Project measure / variable:   HMDPpheno6   Met

ID, description, units MPD:50112   Met   liver methionine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver methionine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means7005919   None
Median of the strain means6903985   None
SD of the strain means± 1431535
Coefficient of variation (CV)0.204
Min–max range of strain means3430080   –   12884118   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 108621677512629.0 5172460833934.72 10.617 < 0.0001
Residuals 34 16564277665527.2 487184637221.388


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 7171354.0 0.0   1   0.0 0.0 7171354.0, 7171354.0 0.12
A/J m 6041398.0 372126.0   2   263133.0 0.0616 5778265.0, 6304531.0 -0.67
AKR/J m 5382208.0 0.0   1   0.0 0.0 5382208.0, 5382208.0 -1.13
AXB10/PgnJ m 6653196.0 0.0   1   0.0 0.0 6653196.0, 6653196.0 -0.25
AXB12/PgnJ m 5795182.0 0.0   1   0.0 0.0 5795182.0, 5795182.0 -0.85
AXB13/PgnJ m 7034238.0 0.0   1   0.0 0.0 7034238.0, 7034238.0 0.02
AXB15/PgnJ m 6837143.0 0.0   1   0.0 0.0 6837143.0, 6837143.0 -0.12
AXB19a/PgnJ m 7381573.0 0.0   1   0.0 0.0 7381573.0, 7381573.0 0.26
AXB19b/PgnJ m 10795869.0 1332353.0   2   942116.0 0.123 9853753.0, 11737985.0 2.65
AXB19/PgnJ m 8976396.0 0.0   1   0.0 0.0 8976396.0, 8976396.0 1.38
AXB1/PgnJ m 8019024.0 0.0   1   0.0 0.0 8019024.0, 8019024.0 0.71
AXB23/PgnJ m 6831610.0 0.0   1   0.0 0.0 6831610.0, 6831610.0 -0.12
AXB24/PgnJ m 5179951.0 968242.0   2   684651.0 0.187 4495300.0, 5864602.0 -1.28
AXB2/PgnJ m 6162932.0 0.0   1   0.0 0.0 6162932.0, 6162932.0 -0.59
AXB4/PgnJ m 8931601.0 0.0   1   0.0 0.0 8931601.0, 8931601.0 1.35
AXB5/PgnJ m 4718253.0 0.0   1   0.0 0.0 4718253.0, 4718253.0 -1.6
AXB6/PgnJ m 7549000.0 0.0   1   0.0 0.0 7549000.0, 7549000.0 0.38
AXB8/PgnJ m 7163334.0 0.0   1   0.0 0.0 7163334.0, 7163334.0 0.11
BALB/cJ m 6944061.0 425814.0   3 245844.0 0.0613 6507910.0, 7358724.0 -0.04
BTBR T+ Itpr3tf/J m 5188940.0 0.0   1   0.0 0.0 5188940.0, 5188940.0 -1.27
BUB/BnJ m 9861473.0 0.0   1   0.0 0.0 9861473.0, 9861473.0 1.99
BXA11/PgnJ m 6109570.0 0.0   1   0.0 0.0 6109570.0, 6109570.0 -0.63
BXA12/PgnJ m 3430080.0 0.0   1   0.0 0.0 3430080.0, 3430080.0 -2.5
BXA13/PgnJ m 7607326.0 0.0   1   0.0 0.0 7607326.0, 7607326.0 0.42
BXA14/PgnJ m 8533997.0 0.0   1   0.0 0.0 8533997.0, 8533997.0 1.07
