Project measure / variable:   HMDPpheno6   creatine

ID, description, units MPD:50108   creatine   liver creatine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver creatine (16h fast), relative abundance

C58/JBXD29-Tlr4<lps-2J>/JBXD18/TyJBXD21/TyJAXB19a/PgnJAXB8/PgnJBXH10/TyJBXD38/TyJBXD5/TyJBXD34/TyJBXH6/TyJKK/HlJBALB/cJBXD42/TyJAXB19b/PgnJCXB6/ByJC57BL/6JBXA7/PgnJBXD22/TyJAXB19/PgnJBXD36/TyJNON/ShiLtJAXB12/PgnJAXB2/PgnJBXD1/TyJCE/JLG/JCXB4/ByJNZW/LacJAXB24/PgnJCAST/EiJLP/JBXD9/TyJBXD39/TyJBXD24/TyJ-Cep290<rd16>/JBXH2/TyJBXA8/PgnJCXB9/HiAJRIIIS/J129X1/SvJBXA13/PgnJPL/JC3H/HeJBTBR T<+> Itpr3<tf>/JAXB1/PgnJBXH8/TyJCXB13/HiAJCXB12/HiAJSWR/JCXB3/ByJBXD24/TyJC57L/JDBA/2JCXB8/HiAJBXD33/TyJA/JBXD19/TyJBXD12/TyJBXD11/TyJSM/JCXB11/HiAJBXA26/PgnJBXD13/TyJAKR/JBXH22/KccJBXA16/PgnJCXB1/ByJBXD28/TyJAXB5/PgnJCXB2/ByJAXB10/PgnJAXB6/PgnJMA/MyJBXD8/TyJAXB15/PgnJSEA/GnJBXD6/TyJBUB/BnJBXD2/TyJBXA1/PgnJBXD40/TyJCBA/JAXB13/PgnJBXD14/TyJBXA2/PgnJBXD20/TyJBXH9/TyJAXB4/PgnJBXD15/TyJBXH4/TyJBXD32/TyJBXA11/PgnJAXB23/PgnJBXA24/PgnJI/LnJBXA4/PgnJNOD/ShiLtJCXB7/ByJBXH7/TyJBXA25/PgnJBXH20/KccJBXH19/TyJBXA12/PgnJFVB/NJBXA14/PgnJSJL/J (no units) 2,000,0002,500,0003,000,0003,500,0004,000,0004,500,0005,000,0005,500,0006,000,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means3785902   None
Median of the strain means3650027   None
SD of the strain means± 794474
Coefficient of variation (CV)0.210
Min–max range of strain means2041626   –   6034676   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 15168663600452.4 722317314307.256 3.0273 0.002
Residuals 34 8112337196960.95 238598152851.793


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 3889749.0 0.0   1   0.0 0.0 3889749.0, 3889749.0 0.13
A/J m 3633528.0 100440.0   2   71021.0 0.0276 3562507.0, 3704550.0 -0.19
AKR/J m 3528768.0 0.0   1   0.0 0.0 3528768.0, 3528768.0 -0.32
AXB10/PgnJ m 3435896.0 0.0   1   0.0 0.0 3435896.0, 3435896.0 -0.44
AXB12/PgnJ m 4343667.0 0.0   1   0.0 0.0 4343667.0, 4343667.0 0.7
AXB13/PgnJ m 3208336.0 0.0   1   0.0 0.0 3208336.0, 3208336.0 -0.73
AXB15/PgnJ m 3350263.0 0.0   1   0.0 0.0 3350263.0, 3350263.0 -0.55
AXB19a/PgnJ m 5464369.0 0.0   1   0.0 0.0 5464369.0, 5464369.0 2.11
AXB19b/PgnJ m 4794772.0 797711.0   2   564067.0 0.166 4230704.0, 5358838.0 1.27
AXB19/PgnJ m 4367597.0 0.0   1   0.0 0.0 4367597.0, 4367597.0 0.73
AXB1/PgnJ m 3784098.0 0.0   1   0.0 0.0 3784098.0, 3784098.0 0.0
AXB23/PgnJ m 2991528.0 0.0   1   0.0 0.0 2991528.0, 2991528.0 -1.0
AXB24/PgnJ m 4101146.0 485723.0   2   343458.0 0.118 3757688.0, 4444604.0 0.4
AXB2/PgnJ m 4321980.0 0.0   1   0.0 0.0 4321980.0, 4321980.0 0.67
