Project measure / variable:   HMDPpheno6   Cys

ID, description, units MPD:50110   Cys   liver cysteine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver cysteine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1322197   None
Median of the strain means1283140   None
SD of the strain means± 367610
Coefficient of variation (CV)0.278
Min–max range of strain means449798   –   2438440   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 9117246473848.91 434154593992.805 1.4214 0.1765
Residuals 34 10385370610081.9 305452076767.116


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1220028.0 0.0   1   0.0 0.0 1220028.0, 1220028.0 -0.28
A/J m 1418949.0 270141.0   2   191019.0 0.19 1227930.0, 1609967.0 0.26
AKR/J m 1330574.0 0.0   1   0.0 0.0 1330574.0, 1330574.0 0.02
AXB10/PgnJ m 1304948.0 0.0   1   0.0 0.0 1304948.0, 1304948.0 -0.05
AXB12/PgnJ m 938990.0 0.0   1   0.0 0.0 938990.0, 938990.0 -1.04
AXB13/PgnJ m 1512128.0 0.0   1   0.0 0.0 1512128.0, 1512128.0 0.52
AXB15/PgnJ m 1212819.0 0.0   1   0.0 0.0 1212819.0, 1212819.0 -0.3
AXB19a/PgnJ m 1591509.0 0.0   1   0.0 0.0 1591509.0, 1591509.0 0.73
AXB19b/PgnJ m 2096546.0 10130.0   2   7163.0 0.00483 2089383.0, 2103710.0 2.11
AXB19/PgnJ m 1442799.0 0.0   1   0.0 0.0 1442799.0, 1442799.0 0.33
AXB1/PgnJ m 1177948.0 0.0   1   0.0 0.0 1177948.0, 1177948.0 -0.39
AXB23/PgnJ m 1478387.0 0.0   1   0.0 0.0 1478387.0, 1478387.0 0.42
AXB24/PgnJ m 1199861.0 182311.0   2   128913.0 0.152 1070948.0, 1328774.0 -0.33
AXB2/PgnJ m 1194027.0 0.0   1   0.0 0.0 1194027.0, 1194027.0 -0.35
AXB4/PgnJ m 1186976.0 0.0   1   0.0 0.0 1186976.0, 1186976.0 -0.37
AXB5/PgnJ m 449798.0 0.0   1   0.0 0.0 449798.0, 449798.0 -2.37
AXB6/PgnJ m 1577644.0 0.0   1   0.0 0.0 1577644.0, 1577644.0 0.69
AXB8/PgnJ m 1199072.0 0.0   1   0.0 0.0 1199072.0, 1199072.0 -0.33
BALB/cJ m 874650.0 247014.0   3 142614.0 0.282 607980.0, 1095629.0 -1.22
BTBR T+ Itpr3tf/J m 1046108.0 0.0   1   0.0 0.0 1046108.0, 1046108.0 -0.75
BUB/BnJ m 1288178.0 0.0   1   0.0 0.0 1288178.0, 1288178.0 -0.09
BXA11/PgnJ m 1317329.0 0.0   1   0.0 0.0 1317329.0, 1317329.0 -0.01
BXA12/PgnJ m 899453.0 0.0   1   0.0 0.0 899453.0, 899453.0 -1.15
BXA13/PgnJ m 1298766.0 0.0   1   0.0 0.0 1298766.0, 1298766.0 -0.06
BXA14/PgnJ m 1467991.0 0.0   1   0.0 0.0 1467991.0, 1467991.0 0.4
BXA16/PgnJ m 1362774.0 346205.0   2   244804.0 0.254 1117970.0, 1607578.0 0.11
BXA1/PgnJ m 1365381.0 0.0   1   0.0 0.0 1365381.0, 1365381.0 0.12
BXA24/PgnJ m 1923379.0 0.0   1   0.0 0.0 1923379.0, 1923379.0 1.64
BXA25/PgnJ m 1034050.0 0.0   1   0.0 0.0 1034050.0, 1034050.0 -0.78
BXA26/PgnJ m 1792923.0 0.0   1   0.0 0.0 1792923.0, 1792923.0 1.28
BXA2/PgnJ m 1588182.0 0.0   1   0.0 0.0 1588182.0, 1588182.0 0.72
BXA4/PgnJ m 1687806.0 0.0   1   0.0 0.0 1687806.0, 1687806.0 0.99
BXA7/PgnJ m 1919325.0 0.0   1   0.0 0.0 1919325.0, 1919325.0 1.62
BXA8/PgnJ m 972497.0 0.0   1   0.0 0.0 972497.0, 972497.0 -0.95
BXD11/TyJ m 1111259.0 0.0   1   0.0 0.0 1111259.0, 1111259.0 -0.57
BXD12/TyJ m 1821321.0 0.0   1   0.0 0.0 1821321.0, 1821321.0 1.36
