Project measure / variable:   HMDPpheno6   ophthalmate

ID, description, units MPD:50125   ophthalmate   liver ophthalmate (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver ophthalmate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1069426   None
Median of the strain means825448   None
SD of the strain means± 1038850
Coefficient of variation (CV)0.971
Min–max range of strain means104624   –   6828728   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 56792567906753.6 2704407995559.7 8.4283 < 0.0001
Residuals 34 10909677163191.6 320872857740.931


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 850196.0 0.0   1   0.0 0.0 850196.0, 850196.0 -0.21
A/J m 1538743.0 859138.0   2   607503.0 0.558 931241.0, 2146246.0 0.45
AKR/J m 2761756.0 0.0   1   0.0 0.0 2761756.0, 2761756.0 1.63
AXB10/PgnJ m 295671.0 0.0   1   0.0 0.0 295671.0, 295671.0 -0.74
AXB12/PgnJ m 2242437.0 0.0   1   0.0 0.0 2242437.0, 2242437.0 1.13
AXB13/PgnJ m 917843.0 0.0   1   0.0 0.0 917843.0, 917843.0 -0.15
AXB15/PgnJ m 1717042.0 0.0   1   0.0 0.0 1717042.0, 1717042.0 0.62
AXB19a/PgnJ m 361547.0 0.0   1   0.0 0.0 361547.0, 361547.0 -0.68
AXB19b/PgnJ m 826241.0 41211.0   2   29141.0 0.0499 797100.0, 855382.0 -0.23
AXB19/PgnJ m 429200.0 0.0   1   0.0 0.0 429200.0, 429200.0 -0.62
AXB1/PgnJ m 3509702.0 0.0   1   0.0 0.0 3509702.0, 3509702.0 2.35
AXB23/PgnJ m 655410.0 0.0   1   0.0 0.0 655410.0, 655410.0 -0.4
AXB24/PgnJ m 1319763.0 675301.0   2   477510.0 0.512 842253.0, 1797273.0 0.24
AXB2/PgnJ m 3260444.0 0.0   1   0.0 0.0 3260444.0, 3260444.0 2.11
AXB4/PgnJ m 2179895.0 0.0   1   0.0 0.0 2179895.0, 2179895.0 1.07
AXB5/PgnJ m 2389140.0 0.0   1   0.0 0.0 2389140.0, 2389140.0 1.27
AXB6/PgnJ m 1253045.0 0.0   1   0.0 0.0 1253045.0, 1253045.0 0.18
AXB8/PgnJ m 1637868.0 0.0   1   0.0 0.0 1637868.0, 1637868.0 0.55
BALB/cJ m 880877.0 247513.0   3 142902.0 0.281 693633.0, 1161494.0 -0.18
BTBR T+ Itpr3tf/J m 235176.0 0.0   1   0.0 0.0 235176.0, 235176.0 -0.8
BUB/BnJ m 2431918.0 0.0   1   0.0 0.0 2431918.0, 2431918.0 1.31
BXA11/PgnJ m 1148911.0 0.0   1   0.0 0.0 1148911.0, 1148911.0 0.08
BXA12/PgnJ m 2314798.0 0.0   1   0.0 0.0 2314798.0, 2314798.0 1.2
BXA13/PgnJ m 843451.0 0.0   1   0.0 0.0 843451.0, 843451.0 -0.22
BXA14/PgnJ m 396615.0 0.0   1   0.0 0.0 396615.0, 396615.0 -0.65
BXA16/PgnJ m 525065.0 562354.0   2   397644.0 1.07 127421.0, 922709.0 -0.52
BXA1/PgnJ m 484398.0 0.0   1   0.0 0.0 484398.0, 484398.0 -0.56
BXA24/PgnJ m 2353908.0 0.0   1   0.0 0.0 2353908.0, 2353908.0 1.24
BXA25/PgnJ m 788700.0 0.0   1   0.0 0.0 788700.0, 788700.0 -0.27
BXA26/PgnJ m 3652486.0 0.0   1   0.0 0.0 3652486.0, 3652486.0 2.49
BXA2/PgnJ m 1062397.0 0.0   1   0.0 0.0 1062397.0, 1062397.0 -0.01
BXA4/PgnJ m 1022603.0 0.0   1   0.0 0.0 1022603.0, 1022603.0 -0.05
BXA7/PgnJ m 1111789.0 0.0   1   0.0 0.0 1111789.0, 1111789.0 0.04
BXA8/PgnJ m 525857.0 0.0   1   0.0 0.0 525857.0, 525857.0 -0.52
BXD11/TyJ m 1346302.0 0.0   1   0.0 0.0 1346302.0, 1346302.0 0.27
