Project measure / variable:   HMDPpheno6   Met

ID, description, units MPD:50112   Met   liver methionine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means7005919   None
Median of the strain means6903985   None
SD of the strain means± 1431535
Coefficient of variation (CV)0.204
Min–max range of strain means3430080   –   12884118   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 108621677512629.0 5172460833934.72 10.617 < 0.0001
Residuals 34 16564277665527.2 487184637221.388


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 7171354.0 0.0   1   0.0 0.0 7171354.0, 7171354.0 0.12
A/J m 6041398.0 372126.0   2   263133.0 0.0616 5778265.0, 6304531.0 -0.67
AKR/J m 5382208.0 0.0   1   0.0 0.0 5382208.0, 5382208.0 -1.13
AXB10/PgnJ m 6653196.0 0.0   1   0.0 0.0 6653196.0, 6653196.0 -0.25
AXB12/PgnJ m 5795182.0 0.0   1   0.0 0.0 5795182.0, 5795182.0 -0.85
AXB13/PgnJ m 7034238.0 0.0   1   0.0 0.0 7034238.0, 7034238.0 0.02
AXB15/PgnJ m 6837143.0 0.0   1   0.0 0.0 6837143.0, 6837143.0 -0.12
AXB19a/PgnJ m 7381573.0 0.0   1   0.0 0.0 7381573.0, 7381573.0 0.26
AXB19b/PgnJ m 10795869.0 1332353.0   2   942116.0 0.123 9853753.0, 11737985.0 2.65
AXB19/PgnJ m 8976396.0 0.0   1   0.0 0.0 8976396.0, 8976396.0 1.38
AXB1/PgnJ m 8019024.0 0.0   1   0.0 0.0 8019024.0, 8019024.0 0.71
AXB23/PgnJ m 6831610.0 0.0   1   0.0 0.0 6831610.0, 6831610.0 -0.12
AXB24/PgnJ m 5179951.0 968242.0   2   684651.0 0.187 4495300.0, 5864602.0 -1.28
AXB2/PgnJ m 6162932.0 0.0   1   0.0 0.0 6162932.0, 6162932.0 -0.59
AXB4/PgnJ m 8931601.0 0.0   1   0.0 0.0 8931601.0, 8931601.0 1.35
AXB5/PgnJ m 4718253.0 0.0   1   0.0 0.0 4718253.0, 4718253.0 -1.6
AXB6/PgnJ m 7549000.0 0.0   1   0.0 0.0 7549000.0, 7549000.0 0.38
AXB8/PgnJ m 7163334.0 0.0   1   0.0 0.0 7163334.0, 7163334.0 0.11
BALB/cJ m 6944061.0 425814.0   3 245844.0 0.0613 6507910.0, 7358724.0 -0.04
BTBR T+ Itpr3tf/J m 5188940.0 0.0   1   0.0 0.0 5188940.0, 5188940.0 -1.27
BUB/BnJ m 9861473.0 0.0   1   0.0 0.0 9861473.0, 9861473.0 1.99
BXA11/PgnJ m 6109570.0 0.0   1   0.0 0.0 6109570.0, 6109570.0 -0.63
BXA12/PgnJ m 3430080.0 0.0   1   0.0 0.0 3430080.0, 3430080.0 -2.5
BXA13/PgnJ m 7607326.0 0.0   1   0.0 0.0 7607326.0, 7607326.0 0.42
BXA14/PgnJ m 8533997.0 0.0   1   0.0 0.0 8533997.0, 8533997.0 1.07
BXA16/PgnJ m 6531090.0 151574.0   2   107179.0 0.0232 6423911.0, 6638268.0 -0.33