BXD13/TyJ m 1189958.0 0.0   1   0.0 0.0 1189958.0, 1189958.0 -0.36
BXD14/TyJ m 1312562.0 0.0   1   0.0 0.0 1312562.0, 1312562.0 -0.03
BXD15/TyJ m 1356672.0 0.0   1   0.0 0.0 1356672.0, 1356672.0 0.09
BXD18/TyJ m 1294373.0 0.0   1   0.0 0.0 1294373.0, 1294373.0 -0.08
BXD19/TyJ m 1036750.0 82201.0   2   58125.0 0.0793 978625.0, 1094875.0 -0.78
BXD1/TyJ m 1094552.0 0.0   1   0.0 0.0 1094552.0, 1094552.0 -0.62
BXD20/TyJ m 1135006.0 0.0   1   0.0 0.0 1135006.0, 1135006.0 -0.51
BXD21/TyJ m 1125311.0 0.0   1   0.0 0.0 1125311.0, 1125311.0 -0.54
BXD22/TyJ m 1423934.0 0.0   1   0.0 0.0 1423934.0, 1423934.0 0.28
BXD24/TyJ m 1083589.0 0.0   1   0.0 0.0 1083589.0, 1083589.0 -0.65
BXD24/TyJ-Cep290rd16/J m 1051181.0 0.0   1   0.0 0.0 1051181.0, 1051181.0 -0.74
BXD28/TyJ m 1196542.0 87757.0   2   62054.0 0.0733 1134488.0, 1258596.0 -0.34
BXD29-Tlr4lps-2J/J m 1239572.0 0.0   1   0.0 0.0 1239572.0, 1239572.0 -0.22
BXD2/TyJ m 1438158.0 0.0   1   0.0 0.0 1438158.0, 1438158.0 0.32
BXD32/TyJ m 1551220.0 0.0   1   0.0 0.0 1551220.0, 1551220.0 0.62
BXD33/TyJ m 1562688.0 0.0   1   0.0 0.0 1562688.0, 1562688.0 0.65
BXD34/TyJ m 1305438.0 0.0   1   0.0 0.0 1305438.0, 1305438.0 -0.05
BXD36/TyJ m 882617.0 0.0   1   0.0 0.0 882617.0, 882617.0 -1.2
BXD38/TyJ m 1110125.0 0.0   1   0.0 0.0 1110125.0, 1110125.0 -0.58
BXD39/TyJ m 1522604.0 0.0   1   0.0 0.0 1522604.0, 1522604.0 0.55
BXD40/TyJ m 1117151.0 0.0   1   0.0 0.0 1117151.0, 1117151.0 -0.56
BXD42/TyJ m 974629.0 0.0   1   0.0 0.0 974629.0, 974629.0 -0.95
BXD5/TyJ m 1172320.0 0.0   1   0.0 0.0 1172320.0, 1172320.0 -0.41
BXD6/TyJ m 778272.0 0.0   1   0.0 0.0 778272.0, 778272.0 -1.48
BXD8/TyJ m 947720.0 0.0   1   0.0 0.0 947720.0, 947720.0 -1.02
BXD9/TyJ m 1128695.0 0.0   1   0.0 0.0 1128695.0, 1128695.0 -0.53
BXH10/TyJ m 755059.0 0.0   1   0.0 0.0 755059.0, 755059.0 -1.54
BXH19/TyJ m 1355905.0 0.0   1   0.0 0.0 1355905.0, 1355905.0 0.09
BXH20/KccJ m 2438440.0 0.0   1   0.0 0.0 2438440.0, 2438440.0 3.04
BXH22/KccJ m 1708527.0 0.0   1   0.0 0.0 1708527.0, 1708527.0 1.05
BXH2/TyJ m 1630686.0 0.0   1   0.0 0.0 1630686.0, 1630686.0 0.84
BXH4/TyJ m 1685780.0 370199.0   2   261771.0 0.22 1424010.0, 1947551.0 0.99
BXH6/TyJ m 1237282.0 0.0   1   0.0 0.0 1237282.0, 1237282.0 -0.23
BXH7/TyJ m 1204829.0 0.0   1   0.0 0.0 1204829.0, 1204829.0 -0.32
BXH8/TyJ m 1304449.0 0.0   1   0.0 0.0 1304449.0, 1304449.0 -0.05
BXH9/TyJ m 1417142.0 0.0   1   0.0 0.0 1417142.0, 1417142.0 0.26
C3H/HeJ m 1106876.0 199042.0   2   140744.0 0.18 966132.0, 1247620.0 -0.59
C57BL/6J m 1720847.0 553965.0   5 247741.0 0.322 1238974.0, 2638496.0 1.08
C57L/J m 751013.0 0.0   1   0.0 0.0 751013.0, 751013.0 -1.55
C58/J m 1184350.0 0.0   1   0.0 0.0 1184350.0, 1184350.0 -0.37
CAST/EiJ m 1944619.0 0.0   1   0.0 0.0 1944619.0, 1944619.0 1.69
CBA/J m 538900.0 0.0   1   0.0 0.0 538900.0, 538900.0 -2.13
CE/J m 1763582.0 0.0   1   0.0 0.0 1763582.0, 1763582.0 1.2
CXB11/HiAJ m 1252311.0 35769.0   2   25293.0 0.0286 1227018.0, 1277603.0 -0.19
CXB12/HiAJ m 2301063.0 855914.0   2   605222.0 0.372 1695840.0, 2906286.0 2.66
