Project measure / variable:   HMDPpheno6   creatine

ID, description, units MPD:50108   creatine   liver creatine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver creatine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means3785902   None
Median of the strain means3650027   None
SD of the strain means± 794474
Coefficient of variation (CV)0.210
Min–max range of strain means2041626   –   6034676   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 15168663600452.4 722317314307.256 3.0273 0.002
Residuals 34 8112337196960.95 238598152851.793


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 3889749.0 0.0   1   0.0 0.0 3889749.0, 3889749.0 0.13
A/J m 3633528.0 100440.0   2   71021.0 0.0276 3562507.0, 3704550.0 -0.19
AKR/J m 3528768.0 0.0   1   0.0 0.0 3528768.0, 3528768.0 -0.32
AXB10/PgnJ m 3435896.0 0.0   1   0.0 0.0 3435896.0, 3435896.0 -0.44
AXB12/PgnJ m 4343667.0 0.0   1   0.0 0.0 4343667.0, 4343667.0 0.7
AXB13/PgnJ m 3208336.0 0.0   1   0.0 0.0 3208336.0, 3208336.0 -0.73
AXB15/PgnJ m 3350263.0 0.0   1   0.0 0.0 3350263.0, 3350263.0 -0.55
AXB19a/PgnJ m 5464369.0 0.0   1   0.0 0.0 5464369.0, 5464369.0 2.11
AXB19b/PgnJ m 4794772.0 797711.0   2   564067.0 0.166 4230704.0, 5358838.0 1.27
AXB19/PgnJ m 4367597.0 0.0   1   0.0 0.0 4367597.0, 4367597.0 0.73
AXB1/PgnJ m 3784098.0 0.0   1   0.0 0.0 3784098.0, 3784098.0 0.0
AXB23/PgnJ m 2991528.0 0.0   1   0.0 0.0 2991528.0, 2991528.0 -1.0
AXB24/PgnJ m 4101146.0 485723.0   2   343458.0 0.118 3757688.0, 4444604.0 0.4
AXB2/PgnJ m 4321980.0 0.0   1   0.0 0.0 4321980.0, 4321980.0 0.67
AXB4/PgnJ m 3124598.0 0.0   1   0.0 0.0 3124598.0, 3124598.0 -0.83
AXB5/PgnJ m 3460490.0 0.0   1   0.0 0.0 3460490.0, 3460490.0 -0.41
AXB6/PgnJ m 3417358.0 0.0   1   0.0 0.0 3417358.0, 3417358.0 -0.46
AXB8/PgnJ m 5204054.0 0.0   1   0.0 0.0 5204054.0, 5204054.0 1.79
BALB/cJ m 4851602.0 620011.0   3 357964.0 0.128 4171593.0, 5385525.0 1.34
BTBR T+ Itpr3tf/J m 3809278.0 0.0   1   0.0 0.0 3809278.0, 3809278.0 0.03
BUB/BnJ m 3298048.0 0.0   1   0.0 0.0 3298048.0, 3298048.0 -0.61
BXA11/PgnJ m 3060154.0 0.0   1   0.0 0.0 3060154.0, 3060154.0 -0.91
BXA12/PgnJ m 2190415.0 0.0   1   0.0 0.0 2190415.0, 2190415.0 -2.01
BXA13/PgnJ m 3876126.0 0.0   1   0.0 0.0 3876126.0, 3876126.0 0.11
BXA14/PgnJ m 2185566.0 0.0   1   0.0 0.0 2185566.0, 2185566.0 -2.01