AXB4/PgnJ m 3124598.0 0.0   1   0.0 0.0 3124598.0, 3124598.0 -0.83
AXB5/PgnJ m 3460490.0 0.0   1   0.0 0.0 3460490.0, 3460490.0 -0.41
AXB6/PgnJ m 3417358.0 0.0   1   0.0 0.0 3417358.0, 3417358.0 -0.46
AXB8/PgnJ m 5204054.0 0.0   1   0.0 0.0 5204054.0, 5204054.0 1.79
BALB/cJ m 4851602.0 620011.0   3 357964.0 0.128 4171593.0, 5385525.0 1.34
BTBR T+ Itpr3tf/J m 3809278.0 0.0   1   0.0 0.0 3809278.0, 3809278.0 0.03
BUB/BnJ m 3298048.0 0.0   1   0.0 0.0 3298048.0, 3298048.0 -0.61
BXA11/PgnJ m 3060154.0 0.0   1   0.0 0.0 3060154.0, 3060154.0 -0.91
BXA12/PgnJ m 2190415.0 0.0   1   0.0 0.0 2190415.0, 2190415.0 -2.01
BXA13/PgnJ m 3876126.0 0.0   1   0.0 0.0 3876126.0, 3876126.0 0.11
BXA14/PgnJ m 2185566.0 0.0   1   0.0 0.0 2185566.0, 2185566.0 -2.01
BXA16/PgnJ m 3505522.0 1391229.0   2   983748.0 0.397 2521774.0, 4489270.0 -0.35
BXA1/PgnJ m 3241446.0 0.0   1   0.0 0.0 3241446.0, 3241446.0 -0.69
BXA24/PgnJ m 2974833.0 0.0   1   0.0 0.0 2974833.0, 2974833.0 -1.02
BXA25/PgnJ m 2781393.0 0.0   1   0.0 0.0 2781393.0, 2781393.0 -1.26
BXA26/PgnJ m 3544990.0 0.0   1   0.0 0.0 3544990.0, 3544990.0 -0.3
BXA2/PgnJ m 3161262.0 0.0   1   0.0 0.0 3161262.0, 3161262.0 -0.79
BXA4/PgnJ m 2934992.0 0.0   1   0.0 0.0 2934992.0, 2934992.0 -1.07
BXA7/PgnJ m 4573813.0 0.0   1   0.0 0.0 4573813.0, 4573813.0 0.99
BXA8/PgnJ m 3913202.0 0.0   1   0.0 0.0 3913202.0, 3913202.0 0.16
BXD11/TyJ m 3578698.0 0.0   1   0.0 0.0 3578698.0, 3578698.0 -0.26
BXD12/TyJ m 3579926.0 0.0   1   0.0 0.0 3579926.0, 3579926.0 -0.26
BXD13/TyJ m 3530546.0 0.0   1   0.0 0.0 3530546.0, 3530546.0 -0.32
BXD14/TyJ m 3177863.0 0.0   1   0.0 0.0 3177863.0, 3177863.0 -0.77
BXD15/TyJ m 3095418.0 0.0   1   0.0 0.0 3095418.0, 3095418.0 -0.87
BXD18/TyJ m 5785748.0 0.0   1   0.0 0.0 5785748.0, 5785748.0 2.52
BXD19/TyJ m 3599783.0 303548.0   2   214641.0 0.0843 3385142.0, 3814424.0 -0.23
BXD1/TyJ m 4314571.0 0.0   1   0.0 0.0 4314571.0, 4314571.0 0.67
BXD20/TyJ m 3147887.0 0.0   1   0.0 0.0 3147887.0, 3147887.0 -0.8
BXD21/TyJ m 5712062.0 0.0   1   0.0 0.0 5712062.0, 5712062.0 2.42
BXD22/TyJ m 4534339.0 0.0   1   0.0 0.0 4534339.0, 4534339.0 0.94
BXD24/TyJ m 3711284.0 0.0   1   0.0 0.0 3711284.0, 3711284.0 -0.09
BXD24/TyJ-Cep290rd16/J m 4030585.0 0.0   1   0.0 0.0 4030585.0, 4030585.0 0.31
BXD28/TyJ m 3475955.0 83859.0   2   59297.0 0.0241 3416658.0, 3535252.0 -0.39
BXD29-Tlr4lps-2J/J m 5837202.0 0.0   1   0.0 0.0 5837202.0, 5837202.0 2.58
BXD2/TyJ m 3266558.0 0.0   1   0.0 0.0 3266558.0, 3266558.0 -0.65
BXD32/TyJ m 3063577.0 0.0   1   0.0 0.0 3063577.0, 3063577.0 -0.91