BXA16/PgnJ m 6531090.0 151574.0   2   107179.0 0.0232 6423911.0, 6638268.0 -0.33
BXA1/PgnJ m 7513545.0 0.0   1   0.0 0.0 7513545.0, 7513545.0 0.35
BXA24/PgnJ m 9705798.0 0.0   1   0.0 0.0 9705798.0, 9705798.0 1.89
BXA25/PgnJ m 5578979.0 0.0   1   0.0 0.0 5578979.0, 5578979.0 -1.0
BXA26/PgnJ m 7866146.0 0.0   1   0.0 0.0 7866146.0, 7866146.0 0.6
BXA2/PgnJ m 7518685.0 0.0   1   0.0 0.0 7518685.0, 7518685.0 0.36
BXA4/PgnJ m 3476972.0 0.0   1   0.0 0.0 3476972.0, 3476972.0 -2.47
BXA7/PgnJ m 8251606.0 0.0   1   0.0 0.0 8251606.0, 8251606.0 0.87
BXA8/PgnJ m 5833782.0 0.0   1   0.0 0.0 5833782.0, 5833782.0 -0.82
BXD11/TyJ m 6226349.0 0.0   1   0.0 0.0 6226349.0, 6226349.0 -0.54
BXD12/TyJ m 9097103.0 0.0   1   0.0 0.0 9097103.0, 9097103.0 1.46
BXD13/TyJ m 6979050.0 0.0   1   0.0 0.0 6979050.0, 6979050.0 -0.02
BXD14/TyJ m 7269678.0 0.0   1   0.0 0.0 7269678.0, 7269678.0 0.18
BXD15/TyJ m 5918322.0 0.0   1   0.0 0.0 5918322.0, 5918322.0 -0.76
BXD18/TyJ m 5734792.0 0.0   1   0.0 0.0 5734792.0, 5734792.0 -0.89
BXD19/TyJ m 5938050.0 318231.0   2   225024.0 0.0536 5713026.0, 6163073.0 -0.75
BXD1/TyJ m 6367782.0 0.0   1   0.0 0.0 6367782.0, 6367782.0 -0.45
BXD20/TyJ m 6910362.0 0.0   1   0.0 0.0 6910362.0, 6910362.0 -0.07
BXD21/TyJ m 4966374.0 0.0   1   0.0 0.0 4966374.0, 4966374.0 -1.42
BXD22/TyJ m 8406483.0 0.0   1   0.0 0.0 8406483.0, 8406483.0 0.98
BXD24/TyJ m 6559422.0 0.0   1   0.0 0.0 6559422.0, 6559422.0 -0.31
BXD24/TyJ-Cep290rd16/J m 6122234.0 0.0   1   0.0 0.0 6122234.0, 6122234.0 -0.62
BXD28/TyJ m 6721134.0 983487.0   2   695430.0 0.146 6025704.0, 7416565.0 -0.2
BXD29-Tlr4lps-2J/J m 7856015.0 0.0   1   0.0 0.0 7856015.0, 7856015.0 0.59
BXD2/TyJ m 8361054.0 0.0   1   0.0 0.0 8361054.0, 8361054.0 0.95
BXD32/TyJ m 7885624.0 0.0   1   0.0 0.0 7885624.0, 7885624.0 0.61
BXD33/TyJ m 7720158.0 0.0   1   0.0 0.0 7720158.0, 7720158.0 0.5
BXD34/TyJ m 7653560.0 0.0   1   0.0 0.0 7653560.0, 7653560.0 0.45
BXD36/TyJ m 6077600.0 0.0   1   0.0 0.0 6077600.0, 6077600.0 -0.65
BXD38/TyJ m 7082364.0 0.0   1   0.0 0.0 7082364.0, 7082364.0 0.05
BXD39/TyJ m 6889182.0 0.0   1   0.0 0.0 6889182.0, 6889182.0 -0.08
BXD40/TyJ m 6880282.0 0.0   1   0.0 0.0 6880282.0, 6880282.0 -0.09
BXD42/TyJ m 5463852.0 0.0   1   0.0 0.0 5463852.0, 5463852.0 -1.08
BXD5/TyJ m 7613798.0 0.0   1   0.0 0.0 7613798.0, 7613798.0 0.42
