534.0, 31447534.0 -0.43
BXA4/PgnJ m 24981346.0 0.0   1   0.0 0.0 24981346.0, 24981346.0 -1.47
BXA7/PgnJ m 37191064.0 0.0   1   0.0 0.0 37191064.0, 37191064.0 0.49
BXA8/PgnJ m 29450660.0 0.0   1   0.0 0.0 29450660.0, 29450660.0 -0.75
BXD11/TyJ m 32365368.0 0.0   1   0.0 0.0 32365368.0, 32365368.0 -0.28
BXD12/TyJ m 43627880.0 0.0   1   0.0 0.0 43627880.0, 43627880.0 1.52
BXD13/TyJ m 31062278.0 0.0   1   0.0 0.0 31062278.0, 31062278.0 -0.49
BXD14/TyJ m 37494272.0 0.0   1   0.0 0.0 37494272.0, 37494272.0 0.54
BXD15/TyJ m 43580020.0 0.0   1   0.0 0.0 43580020.0, 43580020.0 1.52
BXD18/TyJ m 32914142.0 0.0   1   0.0 0.0 32914142.0, 32914142.0 -0.19
BXD19/TyJ m 32296138.0 5130838.0   2   3628050.0 0.159 28668088.0, 35924188.0 -0.29
BXD1/TyJ m 32666506.0 0.0   1   0.0 0.0 32666506.0, 32666506.0 -0.23
BXD20/TyJ m 33867540.0 0.0   1   0.0 0.0 33867540.0, 33867540.0 -0.04
BXD21/TyJ m 26834772.0 0.0   1   0.0 0.0 26834772.0, 26834772.0 -1.17
BXD22/TyJ m 40014000.0 0.0   1   0.0 0.0 40014000.0, 40014000.0 0.94
BXD24/TyJ m 25598324.0 0.0   1   0.0 0.0 25598324.0, 25598324.0 -1.37
BXD24/TyJ-Cep290rd16/J m 29770332.0 0.0   1   0.0 0.0 29770332.0, 29770332.0 -0.7
BXD28/TyJ m 32418135.0 4145870.0   2   2931573.0 0.128 29486562.0, 35349708.0 -0.27
BXD29-Tlr4lps-2J/J m 42401288.0 0.0   1   0.0 0.0 42401288.0, 42401288.0 1.33
BXD2/TyJ m 40742008.0 0.0   1   0.0 0.0 40742008.0, 40742008.0 1.06
BXD32/TyJ m 45202352.0 0.0   1   0.0 0.0 45202352.0, 45202352.0 1.78
BXD33/TyJ m 40417472.0 0.0   1   0.0 0.0 40417472.0, 40417472.0 1.01
BXD34/TyJ m 32788498.0 0.0   1   0.0 0.0 32788498.0, 32788498.0 -0.21
BXD36/TyJ m 30873762.0 0.0   1   0.0 0.0 30873762.0, 30873762.0 -0.52
BXD38/TyJ m 37933508.0 0.0   1   0.0 0.0 37933508.0, 37933508.0 0.61
BXD39/TyJ m 32968080.0 0.0   1   0.0 0.0 32968080.0, 32968080.0 -0.19
BXD40/TyJ m 51712696.0 0.0   1   0.0 0.0 51712696.0, 51712696.0 2.82
BXD42/TyJ m 24797946.0 0.0   1   0.0 0.0 24797946.0, 24797946.0 -1.5
BXD5/TyJ m 31350932.0 0.0   1   0.0 0.0 31350932.0, 31350932.0 -0.44
BXD6/TyJ m 31619924.0 0.0   1   0.0 0.0 31619924.0, 31619924.0 -0.4
BXD8/TyJ m 28937258.0 0.0   1   0.0 0.0 28937258.0, 28937258.0 -0.83
BXD9/TyJ m 33676976.0 0.0   1   0.0 0.0 33676976.0, 33676976.0 -0.07
BXH10/TyJ m 22384110.0 0.0   1   0.0 0.0 22384110.0, 22384110.0 -1.88
BXH19/TyJ m 25311558.0 0.0   1   0.0 0.0 25311558.0, 25311558.0 -1.41
BXH20/KccJ m 45664868.0 0.0   1   0.0 0.0 45664868.0, 45664868.0 1.85
BXH22/KccJ m 36464164.0 0.0   1   0.0 0.0 36464164.0, 36464164.0 0.38
BXH2/TyJ m 29613668.0 0.0   1   0.0 0.0 29613668.0, 29613668.0 -0.72
BXH4/TyJ m 36429407.0 4236527.0   2   2995677.0 0.116 33433730.0, 39425084.0 0.37
BXH6/TyJ m 34873032.0 0.0   1   0.0 0.0 34873032.0, 34873032.0 0.12
BXH7/TyJ m 30888156.0 0.0   1   0.0 0.0 30888156.0, 30888156.0 -0.52
BXH8/TyJ m 34248224.0 0.0   1   0.0 0.0 34248224.0, 34248224.0 0.02
BXH9/TyJ m 30098282.0 0.0   1   0.0 0.0 30098282.0, 30098282.0 -0.65
C3H/HeJ m 33172243.0 2715693.0   2   1920285.0 0.0819 31251958.0, 35092528.0 -0.15
C57BL/6J m 44670711.0 4173612.0   5 1866496.0 0.0934 39148884.0, 50804700.0 1.69
C57L/J m 22483194.0 0.0   1   0.0 0.0 22483194.0, 22483194.0 -1.87
C58/J m 38995912.0 0.0   1   0.0 0.0 38995912.0, 38995912.0 0.78
CAST/EiJ m 27283158.0 0.0   1   0.0 0.0 27283158.0, 27283158.0 -1.1
CBA/J m 28911598.0 0.0   1   0.0 0.0 28911598.0, 28911598.0 -0.84
CE/J m 32320040.0 0.0   1   0.0 0.0 32320040.0, 32320040.0 -0.29