BXA1/PgnJ m 7513545.0 0.0   1   0.0 0.0 7513545.0, 7513545.0 0.35
BXA24/PgnJ m 9705798.0 0.0   1   0.0 0.0 9705798.0, 9705798.0 1.89
BXA25/PgnJ m 5578979.0 0.0   1   0.0 0.0 5578979.0, 5578979.0 -1.0
BXA26/PgnJ m 7866146.0 0.0   1   0.0 0.0 7866146.0, 7866146.0 0.6
BXA2/PgnJ m 7518685.0 0.0   1   0.0 0.0 7518685.0, 7518685.0 0.36
BXA4/PgnJ m 3476972.0 0.0   1   0.0 0.0 3476972.0, 3476972.0 -2.47
BXA7/PgnJ m 8251606.0 0.0   1   0.0 0.0 8251606.0, 8251606.0 0.87
BXA8/PgnJ m 5833782.0 0.0   1   0.0 0.0 5833782.0, 5833782.0 -0.82
BXD11/TyJ m 6226349.0 0.0   1   0.0 0.0 6226349.0, 6226349.0 -0.54
BXD12/TyJ m 9097103.0 0.0   1   0.0 0.0 9097103.0, 9097103.0 1.46
BXD13/TyJ m 6979050.0 0.0   1   0.0 0.0 6979050.0, 6979050.0 -0.02
BXD14/TyJ m 7269678.0 0.0   1   0.0 0.0 7269678.0, 7269678.0 0.18
BXD15/TyJ m 5918322.0 0.0   1   0.0 0.0 5918322.0, 5918322.0 -0.76
BXD18/TyJ m 5734792.0 0.0   1   0.0 0.0 5734792.0, 5734792.0 -0.89
BXD19/TyJ m 5938050.0 318231.0   2   225024.0 0.0536 5713026.0, 6163073.0 -0.75
BXD1/TyJ m 6367782.0 0.0   1   0.0 0.0 6367782.0, 6367782.0 -0.45
BXD20/TyJ m 6910362.0 0.0   1   0.0 0.0 6910362.0, 6910362.0 -0.07
BXD21/TyJ m 4966374.0 0.0   1   0.0 0.0 4966374.0, 4966374.0 -1.42
BXD22/TyJ m 8406483.0 0.0   1   0.0 0.0 8406483.0, 8406483.0 0.98
BXD24/TyJ m 6559422.0 0.0   1   0.0 0.0 6559422.0, 6559422.0 -0.31
BXD24/TyJ-Cep290rd16/J m 6122234.0 0.0   1   0.0 0.0 6122234.0, 6122234.0 -0.62
BXD28/TyJ m 6721134.0 983487.0   2   695430.0 0.146 6025704.0, 7416565.0 -0.2
BXD29-Tlr4lps-2J/J m 7856015.0 0.0   1   0.0 0.0 7856015.0, 7856015.0 0.59
BXD2/TyJ m 8361054.0 0.0   1   0.0 0.0 8361054.0, 8361054.0 0.95
BXD32/TyJ m 7885624.0 0.0   1   0.0 0.0 7885624.0, 7885624.0 0.61
BXD33/TyJ m 7720158.0 0.0   1   0.0 0.0 7720158.0, 7720158.0 0.5
BXD34/TyJ m 7653560.0 0.0   1   0.0 0.0 7653560.0, 7653560.0 0.45
BXD36/TyJ m 6077600.0 0.0   1   0.0 0.0 6077600.0, 6077600.0 -0.65
BXD38/TyJ m 7082364.0 0.0   1   0.0 0.0 7082364.0, 7082364.0 0.05
BXD39/TyJ m 6889182.0 0.0   1   0.0 0.0 6889182.0, 6889182.0 -0.08
BXD40/TyJ m 6880282.0 0.0   1   0.0 0.0 6880282.0, 6880282.0 -0.09
BXD42/TyJ m 5463852.0 0.0   1   0.0 0.0 5463852.0, 5463852.0 -1.08
BXD5/TyJ m 7613798.0 0.0   1   0.0 0.0 7613798.0, 7613798.0 0.42
BXD6/TyJ m 5912808.0 0.0   1   0.0 0.0 5912808.0, 5912808.0 -0.76