BXA16/PgnJ m 3505522.0 1391229.0   2   983748.0 0.397 2521774.0, 4489270.0 -0.35
BXA1/PgnJ m 3241446.0 0.0   1   0.0 0.0 3241446.0, 3241446.0 -0.69
BXA24/PgnJ m 2974833.0 0.0   1   0.0 0.0 2974833.0, 2974833.0 -1.02
BXA25/PgnJ m 2781393.0 0.0   1   0.0 0.0 2781393.0, 2781393.0 -1.26
BXA26/PgnJ m 3544990.0 0.0   1   0.0 0.0 3544990.0, 3544990.0 -0.3
BXA2/PgnJ m 3161262.0 0.0   1   0.0 0.0 3161262.0, 3161262.0 -0.79
BXA4/PgnJ m 2934992.0 0.0   1   0.0 0.0 2934992.0, 2934992.0 -1.07
BXA7/PgnJ m 4573813.0 0.0   1   0.0 0.0 4573813.0, 4573813.0 0.99
BXA8/PgnJ m 3913202.0 0.0   1   0.0 0.0 3913202.0, 3913202.0 0.16
BXD11/TyJ m 3578698.0 0.0   1   0.0 0.0 3578698.0, 3578698.0 -0.26
BXD12/TyJ m 3579926.0 0.0   1   0.0 0.0 3579926.0, 3579926.0 -0.26
BXD13/TyJ m 3530546.0 0.0   1   0.0 0.0 3530546.0, 3530546.0 -0.32
BXD14/TyJ m 3177863.0 0.0   1   0.0 0.0 3177863.0, 3177863.0 -0.77
BXD15/TyJ m 3095418.0 0.0   1   0.0 0.0 3095418.0, 3095418.0 -0.87
BXD18/TyJ m 5785748.0 0.0   1   0.0 0.0 5785748.0, 5785748.0 2.52
BXD19/TyJ m 3599783.0 303548.0   2   214641.0 0.0843 3385142.0, 3814424.0 -0.23
BXD1/TyJ m 4314571.0 0.0   1   0.0 0.0 4314571.0, 4314571.0 0.67
BXD20/TyJ m 3147887.0 0.0   1   0.0 0.0 3147887.0, 3147887.0 -0.8
BXD21/TyJ m 5712062.0 0.0   1   0.0 0.0 5712062.0, 5712062.0 2.42
BXD22/TyJ m 4534339.0 0.0   1   0.0 0.0 4534339.0, 4534339.0 0.94
BXD24/TyJ m 3711284.0 0.0   1   0.0 0.0 3711284.0, 3711284.0 -0.09
BXD24/TyJ-Cep290rd16/J m 4030585.0 0.0   1   0.0 0.0 4030585.0, 4030585.0 0.31
BXD28/TyJ m 3475955.0 83859.0   2   59297.0 0.0241 3416658.0, 3535252.0 -0.39
BXD29-Tlr4lps-2J/J m 5837202.0 0.0   1   0.0 0.0 5837202.0, 5837202.0 2.58
BXD2/TyJ m 3266558.0 0.0   1   0.0 0.0 3266558.0, 3266558.0 -0.65
BXD32/TyJ m 3063577.0 0.0   1   0.0 0.0 3063577.0, 3063577.0 -0.91
BXD33/TyJ m 3637236.0 0.0   1   0.0 0.0 3637236.0, 3637236.0 -0.19
BXD34/TyJ m 4957323.0 0.0   1   0.0 0.0 4957323.0, 4957323.0 1.47
BXD36/TyJ m 4361454.0 0.0   1   0.0 0.0 4361454.0, 4361454.0 0.72
BXD38/TyJ m 5031046.0 0.0   1   0.0 0.0 5031046.0, 5031046.0 1.57
BXD39/TyJ m 4050952.0 0.0   1   0.0 0.0 4050952.0, 4050952.0 0.33
BXD40/TyJ m 3227498.0 0.0   1   0.0 0.0 3227498.0, 3227498.0 -0.7
BXD42/TyJ m 4832030.0 0.0   1   0.0 0.0 4832030.0, 4832030.0 1.32
BXD5/TyJ m 4995318.0 0.0   1   0.0 0.0 4995318.0, 4995318.0 1.52
