Project measure / variable:   HMDPpheno6   SAH

ID, description, units MPD:50116   SAH   liver S-adenosylhomocysteine (SAH) (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver S-adenosylhomocysteine (SAH) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means39824   None
Median of the strain means39820   None
SD of the strain means± 8329
Coefficient of variation (CV)0.209
Min–max range of strain means21593   –   61279   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 4132694321.9004 196794967.7095 2.1494 0.0228
Residuals 34 3113042906.918 91560085.4976


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 38326.0 0.0   1   0.0 0.0 38326.0, 38326.0 -0.18
A/J m 37990.0 3308.0   2   2339.0 0.0871 35651.0, 40330.0 -0.22
AKR/J m 31252.0 0.0   1   0.0 0.0 31252.0, 31252.0 -1.03
AXB10/PgnJ m 48124.0 0.0   1   0.0 0.0 48124.0, 48124.0 1.0
AXB12/PgnJ m 24846.0 0.0   1   0.0 0.0 24846.0, 24846.0 -1.8
AXB13/PgnJ m 49132.0 0.0   1   0.0 0.0 49132.0, 49132.0 1.12
AXB15/PgnJ m 35845.0 0.0   1   0.0 0.0 35845.0, 35845.0 -0.48
AXB19a/PgnJ m 50278.0 0.0   1   0.0 0.0 50278.0, 50278.0 1.26
AXB19b/PgnJ m 46262.0 2448.0   2   1731.0 0.0529 44532.0, 47993.0 0.77
AXB19/PgnJ m 51784.0 0.0   1   0.0 0.0 51784.0, 51784.0 1.44
AXB1/PgnJ m 42953.0 0.0   1   0.0 0.0 42953.0, 42953.0 0.38
AXB23/PgnJ m 28416.0 0.0   1   0.0 0.0 28416.0, 28416.0 -1.37
AXB24/PgnJ m 34825.0 7757.0   2   5485.0 0.223 29340.0, 40310.0 -0.6
AXB2/PgnJ m 46406.0 0.0   1   0.0 0.0 46406.0, 46406.0 0.79
AXB4/PgnJ m 53180.0 0.0   1   0.0 0.0 53180.0, 53180.0 1.6
AXB5/PgnJ m 38970.0 0.0   1   0.0 0.0 38970.0, 38970.0 -0.1
AXB6/PgnJ m 39487.0 0.0   1   0.0 0.0 39487.0, 39487.0 -0.04
AXB8/PgnJ m 45181.0 0.0   1   0.0 0.0 45181.0, 45181.0 0.64
BALB/cJ m 38370.0 6247.0   3 3606.0 0.163 31250.0, 42930.0 -0.17
BTBR T+ Itpr3tf/J m 31342.0 0.0   1   0.0 0.0 31342.0, 31342.0 -1.02
BUB/BnJ m 29219.0 0.0   1   0.0 0.0 29219.0, 29219.0 -1.27
BXA11/PgnJ m 30010.0 0.0   1   0.0 0.0 30010.0, 30010.0 -1.18
BXA12/PgnJ m 30399.0 0.0   1   0.0 0.0 30399.0, 30399.0 -1.13
BXA13/PgnJ m 45255.0 0.0   1   0.0 0.0 45255.0, 45255.0 0.65
BXA14/PgnJ m 42835.0 0.0   1   0.0 0.0 42835.0, 42835.0 0.36
BXA16/PgnJ m 40036.0 6044.0   2   4273.0 0.151 35762.0, 44309.0 0.03
BXA1/PgnJ m 31603.0 0.0   1   0.0 0.0 31603.0, 31603.0 -0.99
BXA24/PgnJ m 43480.0 0.0   1   0.0 0.0 43480.0, 43480.0 0.44
BXA25/PgnJ m 26142.0 0.0   1   0.0 0.0 26142.0, 26142.0 -1.64
BXA26/PgnJ m 42369.0 0.0   1   0.0 0.0 42369.0, 42369.0 0.31
BXA2/PgnJ m 39559.0 0.0   1   0.0 0.0 39559.0, 39559.0 -0.03
BXA4/PgnJ m 21593.0 0.0   1   0.0 0.0 21593.0, 21593.0 -2.19
BXA7/PgnJ m 36342.0 0.0   1   0.0 0.0 36342.0, 36342.0 -0.42
BXA8/PgnJ m 52701.0 0.0   1   0.0 0.0 52701.0, 52701.0 1.55
BXD11/TyJ m 40204.0 0.0   1   0.0 0.0 40204.0, 40204.0 0.05