BXD8/TyJ m 4790948.0 0.0   1   0.0 0.0 4790948.0, 4790948.0 -1.55
BXD9/TyJ m 5833917.0 0.0   1   0.0 0.0 5833917.0, 5833917.0 -0.82
BXH10/TyJ m 8246970.0 0.0   1   0.0 0.0 8246970.0, 8246970.0 0.87
BXH19/TyJ m 6257408.0 0.0   1   0.0 0.0 6257408.0, 6257408.0 -0.52
BXH20/KccJ m 7603856.0 0.0   1   0.0 0.0 7603856.0, 7603856.0 0.42
BXH22/KccJ m 8029315.0 0.0   1   0.0 0.0 8029315.0, 8029315.0 0.71
BXH2/TyJ m 7593784.0 0.0   1   0.0 0.0 7593784.0, 7593784.0 0.41
BXH4/TyJ m 6766762.0 799923.0   2   565631.0 0.118 6201131.0, 7332393.0 -0.17
BXH6/TyJ m 9354871.0 0.0   1   0.0 0.0 9354871.0, 9354871.0 1.64
BXH7/TyJ m 6743954.0 0.0   1   0.0 0.0 6743954.0, 6743954.0 -0.18
BXH8/TyJ m 6712044.0 0.0   1   0.0 0.0 6712044.0, 6712044.0 -0.21
BXH9/TyJ m 5378075.0 0.0   1   0.0 0.0 5378075.0, 5378075.0 -1.14
C3H/HeJ m 7308018.0 1118184.0   2   790676.0 0.153 6517342.0, 8098694.0 0.21
C57BL/6J m 9200940.0 672287.0   5 300656.0 0.0731 8716590.0, 10333874.0 1.53
C57L/J m 4391759.0 0.0   1   0.0 0.0 4391759.0, 4391759.0 -1.83
C58/J m 12884118.0 0.0   1   0.0 0.0 12884118.0, 12884118.0 4.11
CAST/EiJ m 6619906.0 0.0   1   0.0 0.0 6619906.0, 6619906.0 -0.27
CBA/J m 6404624.0 0.0   1   0.0 0.0 6404624.0, 6404624.0 -0.42
CE/J m 6563028.0 0.0   1   0.0 0.0 6563028.0, 6563028.0 -0.31
CXB11/HiAJ m 6349202.0 100123.0   2   70798.0 0.0158 6278404.0, 6420000.0 -0.46
CXB12/HiAJ m 8200699.0 146969.0   2   103923.0 0.0179 8096776.0, 8304622.0 0.83
CXB13/HiAJ m 8565125.0 1014679.0   3 585825.0 0.118 7444564.0, 9421765.0 1.09
CXB1/ByJ m 6469249.0 603183.0   3 348248.0 0.0932 6070023.0, 7163124.0 -0.37
CXB2/ByJ m 8339076.0 866327.0   3 500174.0 0.104 7533245.0, 9255314.0 0.93
CXB3/ByJ m 7111754.0 538413.0   2   380716.0 0.0757 6731039.0, 7492470.0 0.07
CXB4/ByJ m 6897608.0 348602.0   2   246499.0 0.0505 6651109.0, 7144106.0 -0.08
CXB6/ByJ m 7472097.0 828601.0   3 478393.0 0.111 6519191.0, 8023095.0 0.33
CXB7/ByJ m 7461507.0 659512.0   2   466346.0 0.0884 6995161.0, 7927852.0 0.32
CXB8/HiAJ m 10035468.0 804418.0   3 464431.0 0.0802 9108982.0, 10556210.0 2.12
CXB9/HiAJ m 7855522.0 450818.0   3 260280.0 0.0574 7515548.0, 8366904.0 0.59
DBA/2J m 5602675.0 327246.0   4 163623.0 0.0584 5244972.0, 5998454.0 -0.98
FVB/NJ m 6345269.0 0.0   1   0.0 0.0 6345269.0, 6345269.0 -0.46
I/LnJ m 7642872.0 0.0   1   0.0 0.0 7642872.0, 7642872.0 0.44
