Project measure / variable:   HMDPpheno6   taurine

ID, description, units MPD:50114   taurine   liver taurine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver taurine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1261930   None
Median of the strain means1261984   None
SD of the strain means± 268939
Coefficient of variation (CV)0.213
Min–max range of strain means472048   –   1999898   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 3261863791874.06 155326847232.098 3.5955 0.0005
Residuals 34 1468798680429.96 43199961189.1163


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1107419.0 0.0   1   0.0 0.0 1107419.0, 1107419.0 -0.57
A/J m 1342374.0 150561.0   2   106462.0 0.112 1235912.0, 1448837.0 0.3
AKR/J m 986368.0 0.0   1   0.0 0.0 986368.0, 986368.0 -1.02
AXB10/PgnJ m 1172015.0 0.0   1   0.0 0.0 1172015.0, 1172015.0 -0.33
AXB12/PgnJ m 1316950.0 0.0   1   0.0 0.0 1316950.0, 1316950.0 0.2
AXB13/PgnJ m 1192280.0 0.0   1   0.0 0.0 1192280.0, 1192280.0 -0.26
AXB15/PgnJ m 1300815.0 0.0   1   0.0 0.0 1300815.0, 1300815.0 0.14
AXB19a/PgnJ m 1451884.0 0.0   1   0.0 0.0 1451884.0, 1451884.0 0.71
AXB19b/PgnJ m 1252588.0 325783.0   2   230363.0 0.26 1022225.0, 1482952.0 -0.03
AXB19/PgnJ m 1333523.0 0.0   1   0.0 0.0 1333523.0, 1333523.0 0.27
AXB1/PgnJ m 1360310.0 0.0   1   0.0 0.0 1360310.0, 1360310.0 0.37
AXB23/PgnJ m 1376430.0 0.0   1   0.0 0.0 1376430.0, 1376430.0 0.43
AXB24/PgnJ m 1601512.0 86543.0   2   61195.0 0.054 1540318.0, 1662707.0 1.26
AXB2/PgnJ m 1293260.0 0.0   1   0.0 0.0 1293260.0, 1293260.0 0.12
AXB4/PgnJ m 1488278.0 0.0   1   0.0 0.0 1488278.0, 1488278.0 0.84
AXB5/PgnJ m 1460214.0 0.0   1   0.0 0.0 1460214.0, 1460214.0 0.74
AXB6/PgnJ m 1181613.0 0.0   1   0.0 0.0 1181613.0, 1181613.0 -0.3
AXB8/PgnJ m 1703821.0 0.0   1   0.0 0.0 1703821.0, 1703821.0 1.64
BALB/cJ m 1060561.0 123908.0   3 71538.0 0.117 925950.0, 1169855.0 -0.75
BTBR T+ Itpr3tf/J m 1428270.0 0.0   1   0.0 0.0 1428270.0, 1428270.0 0.62
BUB/BnJ m 846228.0 0.0   1   0.0 0.0 846228.0, 846228.0 -1.55
BXA11/PgnJ m 1600522.0 0.0   1   0.0 0.0 1600522.0, 1600522.0 1.26
BXA12/PgnJ m 1181176.0 0.0   1   0.0 0.0 1181176.0, 1181176.0 -0.3
BXA13/PgnJ m 1323079.0 0.0   1   0.0 0.0 1323079.0, 1323079.0 0.23
BXA14/PgnJ m 1207070.0 0.0   1   0.0 0.0 1207070.0, 1207070.0 -0.2
BXA16/PgnJ m 1258724.0 345376.0   2   244218.0 0.274 1014506.0, 1502942.0 -0.01
BXA1/PgnJ m 1312666.0 0.0   1   0.0 0.0 1312666.0, 1312666.0 0.19
BXA24/PgnJ m 715230.0 0.0   1   0.0 0.0 715230.0, 715230.0 -2.03
BXA25/PgnJ m 1502994.0 0.0   1   0.0 0.0 1502994.0, 1502994.0 0.9
BXA26/PgnJ m 1109821.0 0.0   1   0.0 0.0 1109821.0, 1109821.0 -0.57
BXA2/PgnJ m 910717.0 0.0   1   0.0 0.0 910717.0, 910717.0 -1.31
BXA4/PgnJ m 1179867.0 0.0   1   0.0 0.0 1179867.0, 1179867.0 -0.31
BXA7/PgnJ m 1251060.0 0.0   1   0.0 0.0 1251060.0, 1251060.0 -0.04
BXA8/PgnJ m 1682424.0 0.0   1   0.0 0.0 1682424.0, 1682424.0 1.56
BXD11/TyJ m 1087183.0 0.0   1   0.0 0.0 1087183.0, 1087183.0 -0.65
BXD12/TyJ m 1251969.0 0.0   1   0.0 0.0 1251969.0, 1251969.0 -0.04