BXD33/TyJ m 3637236.0 0.0   1   0.0 0.0 3637236.0, 3637236.0 -0.19
BXD34/TyJ m 4957323.0 0.0   1   0.0 0.0 4957323.0, 4957323.0 1.47
BXD36/TyJ m 4361454.0 0.0   1   0.0 0.0 4361454.0, 4361454.0 0.72
BXD38/TyJ m 5031046.0 0.0   1   0.0 0.0 5031046.0, 5031046.0 1.57
BXD39/TyJ m 4050952.0 0.0   1   0.0 0.0 4050952.0, 4050952.0 0.33
BXD40/TyJ m 3227498.0 0.0   1   0.0 0.0 3227498.0, 3227498.0 -0.7
BXD42/TyJ m 4832030.0 0.0   1   0.0 0.0 4832030.0, 4832030.0 1.32
BXD5/TyJ m 4995318.0 0.0   1   0.0 0.0 4995318.0, 4995318.0 1.52
BXD6/TyJ m 3310068.0 0.0   1   0.0 0.0 3310068.0, 3310068.0 -0.6
BXD8/TyJ m 3363535.0 0.0   1   0.0 0.0 3363535.0, 3363535.0 -0.53
BXD9/TyJ m 4057702.0 0.0   1   0.0 0.0 4057702.0, 4057702.0 0.34
BXH10/TyJ m 5090144.0 0.0   1   0.0 0.0 5090144.0, 5090144.0 1.64
BXH19/TyJ m 2761972.0 0.0   1   0.0 0.0 2761972.0, 2761972.0 -1.29
BXH20/KccJ m 2778328.0 0.0   1   0.0 0.0 2778328.0, 2778328.0 -1.27
BXH22/KccJ m 3513166.0 0.0   1   0.0 0.0 3513166.0, 3513166.0 -0.34
BXH2/TyJ m 4028480.0 0.0   1   0.0 0.0 4028480.0, 4028480.0 0.31
BXH4/TyJ m 3080113.0 41502.0   2   29346.0 0.0135 3050766.0, 3109459.0 -0.89
BXH6/TyJ m 4956552.0 0.0   1   0.0 0.0 4956552.0, 4956552.0 1.47
BXH7/TyJ m 2871251.0 0.0   1   0.0 0.0 2871251.0, 2871251.0 -1.15
BXH8/TyJ m 3775452.0 0.0   1   0.0 0.0 3775452.0, 3775452.0 -0.01
BXH9/TyJ m 3142430.0 0.0   1   0.0 0.0 3142430.0, 3142430.0 -0.81
C3H/HeJ m 3823860.0 657700.0   2   465064.0 0.172 3358796.0, 4288924.0 0.05
C57BL/6J m 4611687.0 627112.0   5 280453.0 0.136 3857967.0, 5355676.0 1.04
C57L/J m 3660661.0 0.0   1   0.0 0.0 3660661.0, 3660661.0 -0.16
C58/J m 6034676.0 0.0   1   0.0 0.0 6034676.0, 6034676.0 2.83
CAST/EiJ m 4064960.0 0.0   1   0.0 0.0 4064960.0, 4064960.0 0.35
CBA/J m 3216423.0 0.0   1   0.0 0.0 3216423.0, 3216423.0 -0.72
CE/J m 4195886.0 0.0   1   0.0 0.0 4195886.0, 4195886.0 0.52
CXB11/HiAJ m 3566359.0 413902.0   2   292673.0 0.116 3273686.0, 3859032.0 -0.28
CXB12/HiAJ m 3761750.0 22081.0   2   15613.0 0.00587 3746137.0, 3777364.0 -0.03
CXB13/HiAJ m 3764461.0 393301.0   3 227073.0 0.104 3343264.0, 4122133.0 -0.03
CXB1/ByJ m 3482224.0 326221.0   3 188344.0 0.0937 3258929.0, 3856597.0 -0.38
CXB2/ByJ m 3457062.0 516226.0   3 298043.0 0.149 2916621.0, 3945071.0 -0.41
CXB3/ByJ m 3712410.0 42570.0   2   30101.0 0.0115 3682308.0, 3742511.0 -0.09
CXB4/ByJ m 4122109.0 380994.0   2   269404.0 0.0924 3852706.0, 4391512.0 0.42
CXB6/ByJ m 4702378.0 386138.0   3 222937.0 0.0821 4297261.0, 5066221.0 1.15
CXB7/ByJ m 2913105.0 13641.0   2   9646.0 0.00468 2903460.0, 2922750.0 -1.1
CXB8/HiAJ m 3640656.0 369755.0   3 213478.0 0.102 3216014.0, 3891425.0 -0.18
