Project measure / variable:   HMDPpheno6   AHB

ID, description, units MPD:50109   AHB   liver 2-hydroxybutyrate (AHB) (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   99 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver 2-hydroxybutyrate (AHB) (16h fast), relative abundance

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-Cep290<rd16>/JBXD19/TyJBXH7/TyJBXD8/TyJBXA1/PgnJBXA25/PgnJBXD13/TyJRIIIS/JBXD36/TyJBXH4/TyJBXA13/PgnJKK/HlJI/LnJBXD38/TyJAXB23/PgnJBXH9/TyJCBA/JBXD24/TyJBXD11/TyJ129X1/SvJSEA/GnJBXD22/TyJBXH22/KccJBXD9/TyJBXA11/PgnJCAST/EiJCXB11/HiAJBXD39/TyJBXD18/TyJDBA/2JBXD21/TyJLG/J (no units) 50,000100,000150,000200,000250,000300,000350,000400,000450,000500,000550,000600,000650,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested99 strains
Mean of the strain means196391   None
Median of the strain means148517   None
SD of the strain means± 128300
Coefficient of variation (CV)0.653
Min–max range of strain means33632   –   635430   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 459664434500.982 22983221725.0491 8.415 < 0.0001
Residuals 31 84667579787.692 2731212251.2159


