Project measure / variable:   HMDPpheno6   Met_sulf

ID, description, units MPD:50113   Met_sulf   liver methionine sulfoxide (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   104 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver methionine sulfoxide (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested104 strains
Mean of the strain means191399   None
Median of the strain means165237   None
SD of the strain means± 108591
Coefficient of variation (CV)0.567
Min–max range of strain means55786   –   764965   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 186579257612.825 8884726552.9917 2.1118 0.0254
Residuals 34 143046344186.344 4207245417.2454


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 165396.0 0.0   1   0.0 0.0 165396.0, 165396.0 -0.24
A/J m 165078.0 53202.0   2   37619.0 0.322 127459.0, 202697.0 -0.24
AKR/J m 264330.0 0.0   1   0.0 0.0 264330.0, 264330.0 0.67
AXB10/PgnJ m 233898.0 0.0   1   0.0 0.0 233898.0, 233898.0 0.39
AXB12/PgnJ m 131453.0 0.0   1   0.0 0.0 131453.0, 131453.0 -0.55
AXB13/PgnJ m 161960.0 0.0   1   0.0 0.0 161960.0, 161960.0 -0.27
AXB15/PgnJ m 261299.0 0.0   1   0.0 0.0 261299.0, 261299.0 0.64
AXB19a/PgnJ m 162782.0 0.0   1   0.0 0.0 162782.0, 162782.0 -0.26
AXB19b/PgnJ m 89231.0 19089.0   2   13498.0 0.214 75732.0, 102729.0 -0.94
AXB19/PgnJ m 145975.0 0.0   1   0.0 0.0 145975.0, 145975.0 -0.42
AXB23/PgnJ m 145980.0 0.0   1   0.0 0.0 145980.0, 145980.0 -0.42
AXB24/PgnJ m 182796.0 32694.0   2   23118.0 0.179 159678.0, 205915.0 -0.08
AXB2/PgnJ m 95875.0 0.0   1   0.0 0.0 95875.0, 95875.0 -0.88
AXB4/PgnJ m 228064.0 0.0   1   0.0 0.0 228064.0, 228064.0 0.34
AXB5/PgnJ m 78413.0 0.0   1   0.0 0.0 78413.0, 78413.0 -1.04
AXB6/PgnJ m 67886.0 0.0   1   0.0 0.0 67886.0, 67886.0 -1.14
AXB8/PgnJ m 167574.0 0.0   1   0.0 0.0 167574.0, 167574.0 -0.22
BALB/cJ m 218483.0 115442.0   3 66650.0 0.528 122310.0, 346506.0 0.25
BTBR T+ Itpr3tf/J m 157225.0 0.0   1   0.0 0.0 157225.0, 157225.0 -0.31
BUB/BnJ m 183036.0 0.0   1   0.0 0.0 183036.0, 183036.0 -0.08
BXA11/PgnJ m 289283.0 0.0   1   0.0 0.0 289283.0, 289283.0 0.9
BXA12/PgnJ m 257370.0 0.0   1   0.0 0.0 257370.0, 257370.0 0.61
BXA13/PgnJ m 75408.0 0.0   1   0.0 0.0 75408.0, 75408.0 -1.07
BXA14/PgnJ m 96122.0 0.0   1   0.0 0.0 96122.0, 96122.0 -0.88
BXA16/PgnJ m 256940.0 37685.0   2   26647.0 0.147 230292.0, 283587.0 0.6
BXA1/PgnJ m 240901.0 0.0   1   0.0 0.0 240901.0, 240901.0 0.46
BXA24/PgnJ m 116286.0 0.0   1   0.0 0.0 116286.0, 116286.0 -0.69
BXA25/PgnJ m 261932.0 0.0   1   0.0 0.0 261932.0, 261932.0 0.65
BXA26/PgnJ m 119535.0 0.0   1   0.0 0.0 119535.0, 119535.0 -0.66
BXA2/PgnJ m 210837.0 0.0   1   0.0 0.0 210837.0, 210837.0 0.18
BXA4/PgnJ m 553049.0 0.0   1   0.0 0.0 553049.0, 553049.0 3.33
BXA7/PgnJ m 148018.0 0.0   1   0.0 0.0 148018.0, 148018.0 -0.4
BXA8/PgnJ m 127823.0 0.0   1   0.0 0.0 127823.0, 127823.0 -0.59
BXD11/TyJ m 97515.0 0.0   1   0.0 0.0 97515.0, 97515.0 -0.86
