Project measure / variable:   HMDPpheno6   hypotaurine

ID, description, units MPD:50111   hypotaurine   liver hypotaurine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver hypotaurine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1487760   None
Median of the strain means1181614   None
SD of the strain means± 1003270
Coefficient of variation (CV)0.674
Min–max range of strain means422678   –   5483260   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 84235304301570.2 4011204966741.44 4.1212 0.0001
Residuals 34 33092760638630.1 973316489371.474


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1293816.0 0.0   1   0.0 0.0 1293816.0, 1293816.0 -0.19
A/J m 1405794.0 667638.0   2   472091.0 0.475 933703.0, 1877886.0 -0.08
AKR/J m 743520.0 0.0   1   0.0 0.0 743520.0, 743520.0 -0.74
AXB10/PgnJ m 1037923.0 0.0   1   0.0 0.0 1037923.0, 1037923.0 -0.45
AXB12/PgnJ m 1465606.0 0.0   1   0.0 0.0 1465606.0, 1465606.0 -0.02
AXB13/PgnJ m 996661.0 0.0   1   0.0 0.0 996661.0, 996661.0 -0.49
AXB15/PgnJ m 812754.0 0.0   1   0.0 0.0 812754.0, 812754.0 -0.67
AXB19a/PgnJ m 1476983.0 0.0   1   0.0 0.0 1476983.0, 1476983.0 -0.01
AXB19b/PgnJ m 1882194.0 92820.0   2   65634.0 0.0493 1816560.0, 1947828.0 0.39
AXB19/PgnJ m 1513187.0 0.0   1   0.0 0.0 1513187.0, 1513187.0 0.03
AXB1/PgnJ m 5483260.0 0.0   1   0.0 0.0 5483260.0, 5483260.0 3.98
AXB23/PgnJ m 1117260.0 0.0   1   0.0 0.0 1117260.0, 1117260.0 -0.37
AXB24/PgnJ m 821354.0 11450.0   2   8096.0 0.0139 813258.0, 829451.0 -0.66
AXB2/PgnJ m 3223870.0 0.0   1   0.0 0.0 3223870.0, 3223870.0 1.73
AXB4/PgnJ m 1950483.0 0.0   1   0.0 0.0 1950483.0, 1950483.0 0.46
AXB5/PgnJ m 719851.0 0.0   1   0.0 0.0 719851.0, 719851.0 -0.77
AXB6/PgnJ m 1804912.0 0.0   1   0.0 0.0 1804912.0, 1804912.0 0.32
AXB8/PgnJ m 1138182.0 0.0   1   0.0 0.0 1138182.0, 1138182.0 -0.35
BALB/cJ m 1707647.0 166110.0   3 95904.0 0.0973 1568339.0, 1891483.0 0.22
BTBR T+ Itpr3tf/J m 820686.0 0.0   1   0.0 0.0 820686.0, 820686.0 -0.66
BUB/BnJ m 992709.0 0.0   1   0.0 0.0 992709.0, 992709.0 -0.49
BXA11/PgnJ m 454569.0 0.0   1   0.0 0.0 454569.0, 454569.0 -1.03
BXA12/PgnJ m 762551.0 0.0   1   0.0 0.0 762551.0, 762551.0 -0.72
BXA13/PgnJ m 1769935.0 0.0   1   0.0 0.0 1769935.0, 1769935.0 0.28
BXA14/PgnJ m 2325560.0 0.0   1   0.0 0.0 2325560.0, 2325560.0 0.84
BXA16/PgnJ m 1455050.0 286470.0   2   202565.0 0.197 1252485.0, 1657614.0 -0.03
BXA1/PgnJ m 1357629.0 0.0   1   0.0 0.0 1357629.0, 1357629.0 -0.13
BXA24/PgnJ m 1939683.0 0.0   1   0.0 0.0 1939683.0, 1939683.0 0.45
BXA25/PgnJ m 1180152.0 0.0   1   0.0 0.0 1180152.0, 1180152.0 -0.31
BXA26/PgnJ m 1712694.0 0.0   1   0.0 0.0 1712694.0, 1712694.0 0.22
BXA2/PgnJ m 1187209.0 0.0   1   0.0 0.0 1187209.0, 1187209.0 -0.3
BXA4/PgnJ m 741020.0 0.0   1   0.0 0.0 741020.0, 741020.0 -0.74
BXA7/PgnJ m 1192045.0 0.0   1   0.0 0.0 1192045.0, 1192045.0 -0.29
BXA8/PgnJ m 639248.0 0.0   1   0.0 0.0 639248.0, 639248.0 -0.85
BXD11/TyJ m 1116044.0 0.0   1   0.0 0.0 1116044.0, 1116044.0 -0.37
BXD12/TyJ m 1719578.0 0.0   1   0.0 0.0 1719578.0, 1719578.0 0.23