CXB13/HiAJ m 1506104.0 175259.0   3 101186.0 0.116 1340649.0, 1689748.0 0.5
CXB1/ByJ m 1572332.0 456935.0   3 263812.0 0.291 1255343.0, 2096105.0 0.68
CXB2/ByJ m 2231475.0 1329449.0   3 767557.0 0.596 1323955.0, 3757494.0 2.47
CXB3/ByJ m 1947853.0 188356.0   2   133188.0 0.0967 1814665.0, 2081041.0 1.7
CXB4/ByJ m 1533074.0 183444.0   2   129715.0 0.12 1403359.0, 1662789.0 0.57
CXB6/ByJ m 1310767.0 221615.0   3 127950.0 0.169 1127686.0, 1557144.0 -0.03
CXB7/ByJ m 1506269.0 176998.0   2   125157.0 0.118 1381112.0, 1631425.0 0.5
CXB8/HiAJ m 1590452.0 371562.0   3 214522.0 0.234 1249683.0, 1986593.0 0.73
CXB9/HiAJ m 2238818.0 1291299.0   3 745532.0 0.577 1322550.0, 3715673.0 2.49
DBA/2J m 1094982.0 142689.0   4 71345.0 0.13 962974.0, 1225227.0 -0.62
FVB/NJ m 794210.0 0.0   1   0.0 0.0 794210.0, 794210.0 -1.44
I/LnJ m 1145034.0 0.0   1   0.0 0.0 1145034.0, 1145034.0 -0.48
KK/HlJ m 1032642.0 0.0   1   0.0 0.0 1032642.0, 1032642.0 -0.79
LG/J m 1138386.0 0.0   1   0.0 0.0 1138386.0, 1138386.0 -0.5
LP/J m 948571.0 0.0   1   0.0 0.0 948571.0, 948571.0 -1.02
MA/MyJ m 1275183.0 0.0   1   0.0 0.0 1275183.0, 1275183.0 -0.13
NOD/ShiLtJ m 1277113.0 0.0   1   0.0 0.0 1277113.0, 1277113.0 -0.12
NON/ShiLtJ m 1064653.0 0.0   1   0.0 0.0 1064653.0, 1064653.0 -0.7
NZW/LacJ m 1021822.0 0.0   1   0.0 0.0 1021822.0, 1021822.0 -0.82
PL/J m 1455974.0 0.0   1   0.0 0.0 1455974.0, 1455974.0 0.36
RIIIS/J m 784206.0 0.0   1   0.0 0.0 784206.0, 784206.0 -1.46
SEA/GnJ m 1278102.0 0.0   1   0.0 0.0 1278102.0, 1278102.0 -0.12
SJL/J m 597119.0 0.0   1   0.0 0.0 597119.0, 597119.0 -1.97
SM/J m 1458434.0 0.0   1   0.0 0.0 1458434.0, 1458434.0 0.37
SWR/J m 1711618.0 0.0   1   0.0 0.0 1711618.0, 1711618.0 1.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1418948.6 390801.7891 2213153.3902 624743.8098
AXB19b/PgnJ m 2096546.2 390801.7891 2890750.9902 1302341.4098
AXB24/PgnJ m 1199861.3 390801.7891 1994066.0902 405656.5098
BALB/cJ m 874649.5333 319088.3246 1523115.0291 226184.0376
BXA16/PgnJ m 1362774.4 390801.7891 2156979.1902 568569.6098
BXD19/TyJ m 1036749.95 390801.7891 1830954.7402 242545.1598
BXD28/TyJ m 1196542.2 390801.7891 1990746.9902 402337.4098
BXH4/TyJ m 1685780.05 390801.7891 2479984.8402 891575.2598
C3H/HeJ m 1106875.8 390801.7891 1901080.5902 312671.0098
C57BL/6J m 1720846.98 247164.7535 2223146.1931 1218547.7669
CXB11/HiAJ m 1252310.7 390801.7891 2046515.4902 458105.9098
CXB12/HiAJ m 2301063.0 390801.7891 3095267.7902 1506858.2098
CXB13/HiAJ m 1506104.2 319088.3246 2154569.6957 857638.7043
CXB1/ByJ m 1572331.8 319088.3246 2220797.2957 923866.3043
CXB2/ByJ m 2231474.6 319088.3246 2879940.0957 1583009.1043
CXB3/ByJ m 1947853.0 390801.7891 2742057.7902 1153648.2098
CXB4/ByJ m 1533074.15 390801.7891 2327278.9402 738869.3598
CXB6/ByJ m 1310767.1333 319088.3246 1959232.6291 662301.6376
CXB7/ByJ m 1506268.6 390801.7891 2300473.3902 712063.8098
CXB8/HiAJ m 1590452.5 319088.3246 2238917.9957 941987.0043
CXB9/HiAJ m 2238817.8667 319088.3246 2887283.3624 1590352.3709
DBA/2J m 1094982.125 276338.5952 1656569.7178 533394.5322




  GWAS USING LINEAR MIXED MODELS