BXD13/TyJ m 1515502.0 0.0   1   0.0 0.0 1515502.0, 1515502.0 0.94
BXD14/TyJ m 1200298.0 0.0   1   0.0 0.0 1200298.0, 1200298.0 -0.23
BXD15/TyJ m 996325.0 0.0   1   0.0 0.0 996325.0, 996325.0 -0.99
BXD18/TyJ m 1327091.0 0.0   1   0.0 0.0 1327091.0, 1327091.0 0.24
BXD19/TyJ m 1296886.0 115199.0   2   81458.0 0.0888 1215428.0, 1378344.0 0.13
BXD1/TyJ m 1605148.0 0.0   1   0.0 0.0 1605148.0, 1605148.0 1.28
BXD20/TyJ m 1528687.0 0.0   1   0.0 0.0 1528687.0, 1528687.0 0.99
BXD21/TyJ m 1257348.0 0.0   1   0.0 0.0 1257348.0, 1257348.0 -0.02
BXD22/TyJ m 1186793.0 0.0   1   0.0 0.0 1186793.0, 1186793.0 -0.28
BXD24/TyJ m 1593198.0 0.0   1   0.0 0.0 1593198.0, 1593198.0 1.23
BXD24/TyJ-Cep290rd16/J m 1520908.0 0.0   1   0.0 0.0 1520908.0, 1520908.0 0.96
BXD28/TyJ m 775354.0 109334.0   2   77311.0 0.141 698044.0, 852665.0 -1.81
BXD29-Tlr4lps-2J/J m 1466920.0 0.0   1   0.0 0.0 1466920.0, 1466920.0 0.76
BXD2/TyJ m 1230534.0 0.0   1   0.0 0.0 1230534.0, 1230534.0 -0.12
BXD32/TyJ m 987526.0 0.0   1   0.0 0.0 987526.0, 987526.0 -1.02
BXD33/TyJ m 859554.0 0.0   1   0.0 0.0 859554.0, 859554.0 -1.5
BXD34/TyJ m 1055186.0 0.0   1   0.0 0.0 1055186.0, 1055186.0 -0.77
BXD36/TyJ m 1175435.0 0.0   1   0.0 0.0 1175435.0, 1175435.0 -0.32
BXD38/TyJ m 1744404.0 0.0   1   0.0 0.0 1744404.0, 1744404.0 1.79
BXD39/TyJ m 1452002.0 0.0   1   0.0 0.0 1452002.0, 1452002.0 0.71
BXD40/TyJ m 1157124.0 0.0   1   0.0 0.0 1157124.0, 1157124.0 -0.39
BXD42/TyJ m 1999898.0 0.0   1   0.0 0.0 1999898.0, 1999898.0 2.74
BXD5/TyJ m 1592803.0 0.0   1   0.0 0.0 1592803.0, 1592803.0 1.23
BXD6/TyJ m 1344536.0 0.0   1   0.0 0.0 1344536.0, 1344536.0 0.31
BXD8/TyJ m 1600491.0 0.0   1   0.0 0.0 1600491.0, 1600491.0 1.26
BXD9/TyJ m 1539846.0 0.0   1   0.0 0.0 1539846.0, 1539846.0 1.03
BXH10/TyJ m 1724912.0 0.0   1   0.0 0.0 1724912.0, 1724912.0 1.72
BXH19/TyJ m 1452566.0 0.0   1   0.0 0.0 1452566.0, 1452566.0 0.71
BXH20/KccJ m 903633.0 0.0   1   0.0 0.0 903633.0, 903633.0 -1.33
BXH22/KccJ m 1580745.0 0.0   1   0.0 0.0 1580745.0, 1580745.0 1.19
BXH2/TyJ m 996318.0 0.0   1   0.0 0.0 996318.0, 996318.0 -0.99
BXH4/TyJ m 1299106.0 37693.0   2   26653.0 0.029 1272453.0, 1325759.0 0.14
BXH6/TyJ m 1025155.0 0.0   1   0.0 0.0 1025155.0, 1025155.0 -0.88
BXH7/TyJ m 1330138.0 0.0   1   0.0 0.0 1330138.0, 1330138.0 0.25
BXH8/TyJ m 1115281.0 0.0   1   0.0 0.0 1115281.0, 1115281.0 -0.55
BXH9/TyJ m 1532569.0 0.0   1   0.0 0.0 1532569.0, 1532569.0 1.01
C3H/HeJ m 1364595.0 368052.0   2   260252.0 0.27 1104343.0, 1624846.0 0.38
C57BL/6J m 1263661.0 300853.0   5 134546.0 0.238 939116.0, 1588156.0 0.01
C57L/J m 1327562.0 0.0   1   0.0 0.0 1327562.0, 1327562.0 0.24
C58/J m 747496.0 0.0   1   0.0 0.0 747496.0, 747496.0 -1.91
CAST/EiJ m 1294988.0 0.0   1   0.0 0.0 1294988.0, 1294988.0 0.12
CBA/J m 1585945.0 0.0   1   0.0 0.0 1585945.0, 1585945.0 1.2
CE/J m 1105430.0 0.0   1   0.0 0.0 1105430.0, 1105430.0 -0.58
CXB11/HiAJ m 1784541.0 339626.0   2   240152.0 0.19 1544389.0, 2024693.0 1.94
CXB12/HiAJ m 833326.0 14591.0   2   10318.0 0.0175 823009.0, 843644.0 -1.59