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 99 (99)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 93411.0 0.0   1   0.0 0.0 93411.0, 93411.0 -0.8
A/J m 240444.0 19616.0   2   13870.0 0.0816 226574.0, 254315.0 0.34
AKR/J m 125447.0 0.0   1   0.0 0.0 125447.0, 125447.0 -0.55
AXB10/PgnJ m 127941.0 0.0   1   0.0 0.0 127941.0, 127941.0 -0.53
AXB12/PgnJ m 170218.0 0.0   1   0.0 0.0 170218.0, 170218.0 -0.2
AXB13/PgnJ m 134119.0 0.0   1   0.0 0.0 134119.0, 134119.0 -0.49
AXB15/PgnJ m 270326.0 0.0   1   0.0 0.0 270326.0, 270326.0 0.58
AXB19a/PgnJ m 300851.0 0.0   1   0.0 0.0 300851.0, 300851.0 0.81
AXB19b/PgnJ m 135463.0 4734.0   2   3347.0 0.0349 132116.0, 138810.0 -0.47
AXB19/PgnJ m 128032.0 0.0   1   0.0 0.0 128032.0, 128032.0 -0.53
AXB1/PgnJ m 635430.0 0.0   1   0.0 0.0 635430.0, 635430.0 3.42
AXB23/PgnJ m 97157.0 0.0   1   0.0 0.0 97157.0, 97157.0 -0.77
AXB24/PgnJ m 128225.0 71742.0   2   50729.0 0.56 77495.0, 178954.0 -0.53
AXB2/PgnJ m 337611.0 0.0   1   0.0 0.0 337611.0, 337611.0 1.1
AXB4/PgnJ m 376462.0 0.0   1   0.0 0.0 376462.0, 376462.0 1.4
AXB5/PgnJ m 367226.0 0.0   1   0.0 0.0 367226.0, 367226.0 1.33
AXB6/PgnJ m 277582.0 0.0   1   0.0 0.0 277582.0, 277582.0 0.63
AXB8/PgnJ m 342230.0 0.0   1   0.0 0.0 342230.0, 342230.0 1.14
BALB/cJ m 153674.0 47607.0   2   33663.0 0.31 120010.0, 187337.0 -0.33
BUB/BnJ m 178634.0 0.0   1   0.0 0.0 178634.0, 178634.0 -0.14
BXA11/PgnJ m 76021.0 0.0   1   0.0 0.0 76021.0, 76021.0 -0.94
BXA12/PgnJ m 428156.0 0.0   1   0.0 0.0 428156.0, 428156.0 1.81
BXA13/PgnJ m 101807.0 0.0   1   0.0 0.0 101807.0, 101807.0 -0.74
BXA14/PgnJ m 419109.0 0.0   1   0.0 0.0 419109.0, 419109.0 1.74
BXA16/PgnJ m 126822.0 46968.0   2   33211.0 0.37 93611.0, 160034.0 -0.54
BXA1/PgnJ m 112994.0 0.0   1   0.0 0.0 112994.0, 112994.0 -0.65
BXA24/PgnJ m 312745.0 0.0   1   0.0 0.0 312745.0, 312745.0 0.91
BXA25/PgnJ m 111342.0 0.0   1   0.0 0.0 111342.0, 111342.0 -0.66
BXA26/PgnJ m 509361.0 0.0   1   0.0 0.0 509361.0, 509361.0 2.44
BXA2/PgnJ m 175912.0 0.0   1   0.0 0.0 175912.0, 175912.0 -0.16
BXA4/PgnJ m 571075.0 0.0   1   0.0 0.0 571075.0, 571075.0 2.92
BXA7/PgnJ m 141410.0 0.0   1   0.0 0.0 141410.0, 141410.0 -0.43
BXA8/PgnJ m 166051.0 0.0   1   0.0 0.0 166051.0, 166051.0 -0.24
BXD11/TyJ m 93673.0 0.0   1   0.0 0.0 93673.0, 93673.0 -0.8
BXD13/TyJ m 110786.0 0.0   1   0.0 0.0 110786.0, 110786.0 -0.67
BXD14/TyJ m 267060.0 0.0   1   0.0 0.0 267060.0, 267060.0 0.55
BXD18/TyJ m 53281.0 0.0   1   0.0 0.0 53281.0, 53281.0 -1.12
BXD19/TyJ m 117866.0 61382.0   2   43404.0 0.521 74463.0, 161270.0 -0.61
BXD20/TyJ m 120549.0 0.0   1   0.0 0.0 120549.0, 120549.0 -0.59
BXD21/TyJ m 47590.0 0.0   1   0.0 0.0 47590.0, 47590.0 -1.16
BXD22/TyJ m 86073.0 0.0   1   0.0 0.0 86073.0, 86073.0 -0.86
BXD24/TyJ m 93675.0 0.0   1   0.0 0.0 93675.0, 93675.0 -0.8
BXD24/TyJ-Cep290rd16/J m 119898.0 0.0   1   0.0 0.0 119898.0, 119898.0 -0.6
BXD28/TyJ m 161821.0 6866.0   2   4855.0 0.0424 156966.0, 166676.0 -0.27
BXD2/TyJ m 170674.0 0.0   1   0.0 0.0 170674.0, 170674.0 -0.2
BXD32/TyJ m 400843.0 0.0   1   0.0 0.0 400843.0, 400843.0 1.59
BXD33/TyJ m 562501.0 0.0   1   0.0 0.0 562501.0, 562501.0 2.85
BXD34/TyJ m 177264.0 0.0   1   0.0 0.0 177264.0, 177264.0 -0.15
BXD36/TyJ m 108684.0 0.0   1   0.0 0.0 108684.0, 108684.0 -0.68
BXD38/TyJ m 98343.0 0.0   1   0.0 0.0 98343.0, 98343.0 -0.76
BXD39/TyJ m 63031.0 0.0   1   0.0 0.0 63031.0, 63031.0 -1.04
BXD40/TyJ m 131436.0 0.0   1   0.0 0.0 131436.0, 131436.0 -0.51
BXD5/TyJ m 244590.0 0.0   1   0.0 0.0 244590.0, 244590.0 0.38
BXD6/TyJ m 156193.0 0.0   1   0.0 0.0 156193.0, 156193.0 -0.31
BXD8/TyJ m 115722.0 0.0   1   0.0 0.0 115722.0, 115722.0 -0.63
BXD9/TyJ m 83883.0 0.0   1   0.0 0.0 83883.0, 83883.0 -0.88
BXH10/TyJ m 136229.0 0.0   1   0.0 0.0 136229.0, 136229.0 -0.47
BXH19/TyJ m 231728.0 0.0   1   0.0 0.0 231728.0, 231728.0 0.28
BXH20/KccJ m 132332.0 0.0   1   0.0 0.0 132332.0, 132332.0 -0.5