BXD13/TyJ m 569239.0 0.0   1   0.0 0.0 569239.0, 569239.0 -0.92
BXD14/TyJ m 2441656.0 0.0   1   0.0 0.0 2441656.0, 2441656.0 0.95
BXD15/TyJ m 1145711.0 0.0   1   0.0 0.0 1145711.0, 1145711.0 -0.34
BXD18/TyJ m 3508592.0 0.0   1   0.0 0.0 3508592.0, 3508592.0 2.01
BXD19/TyJ m 1136203.0 615693.0   2   435361.0 0.542 700842.0, 1571564.0 -0.35
BXD1/TyJ m 1593651.0 0.0   1   0.0 0.0 1593651.0, 1593651.0 0.11
BXD20/TyJ m 3259412.0 0.0   1   0.0 0.0 3259412.0, 3259412.0 1.77
BXD21/TyJ m 1381614.0 0.0   1   0.0 0.0 1381614.0, 1381614.0 -0.11
BXD22/TyJ m 1565917.0 0.0   1   0.0 0.0 1565917.0, 1565917.0 0.08
BXD24/TyJ m 983892.0 0.0   1   0.0 0.0 983892.0, 983892.0 -0.5
BXD24/TyJ-Cep290rd16/J m 696448.0 0.0   1   0.0 0.0 696448.0, 696448.0 -0.79
BXD28/TyJ m 1110318.0 209730.0   2   148302.0 0.189 962017.0, 1258620.0 -0.38
BXD29-Tlr4lps-2J/J m 2895580.0 0.0   1   0.0 0.0 2895580.0, 2895580.0 1.4
BXD2/TyJ m 1257448.0 0.0   1   0.0 0.0 1257448.0, 1257448.0 -0.23
BXD32/TyJ m 2778944.0 0.0   1   0.0 0.0 2778944.0, 2778944.0 1.29
BXD33/TyJ m 3572324.0 0.0   1   0.0 0.0 3572324.0, 3572324.0 2.08
BXD34/TyJ m 1531064.0 0.0   1   0.0 0.0 1531064.0, 1531064.0 0.04
BXD36/TyJ m 1329614.0 0.0   1   0.0 0.0 1329614.0, 1329614.0 -0.16
BXD38/TyJ m 1041621.0 0.0   1   0.0 0.0 1041621.0, 1041621.0 -0.44
BXD39/TyJ m 574233.0 0.0   1   0.0 0.0 574233.0, 574233.0 -0.91
BXD40/TyJ m 1141605.0 0.0   1   0.0 0.0 1141605.0, 1141605.0 -0.35
BXD42/TyJ m 1183076.0 0.0   1   0.0 0.0 1183076.0, 1183076.0 -0.3
BXD5/TyJ m 1347995.0 0.0   1   0.0 0.0 1347995.0, 1347995.0 -0.14
BXD6/TyJ m 2605122.0 0.0   1   0.0 0.0 2605122.0, 2605122.0 1.11
BXD8/TyJ m 2019282.0 0.0   1   0.0 0.0 2019282.0, 2019282.0 0.53
BXD9/TyJ m 589693.0 0.0   1   0.0 0.0 589693.0, 589693.0 -0.9
BXH10/TyJ m 1163373.0 0.0   1   0.0 0.0 1163373.0, 1163373.0 -0.32
BXH19/TyJ m 1002106.0 0.0   1   0.0 0.0 1002106.0, 1002106.0 -0.48
BXH20/KccJ m 1034602.0 0.0   1   0.0 0.0 1034602.0, 1034602.0 -0.45
BXH22/KccJ m 895981.0 0.0   1   0.0 0.0 895981.0, 895981.0 -0.59
BXH2/TyJ m 1597528.0 0.0   1   0.0 0.0 1597528.0, 1597528.0 0.11
BXH4/TyJ m 1352516.0 354696.0   2   250808.0 0.262 1101709.0, 1603324.0 -0.13
BXH6/TyJ m 1306100.0 0.0   1   0.0 0.0 1306100.0, 1306100.0 -0.18
BXH7/TyJ m 1552916.0 0.0   1   0.0 0.0 1552916.0, 1552916.0 0.06
BXH8/TyJ m 1237987.0 0.0   1   0.0 0.0 1237987.0, 1237987.0 -0.25
BXH9/TyJ m 464192.0 0.0   1   0.0 0.0 464192.0, 464192.0 -1.02
C3H/HeJ m 993739.0 259925.0   2   183795.0 0.262 809944.0, 1177534.0 -0.49
C57BL/6J m 5305629.0 2259352.0   5 1010413.0 0.426 3059588.0, 8742367.0 3.81
C57L/J m 893647.0 0.0   1   0.0 0.0 893647.0, 893647.0 -0.59
C58/J m 5174310.0 0.0   1   0.0 0.0 5174310.0, 5174310.0 3.67
CAST/EiJ m 573341.0 0.0   1   0.0 0.0 573341.0, 573341.0 -0.91
CBA/J m 871518.0 0.0   1   0.0 0.0 871518.0, 871518.0 -0.61
CE/J m 612750.0 0.0   1   0.0 0.0 612750.0, 612750.0 -0.87
CXB11/HiAJ m 716024.0 385090.0   2   272300.0 0.538 443724.0, 988324.0 -0.77