CXB11/HiAJ m 33738188.0 905640.0   2   640384.0 0.0268 33097804.0, 34378572.0 -0.06
CXB12/HiAJ m 38023840.0 2661375.0   2   1881876.0 0.07 36141964.0, 39905716.0 0.63
CXB13/HiAJ m 43144545.0 4064451.0   3 2346612.0 0.0942 39921624.0, 47710552.0 1.45
CXB1/ByJ m 32002952.0 1833528.0   3 1058588.0 0.0573 29976274.0, 33546628.0 -0.34
CXB2/ByJ m 38348349.0 4058838.0   3 2343371.0 0.106 34491468.0, 42582764.0 0.68
CXB3/ByJ m 37799402.0 3242732.0   2   2292958.0 0.0858 35506444.0, 40092360.0 0.59
CXB4/ByJ m 32890905.0 6051034.0   2   4278727.0 0.184 28612178.0, 37169632.0 -0.2
CXB6/ByJ m 37398295.0 8251564.0   3 4764043.0 0.221 31009034.0, 46714308.0 0.53
CXB7/ByJ m 38342310.0 2017090.0   2   1426298.0 0.0526 36916012.0, 39768608.0 0.68
CXB8/HiAJ m 43582724.0 3396881.0   3 1961190.0 0.0779 39832924.0, 46454144.0 1.52
CXB9/HiAJ m 37445083.0 4501383.0   3 2598875.0 0.12 34736856.0, 42641276.0 0.53
DBA/2J m 28579237.0 1167918.0   4 583959.0 0.0409 27399340.0, 29989036.0 -0.89
FVB/NJ m 29062866.0 0.0   1   0.0 0.0 29062866.0, 29062866.0 -0.81
I/LnJ m 31754934.0 0.0   1   0.0 0.0 31754934.0, 31754934.0 -0.38
KK/HlJ m 29721770.0 0.0   1   0.0 0.0 29721770.0, 29721770.0 -0.71
LG/J m 31660352.0 0.0   1   0.0 0.0 31660352.0, 31660352.0 -0.39
LP/J m 27684738.0 0.0   1   0.0 0.0 27684738.0, 27684738.0 -1.03
MA/MyJ m 31397590.0 0.0   1   0.0 0.0 31397590.0, 31397590.0 -0.44
NOD/ShiLtJ m 31981146.0 0.0   1   0.0 0.0 31981146.0, 31981146.0 -0.34
NON/ShiLtJ m 27583804.0 0.0   1   0.0 0.0 27583804.0, 27583804.0 -1.05
NZW/LacJ m 28388994.0 0.0   1   0.0 0.0 28388994.0, 28388994.0 -0.92
PL/J m 42075396.0 0.0   1   0.0 0.0 42075396.0, 42075396.0 1.27
RIIIS/J m 30908876.0 0.0   1   0.0 0.0 30908876.0, 30908876.0 -0.52
SEA/GnJ m 43405068.0 0.0   1   0.0 0.0 43405068.0, 43405068.0 1.49
SJL/J m 25452824.0 0.0   1   0.0 0.0 25452824.0, 25452824.0 -1.39
SM/J m 37492976.0 0.0   1   0.0 0.0 37492976.0, 37492976.0 0.54
SWR/J m 31751104.0 0.0   1   0.0 0.0 31751104.0, 31751104.0 -0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 28250049.0 3022570.5874 34392651.4803 22107446.5197
AXB19b/PgnJ m 53589752.0 3022570.5874 59732354.4803 47447149.5197
AXB24/PgnJ m 24292298.0 3022570.5874 30434900.4803 18149695.5197
BALB/cJ m 37891205.3333 2467918.5502 42906619.2565 32875791.4102
BXA16/PgnJ m 32868073.0 3022570.5874 39010675.4803 26725470.5197
BXD19/TyJ m 32296138.0 3022570.5874 38438740.4803 26153535.5197
BXD28/TyJ m 32418135.0 3022570.5874 38560737.4803 26275532.5197
BXH4/TyJ m 36429407.0 3022570.5874 42572009.4803 30286804.5197
C3H/HeJ m 33172243.0 3022570.5874 39314845.4803 27029640.5197
C57BL/6J m 44670711.2 1911641.489 48555634.1197 40785788.2803
CXB11/HiAJ m 33738188.0 3022570.5874 39880790.4803 27595585.5197
CXB12/HiAJ m 38023840.0 3022570.5874 44166442.4803 31881237.5197
CXB13/HiAJ m 43144545.3333 2467918.5502 48159959.2565 38129131.4102
CXB1/ByJ m 32002952.0 2467918.5502 37018365.9231 26987538.0769
CXB2/ByJ m 38348349.3333 2467918.5502 43363763.2565 33332935.4102
CXB3/ByJ m 37799402.0 3022570.5874 43942004.4803 31656799.5197
CXB4/ByJ m 32890905.0 3022570.5874 39033507.4803 26748302.5197
CXB6/ByJ m 37398295.3333 2467918.5502 42413709.2565 32382881.4102
CXB7/ByJ m 38342310.0 3022570.5874 44484912.4803 32199707.5197
CXB8/HiAJ m 43582724.0 2467918.5502 48598137.9231 38567310.0769
CXB9/HiAJ m 37445082.6667 2467918.5502 42460496.5898 32429668.7435
DBA/2J m 28579237.0 2137280.159 32922712.8679 24235761.1321




  GWAS USING LINEAR MIXED MODELS