BXD6/TyJ m 5912808.0 0.0   1   0.0 0.0 5912808.0, 5912808.0 -0.76
BXD8/TyJ m 4790948.0 0.0   1   0.0 0.0 4790948.0, 4790948.0 -1.55
BXD9/TyJ m 5833917.0 0.0   1   0.0 0.0 5833917.0, 5833917.0 -0.82
BXH10/TyJ m 8246970.0 0.0   1   0.0 0.0 8246970.0, 8246970.0 0.87
BXH19/TyJ m 6257408.0 0.0   1   0.0 0.0 6257408.0, 6257408.0 -0.52
BXH20/KccJ m 7603856.0 0.0   1   0.0 0.0 7603856.0, 7603856.0 0.42
BXH22/KccJ m 8029315.0 0.0   1   0.0 0.0 8029315.0, 8029315.0 0.71
BXH2/TyJ m 7593784.0 0.0   1   0.0 0.0 7593784.0, 7593784.0 0.41
BXH4/TyJ m 6766762.0 799923.0   2   565631.0 0.118 6201131.0, 7332393.0 -0.17
BXH6/TyJ m 9354871.0 0.0   1   0.0 0.0 9354871.0, 9354871.0 1.64
BXH7/TyJ m 6743954.0 0.0   1   0.0 0.0 6743954.0, 6743954.0 -0.18
BXH8/TyJ m 6712044.0 0.0   1   0.0 0.0 6712044.0, 6712044.0 -0.21
BXH9/TyJ m 5378075.0 0.0   1   0.0 0.0 5378075.0, 5378075.0 -1.14
C3H/HeJ m 7308018.0 1118184.0   2   790676.0 0.153 6517342.0, 8098694.0 0.21
C57BL/6J m 9200940.0 672287.0   5 300656.0 0.0731 8716590.0, 10333874.0 1.53
C57L/J m 4391759.0 0.0   1   0.0 0.0 4391759.0, 4391759.0 -1.83
C58/J m 12884118.0 0.0   1   0.0 0.0 12884118.0, 12884118.0 4.11
CAST/EiJ m 6619906.0 0.0   1   0.0 0.0 6619906.0, 6619906.0 -0.27
CBA/J m 6404624.0 0.0   1   0.0 0.0 6404624.0, 6404624.0 -0.42
CE/J m 6563028.0 0.0   1   0.0 0.0 6563028.0, 6563028.0 -0.31
CXB11/HiAJ m 6349202.0 100123.0   2   70798.0 0.0158 6278404.0, 6420000.0 -0.46
CXB12/HiAJ m 8200699.0 146969.0   2   103923.0 0.0179 8096776.0, 8304622.0 0.83
CXB13/HiAJ m 8565125.0 1014679.0   3 585825.0 0.118 7444564.0, 9421765.0 1.09
CXB1/ByJ m 6469249.0 603183.0   3 348248.0 0.0932 6070023.0, 7163124.0 -0.37
CXB2/ByJ m 8339076.0 866327.0   3 500174.0 0.104 7533245.0, 9255314.0 0.93
CXB3/ByJ m 7111754.0 538413.0   2   380716.0 0.0757 6731039.0, 7492470.0 0.07
CXB4/ByJ m 6897608.0 348602.0   2   246499.0 0.0505 6651109.0, 7144106.0 -0.08
CXB6/ByJ m 7472097.0 828601.0   3 478393.0 0.111 6519191.0, 8023095.0 0.33
CXB7/ByJ m 7461507.0 659512.0   2   466346.0 0.0884 6995161.0, 7927852.0 0.32
CXB8/HiAJ m 10035468.0 804418.0   3 464431.0 0.0802 9108982.0, 10556210.0 2.12
CXB9/HiAJ m 7855522.0 450818.0   3 260280.0 0.0574 7515548.0, 8366904.0 0.59
DBA/2J m 5602675.0 327246.0   4 163623.0 0.0584 5244972.0, 5998454.0 -0.98
FVB/NJ m 6345269.0 0.0   1   0.0 0.0 6345269.0, 6345269.0 -0.46