CXB13/HiAJ m 1246811.0 211718.0   3 122235.0 0.17 1105633.0, 1490247.0 -0.06
CXB1/ByJ m 1209229.0 65181.0   3 37633.0 0.0539 1158440.0, 1282728.0 -0.2
CXB2/ByJ m 973888.0 210917.0   3 121773.0 0.217 730432.0, 1101347.0 -1.07
CXB3/ByJ m 1202267.0 24493.0   2   17319.0 0.0204 1184948.0, 1219586.0 -0.22
CXB4/ByJ m 1000453.0 1637.0   2   1157.0 0.00164 999295.0, 1001610.0 -0.97
CXB6/ByJ m 1260308.0 134255.0   3 77512.0 0.107 1125710.0, 1394218.0 -0.01
CXB7/ByJ m 785240.0 8278.0   2   5854.0 0.0105 779387.0, 791094.0 -1.77
CXB8/HiAJ m 835589.0 188994.0   3 109116.0 0.226 710620.0, 1053011.0 -1.59
CXB9/HiAJ m 1004748.0 328614.0   3 189725.0 0.327 809383.0, 1384142.0 -0.96
DBA/2J m 1474569.0 102548.0   4 51274.0 0.0695 1346265.0, 1596927.0 0.79
FVB/NJ m 1148102.0 0.0   1   0.0 0.0 1148102.0, 1148102.0 -0.42
I/LnJ m 1337138.0 0.0   1   0.0 0.0 1337138.0, 1337138.0 0.28
KK/HlJ m 1419903.0 0.0   1   0.0 0.0 1419903.0, 1419903.0 0.59
LG/J m 1606822.0 0.0   1   0.0 0.0 1606822.0, 1606822.0 1.28
LP/J m 1302933.0 0.0   1   0.0 0.0 1302933.0, 1302933.0 0.15
MA/MyJ m 1111597.0 0.0   1   0.0 0.0 1111597.0, 1111597.0 -0.56
NOD/ShiLtJ m 984999.0 0.0   1   0.0 0.0 984999.0, 984999.0 -1.03
NON/ShiLtJ m 472048.0 0.0   1   0.0 0.0 472048.0, 472048.0 -2.94
NZW/LacJ m 1366785.0 0.0   1   0.0 0.0 1366785.0, 1366785.0 0.39
PL/J m 1211032.0 0.0   1   0.0 0.0 1211032.0, 1211032.0 -0.19
RIIIS/J m 1661712.0 0.0   1   0.0 0.0 1661712.0, 1661712.0 1.49
SEA/GnJ m 1266471.0 0.0   1   0.0 0.0 1266471.0, 1266471.0 0.02
SJL/J m 1037458.0 0.0   1   0.0 0.0 1037458.0, 1037458.0 -0.83
SM/J m 772582.0 0.0   1   0.0 0.0 772582.0, 772582.0 -1.82
SWR/J m 962943.0 0.0   1   0.0 0.0 962943.0, 962943.0 -1.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1342374.5 146969.3185 1641052.0907 1043696.9093
AXB19b/PgnJ m 1252588.35 146969.3185 1551265.9407 953910.7593
AXB24/PgnJ m 1601512.4 146969.3185 1900189.9907 1302834.8093
BALB/cJ m 1060561.0333 119999.9461 1304430.2649 816691.8018
BXA16/PgnJ m 1258723.75 146969.3185 1557401.3407 960046.1593
BXD19/TyJ m 1296885.6 146969.3185 1595563.1907 998208.0093
BXD28/TyJ m 775354.35 146969.3185 1074031.9407 476676.7593
BXH4/TyJ m 1299106.4 146969.3185 1597783.9907 1000428.8093
C3H/HeJ m 1364594.6 146969.3185 1663272.1907 1065917.0093
C57BL/6J m 1263660.78 92951.5586 1452561.0745 1074760.4855
CXB11/HiAJ m 1784540.9 146969.3185 2083218.4907 1485863.3093
CXB12/HiAJ m 833326.3 146969.3185 1132003.8907 534648.7093
CXB13/HiAJ m 1246811.4 119999.9461 1490680.6316 1002942.1684
CXB1/ByJ m 1209229.4667 119999.9461 1453098.6982 965360.2351
CXB2/ByJ m 973887.7667 119999.9461 1217756.9982 730018.5351
CXB3/ByJ m 1202266.95 146969.3185 1500944.5407 903589.3593
CXB4/ByJ m 1000452.8 146969.3185 1299130.3907 701775.2093
CXB6/ByJ m 1260308.0333 119999.9461 1504177.2649 1016438.8018
CXB7/ByJ m 785240.5 146969.3185 1083918.0907 486562.9093
CXB8/HiAJ m 835588.5333 119999.9461 1079457.7649 591719.3018
CXB9/HiAJ m 1004747.6667 119999.9461 1248616.8982 760878.4351
DBA/2J m 1474569.425 103923.0018 1685766.3747 1263372.4753




  GWAS USING LINEAR MIXED MODELS