CXB9/HiAJ m 3907365.0 422477.0   3 243917.0 0.108 3455712.0, 4292860.0 0.15
DBA/2J m 3659398.0 196911.0   4 98456.0 0.0538 3493844.0, 3945121.0 -0.16
FVB/NJ m 2189908.0 0.0   1   0.0 0.0 2189908.0, 2189908.0 -2.01
I/LnJ m 2956325.0 0.0   1   0.0 0.0 2956325.0, 2956325.0 -1.04
KK/HlJ m 4852849.0 0.0   1   0.0 0.0 4852849.0, 4852849.0 1.34
LG/J m 4182257.0 0.0   1   0.0 0.0 4182257.0, 4182257.0 0.5
LP/J m 4057746.0 0.0   1   0.0 0.0 4057746.0, 4057746.0 0.34
MA/MyJ m 3382313.0 0.0   1   0.0 0.0 3382313.0, 3382313.0 -0.51
NOD/ShiLtJ m 2925851.0 0.0   1   0.0 0.0 2925851.0, 2925851.0 -1.08
NON/ShiLtJ m 4349928.0 0.0   1   0.0 0.0 4349928.0, 4349928.0 0.71
NZW/LacJ m 4118834.0 0.0   1   0.0 0.0 4118834.0, 4118834.0 0.42
PL/J m 3864035.0 0.0   1   0.0 0.0 3864035.0, 3864035.0 0.1
RIIIS/J m 3890411.0 0.0   1   0.0 0.0 3890411.0, 3890411.0 0.13
SEA/GnJ m 3322649.0 0.0   1   0.0 0.0 3322649.0, 3322649.0 -0.58
SJL/J m 2041626.0 0.0   1   0.0 0.0 2041626.0, 2041626.0 -2.2
SM/J m 3571386.0 0.0   1   0.0 0.0 3571386.0, 3571386.0 -0.27
SWR/J m 3713196.0 0.0   1   0.0 0.0 3713196.0, 3713196.0 -0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 3633528.5 345396.9838 4335459.6239 2931597.3761
AXB19b/PgnJ m 4794771.5 345396.9838 5496702.6239 4092840.3761
AXB24/PgnJ m 4101146.25 345396.9838 4803077.3739 3399215.1261
BALB/cJ m 4851602.2667 282015.4563 5424726.6294 4278477.904
BXA16/PgnJ m 3505521.75 345396.9838 4207452.8739 2803590.6261
BXD19/TyJ m 3599782.9 345396.9838 4301714.0239 2897851.7761
BXD28/TyJ m 3475955.15 345396.9838 4177886.2739 2774024.0261
BXH4/TyJ m 3080112.9 345396.9838 3782044.0239 2378181.7761
C3H/HeJ m 3823859.75 345396.9838 4525790.8739 3121928.6261
C57BL/6J m 4611687.26 218448.2332 5055627.4824 4167747.0376
CXB11/HiAJ m 3566358.9 345396.9838 4268290.0239 2864427.7761
CXB12/HiAJ m 3761750.15 345396.9838 4463681.2739 3059819.0261
CXB13/HiAJ m 3764461.3667 282015.4563 4337585.7294 3191337.004
CXB1/ByJ m 3482223.8667 282015.4563 4055348.2294 2909099.504
CXB2/ByJ m 3457061.7 282015.4563 4030186.0627 2883937.3373
CXB3/ByJ m 3712409.75 345396.9838 4414340.8739 3010478.6261
CXB4/ByJ m 4122109.0 345396.9838 4824040.1239 3420177.8761
CXB6/ByJ m 4702378.3333 282015.4563 5275502.696 4129253.9706
CXB7/ByJ m 2913105.0 345396.9838 3615036.1239 2211173.8761
CXB8/HiAJ m 3640655.6667 282015.4563 4213780.0294 3067531.304
CXB9/HiAJ m 3907364.5333 282015.4563 4480488.896 3334240.1706
DBA/2J m 3659398.4 244232.5495 4155738.6576 3163058.1424




  GWAS USING LINEAR MIXED MODELS

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