KK/HlJ m 6552452.0 0.0   1   0.0 0.0 6552452.0, 6552452.0 -0.32
LG/J m 5912600.0 0.0   1   0.0 0.0 5912600.0, 5912600.0 -0.76
LP/J m 6153076.0 0.0   1   0.0 0.0 6153076.0, 6153076.0 -0.6
MA/MyJ m 5996646.0 0.0   1   0.0 0.0 5996646.0, 5996646.0 -0.71
NOD/ShiLtJ m 8256636.0 0.0   1   0.0 0.0 8256636.0, 8256636.0 0.87
NON/ShiLtJ m 6949440.0 0.0   1   0.0 0.0 6949440.0, 6949440.0 -0.04
NZW/LacJ m 6130117.0 0.0   1   0.0 0.0 6130117.0, 6130117.0 -0.61
PL/J m 8179551.0 0.0   1   0.0 0.0 8179551.0, 8179551.0 0.82
RIIIS/J m 6052900.0 0.0   1   0.0 0.0 6052900.0, 6052900.0 -0.67
SEA/GnJ m 6980152.0 0.0   1   0.0 0.0 6980152.0, 6980152.0 -0.02
SJL/J m 4857614.0 0.0   1   0.0 0.0 4857614.0, 4857614.0 -1.5
SM/J m 6964448.0 0.0   1   0.0 0.0 6964448.0, 6964448.0 -0.03
SWR/J m 7419661.0 0.0   1   0.0 0.0 7419661.0, 7419661.0 0.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 6041398.0 493550.7255 7044413.7519 5038382.2481
AXB19b/PgnJ m 10795869.0 493550.7255 11798884.7519 9792853.2481
AXB24/PgnJ m 5179950.75 493550.7255 6182966.5019 4176934.9981
BALB/cJ m 6944060.8333 402982.4799 7763019.7654 6125101.9013
BXA16/PgnJ m 6531089.75 493550.7255 7534105.5019 5528073.9981
BXD19/TyJ m 5938049.5 493550.7255 6941065.2519 4935033.7481
BXD28/TyJ m 6721134.5 493550.7255 7724150.2519 5718118.7481
BXH4/TyJ m 6766762.0 493550.7255 7769777.7519 5763746.2481
C3H/HeJ m 7308017.75 493550.7255 8311033.5019 6305001.9981
C57BL/6J m 9200940.0 312148.8867 9835302.861 8566577.139
CXB11/HiAJ m 6349202.5 493550.7255 7352218.2519 5346186.7481
CXB12/HiAJ m 8200699.0 493550.7255 9203714.7519 7197683.2481
CXB13/HiAJ m 8565125.1667 402982.4799 9384084.0987 7746166.2346
CXB1/ByJ m 6469249.3333 402982.4799 7288208.2654 5650290.4013
CXB2/ByJ m 8339075.8333 402982.4799 9158034.7654 7520116.9013
CXB3/ByJ m 7111754.5 493550.7255 8114770.2519 6108738.7481
CXB4/ByJ m 6897607.75 493550.7255 7900623.5019 5894591.9981
CXB6/ByJ m 7472096.8333 402982.4799 8291055.7654 6653137.9013
CXB7/ByJ m 7461506.75 493550.7255 8464522.5019 6458490.9981
CXB8/HiAJ m 10035468.0 402982.4799 10854426.932 9216509.068
CXB9/HiAJ m 7855522.3333 402982.4799 8674481.2654 7036563.4013
DBA/2J m 5602675.0 348993.0648 6311914.2398 4893435.7602




  GWAS USING LINEAR MIXED MODELS

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