BXD6/TyJ m 3310068.0 0.0   1   0.0 0.0 3310068.0, 3310068.0 -0.6
BXD8/TyJ m 3363535.0 0.0   1   0.0 0.0 3363535.0, 3363535.0 -0.53
BXD9/TyJ m 4057702.0 0.0   1   0.0 0.0 4057702.0, 4057702.0 0.34
BXH10/TyJ m 5090144.0 0.0   1   0.0 0.0 5090144.0, 5090144.0 1.64
BXH19/TyJ m 2761972.0 0.0   1   0.0 0.0 2761972.0, 2761972.0 -1.29
BXH20/KccJ m 2778328.0 0.0   1   0.0 0.0 2778328.0, 2778328.0 -1.27
BXH22/KccJ m 3513166.0 0.0   1   0.0 0.0 3513166.0, 3513166.0 -0.34
BXH2/TyJ m 4028480.0 0.0   1   0.0 0.0 4028480.0, 4028480.0 0.31
BXH4/TyJ m 3080113.0 41502.0   2   29346.0 0.0135 3050766.0, 3109459.0 -0.89
BXH6/TyJ m 4956552.0 0.0   1   0.0 0.0 4956552.0, 4956552.0 1.47
BXH7/TyJ m 2871251.0 0.0   1   0.0 0.0 2871251.0, 2871251.0 -1.15
BXH8/TyJ m 3775452.0 0.0   1   0.0 0.0 3775452.0, 3775452.0 -0.01
BXH9/TyJ m 3142430.0 0.0   1   0.0 0.0 3142430.0, 3142430.0 -0.81
C3H/HeJ m 3823860.0 657700.0   2   465064.0 0.172 3358796.0, 4288924.0 0.05
C57BL/6J m 4611687.0 627112.0   5 280453.0 0.136 3857967.0, 5355676.0 1.04
C57L/J m 3660661.0 0.0   1   0.0 0.0 3660661.0, 3660661.0 -0.16
C58/J m 6034676.0 0.0   1   0.0 0.0 6034676.0, 6034676.0 2.83
CAST/EiJ m 4064960.0 0.0   1   0.0 0.0 4064960.0, 4064960.0 0.35
CBA/J m 3216423.0 0.0   1   0.0 0.0 3216423.0, 3216423.0 -0.72
CE/J m 4195886.0 0.0   1   0.0 0.0 4195886.0, 4195886.0 0.52
CXB11/HiAJ m 3566359.0 413902.0   2   292673.0 0.116 3273686.0, 3859032.0 -0.28
CXB12/HiAJ m 3761750.0 22081.0   2   15613.0 0.00587 3746137.0, 3777364.0 -0.03
CXB13/HiAJ m 3764461.0 393301.0   3 227073.0 0.104 3343264.0, 4122133.0 -0.03
CXB1/ByJ m 3482224.0 326221.0   3 188344.0 0.0937 3258929.0, 3856597.0 -0.38
CXB2/ByJ m 3457062.0 516226.0   3 298043.0 0.149 2916621.0, 3945071.0 -0.41
CXB3/ByJ m 3712410.0 42570.0   2   30101.0 0.0115 3682308.0, 3742511.0 -0.09
CXB4/ByJ m 4122109.0 380994.0   2   269404.0 0.0924 3852706.0, 4391512.0 0.42
CXB6/ByJ m 4702378.0 386138.0   3 222937.0 0.0821 4297261.0, 5066221.0 1.15
CXB7/ByJ m 2913105.0 13641.0   2   9646.0 0.00468 2903460.0, 2922750.0 -1.1
CXB8/HiAJ m 3640656.0 369755.0   3 213478.0 0.102 3216014.0, 3891425.0 -0.18
CXB9/HiAJ m 3907365.0 422477.0   3 243917.0 0.108 3455712.0, 4292860.0 0.15
DBA/2J m 3659398.0 196911.0   4 98456.0 0.0538 3493844.0, 3945121.0 -0.16
FVB/NJ m 2189908.0 0.0   1   0.0 0.0 2189908.0, 2189908.0 -2.01