BXD12/TyJ m 70862.0 0.0   1   0.0 0.0 70862.0, 70862.0 -1.11
BXD13/TyJ m 263240.0 0.0   1   0.0 0.0 263240.0, 263240.0 0.66
BXD14/TyJ m 151899.0 0.0   1   0.0 0.0 151899.0, 151899.0 -0.36
BXD15/TyJ m 554632.0 0.0   1   0.0 0.0 554632.0, 554632.0 3.34
BXD18/TyJ m 127797.0 0.0   1   0.0 0.0 127797.0, 127797.0 -0.59
BXD19/TyJ m 149697.0 8634.0   2   6105.0 0.0577 143592.0, 155803.0 -0.38
BXD1/TyJ m 100013.0 0.0   1   0.0 0.0 100013.0, 100013.0 -0.84
BXD20/TyJ m 150159.0 0.0   1   0.0 0.0 150159.0, 150159.0 -0.38
BXD21/TyJ m 183740.0 0.0   1   0.0 0.0 183740.0, 183740.0 -0.07
BXD22/TyJ m 166662.0 0.0   1   0.0 0.0 166662.0, 166662.0 -0.23
BXD24/TyJ m 183154.0 0.0   1   0.0 0.0 183154.0, 183154.0 -0.08
BXD24/TyJ-Cep290rd16/J m 313376.0 0.0   1   0.0 0.0 313376.0, 313376.0 1.12
BXD28/TyJ m 198697.0 53760.0   2   38014.0 0.271 160682.0, 236711.0 0.07
BXD29-Tlr4lps-2J/J m 119350.0 0.0   1   0.0 0.0 119350.0, 119350.0 -0.66
BXD2/TyJ m 270890.0 0.0   1   0.0 0.0 270890.0, 270890.0 0.73
BXD32/TyJ m 237608.0 0.0   1   0.0 0.0 237608.0, 237608.0 0.43
BXD33/TyJ m 109160.0 0.0   1   0.0 0.0 109160.0, 109160.0 -0.76
BXD34/TyJ m 91497.0 0.0   1   0.0 0.0 91497.0, 91497.0 -0.92
BXD36/TyJ m 403468.0 0.0   1   0.0 0.0 403468.0, 403468.0 1.95
BXD38/TyJ m 152771.0 0.0   1   0.0 0.0 152771.0, 152771.0 -0.36
BXD39/TyJ m 213541.0 0.0   1   0.0 0.0 213541.0, 213541.0 0.2
BXD40/TyJ m 165443.0 0.0   1   0.0 0.0 165443.0, 165443.0 -0.24
BXD42/TyJ m 84497.0 0.0   1   0.0 0.0 84497.0, 84497.0 -0.98
BXD5/TyJ m 118658.0 0.0   1   0.0 0.0 118658.0, 118658.0 -0.67
BXD6/TyJ m 191567.0 0.0   1   0.0 0.0 191567.0, 191567.0 0.0
BXD8/TyJ m 205768.0 0.0   1   0.0 0.0 205768.0, 205768.0 0.13
BXD9/TyJ m 182046.0 0.0   1   0.0 0.0 182046.0, 182046.0 -0.09
BXH10/TyJ m 61726.0 0.0   1   0.0 0.0 61726.0, 61726.0 -1.19
BXH19/TyJ m 164722.0 0.0   1   0.0 0.0 164722.0, 164722.0 -0.25
BXH20/KccJ m 245853.0 0.0   1   0.0 0.0 245853.0, 245853.0 0.5
BXH22/KccJ m 117244.0 0.0   1   0.0 0.0 117244.0, 117244.0 -0.68
BXH2/TyJ m 148935.0 0.0   1   0.0 0.0 148935.0, 148935.0 -0.39
BXH4/TyJ m 118470.0 47841.0   2   33828.0 0.404 84641.0, 152298.0 -0.67
BXH6/TyJ m 210514.0 0.0   1   0.0 0.0 210514.0, 210514.0 0.18
BXH7/TyJ m 113024.0 0.0   1   0.0 0.0 113024.0, 113024.0 -0.72
BXH8/TyJ m 316165.0 0.0   1   0.0 0.0 316165.0, 316165.0 1.15
BXH9/TyJ m 764965.0 0.0   1   0.0 0.0 764965.0, 764965.0 5.28
C3H/HeJ m 181752.0 2241.0   2   1585.0 0.0123 180167.0, 183336.0 -0.09
C57BL/6J m 150307.0 70163.0   5 31378.0 0.467 66554.0, 246186.0 -0.38
C57L/J m 196584.0 0.0   1   0.0 0.0 196584.0, 196584.0 0.05
C58/J m 90240.0 0.0   1   0.0 0.0 90240.0, 90240.0 -0.93
CAST/EiJ m 68303.0 0.0   1   0.0 0.0 68303.0, 68303.0 -1.13
CBA/J m 122017.0 0.0   1   0.0 0.0 122017.0, 122017.0 -0.64
CE/J m 393228.0 0.0   1   0.0 0.0 393228.0, 393228.0 1.86
CXB11/HiAJ m 257552.0 116939.0   2   82688.0 0.454 174864.0, 340240.0 0.61