BXD12/TyJ m 30739.0 0.0   1   0.0 0.0 30739.0, 30739.0 -1.09
BXD13/TyJ m 36757.0 0.0   1   0.0 0.0 36757.0, 36757.0 -0.37
BXD14/TyJ m 53117.0 0.0   1   0.0 0.0 53117.0, 53117.0 1.6
BXD15/TyJ m 30798.0 0.0   1   0.0 0.0 30798.0, 30798.0 -1.08
BXD18/TyJ m 30629.0 0.0   1   0.0 0.0 30629.0, 30629.0 -1.1
BXD19/TyJ m 48288.0 11404.0   2   8064.0 0.236 40223.0, 56352.0 1.02
BXD1/TyJ m 46279.0 0.0   1   0.0 0.0 46279.0, 46279.0 0.77
BXD20/TyJ m 39603.0 0.0   1   0.0 0.0 39603.0, 39603.0 -0.03
BXD21/TyJ m 26956.0 0.0   1   0.0 0.0 26956.0, 26956.0 -1.55
BXD22/TyJ m 35379.0 0.0   1   0.0 0.0 35379.0, 35379.0 -0.53
BXD24/TyJ m 30231.0 0.0   1   0.0 0.0 30231.0, 30231.0 -1.15
BXD24/TyJ-Cep290rd16/J m 32003.0 0.0   1   0.0 0.0 32003.0, 32003.0 -0.94
BXD28/TyJ m 36015.0 732.0   2   518.0 0.0203 35497.0, 36532.0 -0.46
BXD29-Tlr4lps-2J/J m 35183.0 0.0   1   0.0 0.0 35183.0, 35183.0 -0.56
BXD2/TyJ m 45206.0 0.0   1   0.0 0.0 45206.0, 45206.0 0.65
BXD32/TyJ m 44506.0 0.0   1   0.0 0.0 44506.0, 44506.0 0.56
BXD33/TyJ m 34915.0 0.0   1   0.0 0.0 34915.0, 34915.0 -0.59
BXD34/TyJ m 41482.0 0.0   1   0.0 0.0 41482.0, 41482.0 0.2
BXD36/TyJ m 47017.0 0.0   1   0.0 0.0 47017.0, 47017.0 0.86
BXD38/TyJ m 33925.0 0.0   1   0.0 0.0 33925.0, 33925.0 -0.71
BXD39/TyJ m 44726.0 0.0   1   0.0 0.0 44726.0, 44726.0 0.59
BXD40/TyJ m 54018.0 0.0   1   0.0 0.0 54018.0, 54018.0 1.7
BXD42/TyJ m 36971.0 0.0   1   0.0 0.0 36971.0, 36971.0 -0.34
BXD5/TyJ m 43048.0 0.0   1   0.0 0.0 43048.0, 43048.0 0.39
BXD6/TyJ m 41047.0 0.0   1   0.0 0.0 41047.0, 41047.0 0.15
BXD8/TyJ m 22950.0 0.0   1   0.0 0.0 22950.0, 22950.0 -2.03
BXD9/TyJ m 36705.0 0.0   1   0.0 0.0 36705.0, 36705.0 -0.37
BXH10/TyJ m 42905.0 0.0   1   0.0 0.0 42905.0, 42905.0 0.37
BXH19/TyJ m 46218.0 0.0   1   0.0 0.0 46218.0, 46218.0 0.77
BXH20/KccJ m 33601.0 0.0   1   0.0 0.0 33601.0, 33601.0 -0.75
BXH22/KccJ m 36741.0 0.0   1   0.0 0.0 36741.0, 36741.0 -0.37
BXH2/TyJ m 30596.0 0.0   1   0.0 0.0 30596.0, 30596.0 -1.11
BXH4/TyJ m 48248.0 1538.0   2   1088.0 0.0319 47160.0, 49335.0 1.01
BXH6/TyJ m 56603.0 0.0   1   0.0 0.0 56603.0, 56603.0 2.01
BXH7/TyJ m 41762.0 0.0   1   0.0 0.0 41762.0, 41762.0 0.23
BXH8/TyJ m 43481.0 0.0   1   0.0 0.0 43481.0, 43481.0 0.44
BXH9/TyJ m 30918.0 0.0   1   0.0 0.0 30918.0, 30918.0 -1.07
C3H/HeJ m 53219.0 656.0   2   464.0 0.0123 52755.0, 53683.0 1.61
C57BL/6J m 50633.0 11392.0   5 5095.0 0.225 40735.0, 65189.0 1.3
C57L/J m 41944.0 0.0   1   0.0 0.0 41944.0, 41944.0 0.25
C58/J m 41473.0 0.0   1   0.0 0.0 41473.0, 41473.0 0.2
CAST/EiJ m 33110.0 0.0   1   0.0 0.0 33110.0, 33110.0 -0.81
CBA/J m 51965.0 0.0   1   0.0 0.0 51965.0, 51965.0 1.46
CE/J m 35384.0 0.0   1   0.0 0.0 35384.0, 35384.0 -0.53
CXB11/HiAJ m 41007.0 6236.0   2   4410.0 0.152 36597.0, 45417.0 0.14
CXB12/HiAJ m 34811.0 7454.0   2   5270.0 0.214 29540.0, 40081.0 -0.6