I/LnJ m 7642872.0 0.0   1   0.0 0.0 7642872.0, 7642872.0 0.44
KK/HlJ m 6552452.0 0.0   1   0.0 0.0 6552452.0, 6552452.0 -0.32
LG/J m 5912600.0 0.0   1   0.0 0.0 5912600.0, 5912600.0 -0.76
LP/J m 6153076.0 0.0   1   0.0 0.0 6153076.0, 6153076.0 -0.6
MA/MyJ m 5996646.0 0.0   1   0.0 0.0 5996646.0, 5996646.0 -0.71
NOD/ShiLtJ m 8256636.0 0.0   1   0.0 0.0 8256636.0, 8256636.0 0.87
NON/ShiLtJ m 6949440.0 0.0   1   0.0 0.0 6949440.0, 6949440.0 -0.04
NZW/LacJ m 6130117.0 0.0   1   0.0 0.0 6130117.0, 6130117.0 -0.61
PL/J m 8179551.0 0.0   1   0.0 0.0 8179551.0, 8179551.0 0.82
RIIIS/J m 6052900.0 0.0   1   0.0 0.0 6052900.0, 6052900.0 -0.67
SEA/GnJ m 6980152.0 0.0   1   0.0 0.0 6980152.0, 6980152.0 -0.02
SJL/J m 4857614.0 0.0   1   0.0 0.0 4857614.0, 4857614.0 -1.5
SM/J m 6964448.0 0.0   1   0.0 0.0 6964448.0, 6964448.0 -0.03
SWR/J m 7419661.0 0.0   1   0.0 0.0 7419661.0, 7419661.0 0.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 6041398.0 493550.7255 7044413.7519 5038382.2481
AXB19b/PgnJ m 10795869.0 493550.7255 11798884.7519 9792853.2481
AXB24/PgnJ m 5179950.75 493550.7255 6182966.5019 4176934.9981
BALB/cJ m 6944060.8333 402982.4799 7763019.7654 6125101.9013
BXA16/PgnJ m 6531089.75 493550.7255 7534105.5019 5528073.9981
BXD19/TyJ m 5938049.5 493550.7255 6941065.2519 4935033.7481
BXD28/TyJ m 6721134.5 493550.7255 7724150.2519 5718118.7481
BXH4/TyJ m 6766762.0 493550.7255 7769777.7519 5763746.2481
C3H/HeJ m 7308017.75 493550.7255 8311033.5019 6305001.9981
C57BL/6J m 9200940.0 312148.8867 9835302.861 8566577.139
CXB11/HiAJ m 6349202.5 493550.7255 7352218.2519 5346186.7481
CXB12/HiAJ m 8200699.0 493550.7255 9203714.7519 7197683.2481
CXB13/HiAJ m 8565125.1667 402982.4799 9384084.0987 7746166.2346
CXB1/ByJ m 6469249.3333 402982.4799 7288208.2654 5650290.4013
CXB2/ByJ m 8339075.8333 402982.4799 9158034.7654 7520116.9013
CXB3/ByJ m 7111754.5 493550.7255 8114770.2519 6108738.7481
CXB4/ByJ m 6897607.75 493550.7255 7900623.5019 5894591.9981
CXB6/ByJ m 7472096.8333 402982.4799 8291055.7654 6653137.9013
CXB7/ByJ m 7461506.75 493550.7255 8464522.5019 6458490.9981
CXB8/HiAJ m 10035468.0 402982.4799 10854426.932 9216509.068
CXB9/HiAJ m 7855522.3333 402982.4799 8674481.2654 7036563.4013
DBA/2J m 5602675.0 348993.0648 6311914.2398 4893435.7602




  GWAS USING LINEAR MIXED MODELS