BXH22/KccJ m 85185.0 0.0   1   0.0 0.0 85185.0, 85185.0 -0.87
BXH2/TyJ m 175403.0 0.0   1   0.0 0.0 175403.0, 175403.0 -0.16
BXH4/TyJ m 104839.0 46252.0   2   32705.0 0.441 72134.0, 137544.0 -0.71
BXH6/TyJ m 224632.0 0.0   1   0.0 0.0 224632.0, 224632.0 0.22
BXH7/TyJ m 116372.0 0.0   1   0.0 0.0 116372.0, 116372.0 -0.62
BXH8/TyJ m 361439.0 0.0   1   0.0 0.0 361439.0, 361439.0 1.29
BXH9/TyJ m 96220.0 0.0   1   0.0 0.0 96220.0, 96220.0 -0.78
C3H/HeJ m 170621.0 42323.0   2   29927.0 0.248 140694.0, 200548.0 -0.2
C57BL/6J m 344185.0 78400.0   5 35062.0 0.228 231872.0, 440084.0 1.15
C57L/J m 194508.0 0.0   1   0.0 0.0 194508.0, 194508.0 -0.01
C58/J m 553349.0 0.0   1   0.0 0.0 553349.0, 553349.0 2.78
CAST/EiJ m 73837.0 0.0   1   0.0 0.0 73837.0, 73837.0 -0.96
CBA/J m 95792.0 0.0   1   0.0 0.0 95792.0, 95792.0 -0.78
CE/J m 148517.0 0.0   1   0.0 0.0 148517.0, 148517.0 -0.37
CXB11/HiAJ m 70670.0 0.0   1   0.0 0.0 70670.0, 70670.0 -0.98
CXB12/HiAJ m 335684.0 11270.0   2   7969.0 0.0336 327716.0, 343653.0 1.09
CXB13/HiAJ m 396771.0 73755.0   3 42583.0 0.186 311626.0, 440924.0 1.56
CXB1/ByJ m 217700.0 23039.0   3 13302.0 0.106 201417.0, 244061.0 0.17
CXB2/ByJ m 205495.0 60743.0   3 35070.0 0.296 136434.0, 250640.0 0.07
CXB3/ByJ m 272171.0 68118.0   2   48167.0 0.25 224004.0, 320338.0 0.59
CXB4/ByJ m 208175.0 19994.0   2   14138.0 0.096 194038.0, 222313.0 0.09
CXB6/ByJ m 339533.0 68416.0   3 39500.0 0.201 282164.0, 415252.0 1.12
CXB7/ByJ m 199979.0 45783.0   2   32373.0 0.229 167606.0, 232352.0 0.03
CXB8/HiAJ m 199182.0 55849.0   3 32245.0 0.28 157422.0, 262620.0 0.02
CXB9/HiAJ m 161672.0 4657.0   3 2689.0 0.0288 157056.0, 166370.0 -0.27
DBA/2J m 51711.0 6433.0   3 3714.0 0.124 45456.0, 58308.0 -1.13
FVB/NJ m 217920.0 0.0   1   0.0 0.0 217920.0, 217920.0 0.17
I/LnJ m 100561.0 0.0   1   0.0 0.0 100561.0, 100561.0 -0.75
KK/HlJ m 101401.0 0.0   1   0.0 0.0 101401.0, 101401.0 -0.74
LG/J m 33632.0 0.0   1   0.0 0.0 33632.0, 33632.0 -1.27
LP/J m 147582.0 0.0   1   0.0 0.0 147582.0, 147582.0 -0.38
MA/MyJ m 377077.0 0.0   1   0.0 0.0 377077.0, 377077.0 1.41
NOD/ShiLtJ m 150996.0 0.0   1   0.0 0.0 150996.0, 150996.0 -0.35
NON/ShiLtJ m 218828.0 0.0   1   0.0 0.0 218828.0, 218828.0 0.17
NZW/LacJ m 132131.0 0.0   1   0.0 0.0 132131.0, 132131.0 -0.5
PL/J m 130164.0 0.0   1   0.0 0.0 130164.0, 130164.0 -0.52
RIIIS/J m 109150.0 0.0   1   0.0 0.0 109150.0, 109150.0 -0.68
SEA/GnJ m 90274.0 0.0   1   0.0 0.0 90274.0, 90274.0 -0.83
SJL/J m 145653.0 0.0   1   0.0 0.0 145653.0, 145653.0 -0.4
SWR/J m 124638.0 0.0   1   0.0 0.0 124638.0, 124638.0 -0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 240444.5 36954.1084 315812.9009 165076.0991
AXB19b/PgnJ m 135463.2 36954.1084 210831.6009 60094.7991
AXB24/PgnJ m 128224.85 36954.1084 203593.2509 52856.4491
BALB/cJ m 153673.95 36954.1084 229042.3509 78305.5491
BXA16/PgnJ m 126822.45 36954.1084 202190.8509 51454.0491
BXD19/TyJ m 117866.15 36954.1084 193234.5509 42497.7491
BXD28/TyJ m 161821.0 36954.1084 237189.4009 86452.5991
BXH4/TyJ m 104838.6 36954.1084 180207.0009 29470.1991
C3H/HeJ m 170620.85 36954.1084 245989.2509 95252.4491
C57BL/6J m 344184.74 23371.8303 391851.9021 296517.5779
CXB12/HiAJ m 335684.35 36954.1084 411052.7509 260315.9491
CXB13/HiAJ m 396771.3667 30172.9031 458309.4083 335233.325
CXB1/ByJ m 217699.9667 30172.9031 279238.0083 156161.925
CXB2/ByJ m 205494.6 30172.9031 267032.6417 143956.5583
CXB3/ByJ m 272171.2 36954.1084 347539.6009 196802.7991
CXB4/ByJ m 208175.45 36954.1084 283543.8509 132807.0491
CXB6/ByJ m 339533.2667 30172.9031 401071.3083 277995.225
CXB7/ByJ m 199978.95 36954.1084 275347.3509 124610.5491
CXB8/HiAJ m 199181.5333 30172.9031 260719.575 137643.4917
CXB9/HiAJ m 161671.5667 30172.9031 223209.6083 100133.525
DBA/2J m 51710.7667 30172.9031 113248.8083 0.0




  GWAS USING LINEAR MIXED MODELS

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