BXD12/TyJ m 318205.0 0.0   1   0.0 0.0 318205.0, 318205.0 -0.72
BXD13/TyJ m 621569.0 0.0   1   0.0 0.0 621569.0, 621569.0 -0.43
BXD14/TyJ m 324059.0 0.0   1   0.0 0.0 324059.0, 324059.0 -0.72
BXD15/TyJ m 973824.0 0.0   1   0.0 0.0 973824.0, 973824.0 -0.09
BXD18/TyJ m 1114670.0 0.0   1   0.0 0.0 1114670.0, 1114670.0 0.04
BXD19/TyJ m 487490.0 193699.0   2   136966.0 0.397 350524.0, 624456.0 -0.56
BXD1/TyJ m 140208.0 0.0   1   0.0 0.0 140208.0, 140208.0 -0.89
BXD20/TyJ m 1963270.0 0.0   1   0.0 0.0 1963270.0, 1963270.0 0.86
BXD21/TyJ m 140077.0 0.0   1   0.0 0.0 140077.0, 140077.0 -0.89
BXD22/TyJ m 391480.0 0.0   1   0.0 0.0 391480.0, 391480.0 -0.65
BXD24/TyJ m 1338577.0 0.0   1   0.0 0.0 1338577.0, 1338577.0 0.26
BXD24/TyJ-Cep290rd16/J m 588638.0 0.0   1   0.0 0.0 588638.0, 588638.0 -0.46
BXD28/TyJ m 928918.0 304699.0   2   215455.0 0.328 713463.0, 1144373.0 -0.14
BXD29-Tlr4lps-2J/J m 533979.0 0.0   1   0.0 0.0 533979.0, 533979.0 -0.52
BXD2/TyJ m 440314.0 0.0   1   0.0 0.0 440314.0, 440314.0 -0.61
BXD32/TyJ m 1179556.0 0.0   1   0.0 0.0 1179556.0, 1179556.0 0.11
BXD33/TyJ m 1055630.0 0.0   1   0.0 0.0 1055630.0, 1055630.0 -0.01
BXD34/TyJ m 1158490.0 0.0   1   0.0 0.0 1158490.0, 1158490.0 0.09
BXD36/TyJ m 542571.0 0.0   1   0.0 0.0 542571.0, 542571.0 -0.51
BXD38/TyJ m 314598.0 0.0   1   0.0 0.0 314598.0, 314598.0 -0.73
BXD39/TyJ m 104624.0 0.0   1   0.0 0.0 104624.0, 104624.0 -0.93
BXD40/TyJ m 292186.0 0.0   1   0.0 0.0 292186.0, 292186.0 -0.75
BXD42/TyJ m 173152.0 0.0   1   0.0 0.0 173152.0, 173152.0 -0.86
BXD5/TyJ m 543082.0 0.0   1   0.0 0.0 543082.0, 543082.0 -0.51
BXD6/TyJ m 603471.0 0.0   1   0.0 0.0 603471.0, 603471.0 -0.45
BXD8/TyJ m 362783.0 0.0   1   0.0 0.0 362783.0, 362783.0 -0.68
BXD9/TyJ m 206310.0 0.0   1   0.0 0.0 206310.0, 206310.0 -0.83
BXH10/TyJ m 443839.0 0.0   1   0.0 0.0 443839.0, 443839.0 -0.6
BXH19/TyJ m 856475.0 0.0   1   0.0 0.0 856475.0, 856475.0 -0.2
BXH20/KccJ m 285996.0 0.0   1   0.0 0.0 285996.0, 285996.0 -0.75
BXH22/KccJ m 219074.0 0.0   1   0.0 0.0 219074.0, 219074.0 -0.82
BXH2/TyJ m 734873.0 0.0   1   0.0 0.0 734873.0, 734873.0 -0.32
BXH4/TyJ m 223694.0 51669.0   2   36536.0 0.231 187158.0, 260230.0 -0.81
BXH6/TyJ m 1046091.0 0.0   1   0.0 0.0 1046091.0, 1046091.0 -0.02
BXH7/TyJ m 435139.0 0.0   1   0.0 0.0 435139.0, 435139.0 -0.61
BXH8/TyJ m 955956.0 0.0   1   0.0 0.0 955956.0, 955956.0 -0.11
BXH9/TyJ m 669449.0 0.0   1   0.0 0.0 669449.0, 669449.0 -0.39
C3H/HeJ m 824656.0 802310.0   2   567319.0 0.973 257337.0, 1391974.0 -0.24
C57BL/6J m 2262139.0 1154194.0   5 516171.0 0.51 1016095.0, 3856272.0 1.15
C57L/J m 989239.0 0.0   1   0.0 0.0 989239.0, 989239.0 -0.08
C58/J m 2152768.0 0.0   1   0.0 0.0 2152768.0, 2152768.0 1.04
CAST/EiJ m 337417.0 0.0   1   0.0 0.0 337417.0, 337417.0 -0.7
CBA/J m 773260.0 0.0   1   0.0 0.0 773260.0, 773260.0 -0.29
CE/J m 519815.0 0.0   1   0.0 0.0 519815.0, 519815.0 -0.53
CXB11/HiAJ m 169582.0 54638.0   2   38635.0 0.322 130947.0, 208217.0 -0.87
CXB12/HiAJ m 1655042.0 398858.0   2   282035.0 0.241 1373006.0, 1937076.0 0.56