CXB12/HiAJ m 235692.0 95132.0   2   67269.0 0.404 168423.0, 302960.0 0.41
CXB13/HiAJ m 193886.0 87496.0   3 50516.0 0.451 138948.0, 294785.0 0.02
CXB1/ByJ m 130479.0 80640.0   3 46558.0 0.618 68126.0, 221547.0 -0.56
CXB2/ByJ m 224159.0 87933.0   3 50768.0 0.392 146140.0, 319444.0 0.3
CXB3/ByJ m 332950.0 53361.0   2   37732.0 0.16 295218.0, 370681.0 1.3
CXB4/ByJ m 304036.0 47997.0   2   33939.0 0.158 270096.0, 337975.0 1.04
CXB6/ByJ m 106007.0 18591.0   3 10733.0 0.175 91689.0, 127018.0 -0.79
CXB7/ByJ m 136169.0 35146.0   2   24852.0 0.258 111317.0, 161021.0 -0.51
CXB8/HiAJ m 146899.0 19993.0   3 11543.0 0.136 125280.0, 164722.0 -0.41
CXB9/HiAJ m 145570.0 25006.0   3 14437.0 0.172 120978.0, 170970.0 -0.42
DBA/2J m 207292.0 58095.0   4 29048.0 0.28 148096.0, 265022.0 0.15
FVB/NJ m 105477.0 0.0   1   0.0 0.0 105477.0, 105477.0 -0.79
I/LnJ m 103852.0 0.0   1   0.0 0.0 103852.0, 103852.0 -0.81
KK/HlJ m 135118.0 0.0   1   0.0 0.0 135118.0, 135118.0 -0.52
LG/J m 350329.0 0.0   1   0.0 0.0 350329.0, 350329.0 1.46
LP/J m 376602.0 0.0   1   0.0 0.0 376602.0, 376602.0 1.71
MA/MyJ m 129106.0 0.0   1   0.0 0.0 129106.0, 129106.0 -0.57
NOD/ShiLtJ m 196267.0 0.0   1   0.0 0.0 196267.0, 196267.0 0.04
NON/ShiLtJ m 224696.0 0.0   1   0.0 0.0 224696.0, 224696.0 0.31
NZW/LacJ m 171528.0 0.0   1   0.0 0.0 171528.0, 171528.0 -0.18
PL/J m 151055.0 0.0   1   0.0 0.0 151055.0, 151055.0 -0.37
RIIIS/J m 291749.0 0.0   1   0.0 0.0 291749.0, 291749.0 0.92
SEA/GnJ m 90481.0 0.0   1   0.0 0.0 90481.0, 90481.0 -0.93
SM/J m 55786.0 0.0   1   0.0 0.0 55786.0, 55786.0 -1.25
SWR/J m 320724.0 0.0   1   0.0 0.0 320724.0, 320724.0 1.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 165077.85 45865.2669 258287.2868 71868.4132
AXB19b/PgnJ m 89230.8 45865.2669 182440.2368 0.0
AXB24/PgnJ m 182796.45 45865.2669 276005.8868 89587.0132
BALB/cJ m 218483.1667 37448.8336 294588.3532 142377.9802
BXA16/PgnJ m 256939.65 45865.2669 350149.0868 163730.2132
BXD19/TyJ m 149697.45 45865.2669 242906.8868 56488.0132
BXD28/TyJ m 198696.55 45865.2669 291905.9868 105487.1132
BXH4/TyJ m 118469.7 45865.2669 211679.1368 25260.2632
C3H/HeJ m 181751.55 45865.2669 274960.9868 88542.1132
C57BL/6J m 150307.46 29007.7418 209258.284 91356.636
CXB11/HiAJ m 257551.75 45865.2669 350761.1868 164342.3132
CXB12/HiAJ m 235691.75 45865.2669 328901.1868 142482.3132
CXB13/HiAJ m 193885.9 37448.8336 269991.0865 117780.7135
CXB1/ByJ m 130479.1 37448.8336 206584.2865 54373.9135
CXB2/ByJ m 224159.0333 37448.8336 300264.2198 148053.8468
CXB3/ByJ m 332949.5 45865.2669 426158.9368 239740.0632
CXB4/ByJ m 304035.5 45865.2669 397244.9368 210826.0632
CXB6/ByJ m 106007.3667 37448.8336 182112.5532 29902.1802
CXB7/ByJ m 136169.25 45865.2669 229378.6868 42959.8132
CXB8/HiAJ m 146899.4333 37448.8336 223004.6198 70794.2468
CXB9/HiAJ m 145570.4 37448.8336 221675.5865 69465.2135
DBA/2J m 207292.5 32431.6413 273201.5249 141383.4751




  GWAS USING LINEAR MIXED MODELS