CXB12/HiAJ m 1482084.0 381322.0   2   269635.0 0.257 1212449.0, 1751720.0 -0.01
CXB13/HiAJ m 1930135.0 1538720.0   3 888380.0 0.797 862692.0, 3693931.0 0.44
CXB1/ByJ m 1005755.0 289503.0   3 167145.0 0.288 710213.0, 1288815.0 -0.48
CXB2/ByJ m 1038034.0 455112.0   3 262759.0 0.438 524343.0, 1390892.0 -0.45
CXB3/ByJ m 693826.0 79935.0   2   56523.0 0.115 637304.0, 750349.0 -0.79
CXB4/ByJ m 1103711.0 518438.0   2   366591.0 0.47 737120.0, 1470302.0 -0.38
CXB6/ByJ m 2682155.0 1268031.0   3 732098.0 0.473 1491439.0, 4015448.0 1.19
CXB7/ByJ m 1026685.0 221483.0   2   156612.0 0.216 870073.0, 1183298.0 -0.46
CXB8/HiAJ m 1957845.0 1031939.0   3 595790.0 0.527 1247942.0, 3141606.0 0.47
CXB9/HiAJ m 1268206.0 258748.0   3 149388.0 0.204 1026436.0, 1541113.0 -0.22
DBA/2J m 907446.0 130738.0   4 65369.0 0.144 769728.0, 1076622.0 -0.58
FVB/NJ m 5268002.0 0.0   1   0.0 0.0 5268002.0, 5268002.0 3.77
I/LnJ m 1554534.0 0.0   1   0.0 0.0 1554534.0, 1554534.0 0.07
KK/HlJ m 1037930.0 0.0   1   0.0 0.0 1037930.0, 1037930.0 -0.45
LG/J m 422678.0 0.0   1   0.0 0.0 422678.0, 422678.0 -1.06
LP/J m 729312.0 0.0   1   0.0 0.0 729312.0, 729312.0 -0.76
MA/MyJ m 985893.0 0.0   1   0.0 0.0 985893.0, 985893.0 -0.5
NOD/ShiLtJ m 1066875.0 0.0   1   0.0 0.0 1066875.0, 1066875.0 -0.42
NON/ShiLtJ m 1174246.0 0.0   1   0.0 0.0 1174246.0, 1174246.0 -0.31
NZW/LacJ m 495466.0 0.0   1   0.0 0.0 495466.0, 495466.0 -0.99
PL/J m 1219270.0 0.0   1   0.0 0.0 1219270.0, 1219270.0 -0.27
RIIIS/J m 763537.0 0.0   1   0.0 0.0 763537.0, 763537.0 -0.72
SEA/GnJ m 1053510.0 0.0   1   0.0 0.0 1053510.0, 1053510.0 -0.43
SJL/J m 2287001.0 0.0   1   0.0 0.0 2287001.0, 2287001.0 0.8
SM/J m 1084191.0 0.0   1   0.0 0.0 1084191.0, 1084191.0 -0.4
SWR/J m 1494127.0 0.0   1   0.0 0.0 1494127.0, 1494127.0 0.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1405794.3 697608.9483 2823506.2547 0.0
AXB19b/PgnJ m 1882194.05 697608.9483 3299906.0047 464482.0953
AXB24/PgnJ m 821354.45 697608.9483 2239066.4047 0.0
BALB/cJ m 1707646.7333 569595.3211 2865203.6971 550089.7695
BXA16/PgnJ m 1455049.95 697608.9483 2872761.9047 37337.9953
BXD19/TyJ m 1136203.05 697608.9483 2553915.0047 0.0
BXD28/TyJ m 1110318.45 697608.9483 2528030.4047 0.0
BXH4/TyJ m 1352516.35 697608.9483 2770228.3047 0.0
C3H/HeJ m 993739.15 697608.9483 2411451.1047 0.0
C57BL/6J m 5305628.72 441206.6385 6202268.4886 4408988.9514
CXB11/HiAJ m 716023.75 697608.9483 2133735.7047 0.0
CXB12/HiAJ m 1482084.2 697608.9483 2899796.1547 64372.2453
CXB13/HiAJ m 1930134.9667 569595.3211 3087691.9305 772578.0029
CXB1/ByJ m 1005755.0 569595.3211 2163311.9638 0.0
CXB2/ByJ m 1038033.9333 569595.3211 2195590.8971 0.0
CXB3/ByJ m 693826.5 697608.9483 2111538.4547 0.0
CXB4/ByJ m 1103711.25 697608.9483 2521423.2047 0.0
CXB6/ByJ m 2682155.2667 569595.3211 3839712.2305 1524598.3029
CXB7/ByJ m 1026685.45 697608.9483 2444397.4047 0.0
CXB8/HiAJ m 1957845.0 569595.3211 3115401.9638 800288.0362
CXB9/HiAJ m 1268206.2 569595.3211 2425763.1638 110649.2362
DBA/2J m 907445.525 493284.0179 1909919.262 0.0




  GWAS USING LINEAR MIXED MODELS