CXB13/HiAJ m 1137602.0 646437.0   3 373221.0 0.568 392736.0, 1552017.0 0.07
CXB1/ByJ m 448097.0 396715.0   3 229044.0 0.885 118379.0, 888360.0 -0.6
CXB2/ByJ m 1217628.0 442644.0   3 255561.0 0.364 957941.0, 1728727.0 0.14
CXB3/ByJ m 831303.0 468549.0   2   331314.0 0.564 499988.0, 1162617.0 -0.23
CXB4/ByJ m 297510.0 49078.0   2   34704.0 0.165 262806.0, 332214.0 -0.74
CXB6/ByJ m 4677895.0 469663.0   3 271160.0 0.1 4144093.0, 5027710.0 3.47
CXB7/ByJ m 899012.0 719215.0   2   508561.0 0.8 390451.0, 1407574.0 -0.16
CXB8/HiAJ m 643076.0 285689.0   3 164943.0 0.444 314618.0, 833853.0 -0.41
CXB9/HiAJ m 958739.0 216994.0   3 125281.0 0.226 714933.0, 1130695.0 -0.11
DBA/2J m 405734.0 95595.0   4 47797.0 0.236 351605.0, 548963.0 -0.64
FVB/NJ m 3751308.0 0.0   1   0.0 0.0 3751308.0, 3751308.0 2.58
I/LnJ m 980436.0 0.0   1   0.0 0.0 980436.0, 980436.0 -0.09
KK/HlJ m 188288.0 0.0   1   0.0 0.0 188288.0, 188288.0 -0.85
LG/J m 133849.0 0.0   1   0.0 0.0 133849.0, 133849.0 -0.9
LP/J m 341763.0 0.0   1   0.0 0.0 341763.0, 341763.0 -0.7
MA/MyJ m 6828728.0 0.0   1   0.0 0.0 6828728.0, 6828728.0 5.54
NOD/ShiLtJ m 1371159.0 0.0   1   0.0 0.0 1371159.0, 1371159.0 0.29
NON/ShiLtJ m 1914871.0 0.0   1   0.0 0.0 1914871.0, 1914871.0 0.81
NZW/LacJ m 631099.0 0.0   1   0.0 0.0 631099.0, 631099.0 -0.42
PL/J m 700111.0 0.0   1   0.0 0.0 700111.0, 700111.0 -0.36
RIIIS/J m 275194.0 0.0   1   0.0 0.0 275194.0, 275194.0 -0.76
SEA/GnJ m 1015094.0 0.0   1   0.0 0.0 1015094.0, 1015094.0 -0.05
SJL/J m 775571.0 0.0   1   0.0 0.0 775571.0, 775571.0 -0.28
SM/J m 213525.0 0.0   1   0.0 0.0 213525.0, 213525.0 -0.82
SWR/J m 1054112.0 0.0   1   0.0 0.0 1054112.0, 1054112.0 -0.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1538743.4 400545.1646 2352749.1115 724737.6885
AXB19b/PgnJ m 826241.0 400545.1646 1640246.7115 12235.2885
AXB24/PgnJ m 1319763.35 400545.1646 2133769.0615 505757.6385
BALB/cJ m 880876.5667 327043.7574 1545509.4469 216243.6864
BXA16/PgnJ m 525065.35 400545.1646 1339071.0615 0.0
BXD19/TyJ m 487489.7 400545.1646 1301495.4115 0.0
BXD28/TyJ m 928918.2 400545.1646 1742923.9115 114912.4885
BXH4/TyJ m 223694.15 400545.1646 1037699.8615 0.0
C3H/HeJ m 824655.55 400545.1646 1638661.2615 10649.8385
C57BL/6J m 2262139.22 253327.0052 2776961.6353 1747316.8047
CXB11/HiAJ m 169581.95 400545.1646 983587.6615 0.0
CXB12/HiAJ m 1655041.5 400545.1646 2469047.2115 841035.7885
CXB13/HiAJ m 1137601.5667 327043.7574 1802234.4469 472968.6864
CXB1/ByJ m 448097.2 327043.7574 1112730.0803 0.0
CXB2/ByJ m 1217627.5 327043.7574 1882260.3803 552994.6197
CXB3/ByJ m 831302.7 400545.1646 1645308.4115 17296.9885
CXB4/ByJ m 297510.05 400545.1646 1111515.7615 0.0
CXB6/ByJ m 4677894.7667 327043.7574 5342527.6469 4013261.8864
CXB7/ByJ m 899012.4 400545.1646 1713018.1115 85006.6885
CXB8/HiAJ m 643076.0 327043.7574 1307708.8803 0.0
CXB9/HiAJ m 958739.1 327043.7574 1623371.9803 294106.2197
DBA/2J m 405733.925 283228.202 981322.8835 0.0




  GWAS USING LINEAR MIXED MODELS