I/LnJ m 2956325.0 0.0   1   0.0 0.0 2956325.0, 2956325.0 -1.04
KK/HlJ m 4852849.0 0.0   1   0.0 0.0 4852849.0, 4852849.0 1.34
LG/J m 4182257.0 0.0   1   0.0 0.0 4182257.0, 4182257.0 0.5
LP/J m 4057746.0 0.0   1   0.0 0.0 4057746.0, 4057746.0 0.34
MA/MyJ m 3382313.0 0.0   1   0.0 0.0 3382313.0, 3382313.0 -0.51
NOD/ShiLtJ m 2925851.0 0.0   1   0.0 0.0 2925851.0, 2925851.0 -1.08
NON/ShiLtJ m 4349928.0 0.0   1   0.0 0.0 4349928.0, 4349928.0 0.71
NZW/LacJ m 4118834.0 0.0   1   0.0 0.0 4118834.0, 4118834.0 0.42
PL/J m 3864035.0 0.0   1   0.0 0.0 3864035.0, 3864035.0 0.1
RIIIS/J m 3890411.0 0.0   1   0.0 0.0 3890411.0, 3890411.0 0.13
SEA/GnJ m 3322649.0 0.0   1   0.0 0.0 3322649.0, 3322649.0 -0.58
SJL/J m 2041626.0 0.0   1   0.0 0.0 2041626.0, 2041626.0 -2.2
SM/J m 3571386.0 0.0   1   0.0 0.0 3571386.0, 3571386.0 -0.27
SWR/J m 3713196.0 0.0   1   0.0 0.0 3713196.0, 3713196.0 -0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 3633528.5 345396.9838 4335459.6239 2931597.3761
AXB19b/PgnJ m 4794771.5 345396.9838 5496702.6239 4092840.3761
AXB24/PgnJ m 4101146.25 345396.9838 4803077.3739 3399215.1261
BALB/cJ m 4851602.2667 282015.4563 5424726.6294 4278477.904
BXA16/PgnJ m 3505521.75 345396.9838 4207452.8739 2803590.6261
BXD19/TyJ m 3599782.9 345396.9838 4301714.0239 2897851.7761
BXD28/TyJ m 3475955.15 345396.9838 4177886.2739 2774024.0261
BXH4/TyJ m 3080112.9 345396.9838 3782044.0239 2378181.7761
C3H/HeJ m 3823859.75 345396.9838 4525790.8739 3121928.6261
C57BL/6J m 4611687.26 218448.2332 5055627.4824 4167747.0376
CXB11/HiAJ m 3566358.9 345396.9838 4268290.0239 2864427.7761
CXB12/HiAJ m 3761750.15 345396.9838 4463681.2739 3059819.0261
CXB13/HiAJ m 3764461.3667 282015.4563 4337585.7294 3191337.004
CXB1/ByJ m 3482223.8667 282015.4563 4055348.2294 2909099.504
CXB2/ByJ m 3457061.7 282015.4563 4030186.0627 2883937.3373
CXB3/ByJ m 3712409.75 345396.9838 4414340.8739 3010478.6261
CXB4/ByJ m 4122109.0 345396.9838 4824040.1239 3420177.8761
CXB6/ByJ m 4702378.3333 282015.4563 5275502.696 4129253.9706
CXB7/ByJ m 2913105.0 345396.9838 3615036.1239 2211173.8761
CXB8/HiAJ m 3640655.6667 282015.4563 4213780.0294 3067531.304
CXB9/HiAJ m 3907364.5333 282015.4563 4480488.896 3334240.1706
DBA/2J m 3659398.4 244232.5495 4155738.6576 3163058.1424




  GWAS USING LINEAR MIXED MODELS