CXB13/HiAJ m 41907.0 16863.0   3 9736.0 0.402 28560.0, 60859.0 0.25
CXB1/ByJ m 54496.0 18669.0   3 10778.0 0.343 42632.0, 76015.0 1.76
CXB2/ByJ m 56085.0 10584.0   3 6111.0 0.189 48486.0, 68174.0 1.95
CXB3/ByJ m 27797.0 4941.0   2   3494.0 0.178 24304.0, 31291.0 -1.44
CXB4/ByJ m 49259.0 5807.0   2   4106.0 0.118 45152.0, 53365.0 1.13
CXB6/ByJ m 33397.0 11621.0   3 6710.0 0.348 24820.0, 46623.0 -0.77
CXB7/ByJ m 31294.0 1788.0   2   1264.0 0.0571 30030.0, 32558.0 -1.02
CXB8/HiAJ m 40884.0 12298.0   3 7100.0 0.301 27354.0, 51384.0 0.13
CXB9/HiAJ m 27860.0 4504.0   3 2601.0 0.162 22831.0, 31524.0 -1.44
DBA/2J m 32709.0 1828.0   4 914.0 0.0559 30007.0, 34027.0 -0.85
FVB/NJ m 30141.0 0.0   1   0.0 0.0 30141.0, 30141.0 -1.16
I/LnJ m 42031.0 0.0   1   0.0 0.0 42031.0, 42031.0 0.26
KK/HlJ m 61279.0 0.0   1   0.0 0.0 61279.0, 61279.0 2.58
LG/J m 44263.0 0.0   1   0.0 0.0 44263.0, 44263.0 0.53
LP/J m 31728.0 0.0   1   0.0 0.0 31728.0, 31728.0 -0.97
MA/MyJ m 53913.0 0.0   1   0.0 0.0 53913.0, 53913.0 1.69
NOD/ShiLtJ m 36470.0 0.0   1   0.0 0.0 36470.0, 36470.0 -0.4
NON/ShiLtJ m 40453.0 0.0   1   0.0 0.0 40453.0, 40453.0 0.08
NZW/LacJ m 39030.0 0.0   1   0.0 0.0 39030.0, 39030.0 -0.1
PL/J m 44141.0 0.0   1   0.0 0.0 44141.0, 44141.0 0.52
RIIIS/J m 31749.0 0.0   1   0.0 0.0 31749.0, 31749.0 -0.97
SEA/GnJ m 41418.0 0.0   1   0.0 0.0 41418.0, 41418.0 0.19
SJL/J m 50143.0 0.0   1   0.0 0.0 50143.0, 50143.0 1.24
SM/J m 36953.0 0.0   1   0.0 0.0 36953.0, 36953.0 -0.34
SWR/J m 44161.0 0.0   1   0.0 0.0 44161.0, 44161.0 0.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 37990.5 6766.0951 51740.8596 24240.1404
AXB19b/PgnJ m 46262.5 6766.0951 60012.8596 32512.1404
AXB24/PgnJ m 34825.15 6766.0951 48575.5096 21074.7904
BALB/cJ m 38370.3333 5524.4935 49597.4549 27143.2117
BXA16/PgnJ m 40035.55 6766.0951 53785.9096 26285.1904
BXD19/TyJ m 48287.55 6766.0951 62037.9096 34537.1904
BXD28/TyJ m 36014.95 6766.0951 49765.3096 22264.5904
BXH4/TyJ m 48247.7 6766.0951 61998.0596 34497.3404
C3H/HeJ m 53219.15 6766.0951 66969.5096 39468.7904
C57BL/6J m 50632.88 4279.2543 59329.371 41936.389
CXB11/HiAJ m 41007.15 6766.0951 54757.5096 27256.7904
CXB12/HiAJ m 34810.65 6766.0951 48561.0096 21060.2904
CXB13/HiAJ m 41906.9 5524.4935 53134.0216 30679.7784
CXB1/ByJ m 54495.7333 5524.4935 65722.8549 43268.6117
CXB2/ByJ m 56084.5333 5524.4935 67311.6549 44857.4117
CXB3/ByJ m 27797.35 6766.0951 41547.7096 14046.9904
CXB4/ByJ m 49258.75 6766.0951 63009.1096 35508.3904
CXB6/ByJ m 33397.0667 5524.4935 44624.1883 22169.9451
CXB7/ByJ m 31293.65 6766.0951 45044.0096 17543.2904
CXB8/HiAJ m 40884.3667 5524.4935 52111.4883 29657.2451
CXB9/HiAJ m 27859.6333 5524.4935 39086.7549 16632.5117
DBA/2J m 32708.7 4784.3517 42431.6725 22985.7275




  GWAS USING LINEAR MIXED MODELS