Project measure / variable:   HMDPpheno6   aminobutyrate

ID, description, units MPD:50107   aminobutyrate   liver 2-aminobutyrate (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver 2-aminobutyrate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1689857   None
Median of the strain means1442330   None
SD of the strain means± 1135864
Coefficient of variation (CV)0.672
Min–max range of strain means444653   –   7407278   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 46476247508228.0 2213154643248.95 18.2436 < 0.0001
Residuals 34 4124593878904.96 121311584673.675


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1438619.0 0.0   1   0.0 0.0 1438619.0, 1438619.0 -0.22
A/J m 1503823.0 373467.0   2   264081.0 0.248 1239742.0, 1767904.0 -0.16
AKR/J m 2078669.0 0.0   1   0.0 0.0 2078669.0, 2078669.0 0.34
AXB10/PgnJ m 1063687.0 0.0   1   0.0 0.0 1063687.0, 1063687.0 -0.55
AXB12/PgnJ m 2807178.0 0.0   1   0.0 0.0 2807178.0, 2807178.0 0.98
AXB13/PgnJ m 1104450.0 0.0   1   0.0 0.0 1104450.0, 1104450.0 -0.52
AXB15/PgnJ m 2706922.0 0.0   1   0.0 0.0 2706922.0, 2706922.0 0.9
AXB19a/PgnJ m 1425919.0 0.0   1   0.0 0.0 1425919.0, 1425919.0 -0.23
AXB19b/PgnJ m 1118960.0 396039.0   2   280042.0 0.354 838918.0, 1399002.0 -0.5
AXB19/PgnJ m 884429.0 0.0   1   0.0 0.0 884429.0, 884429.0 -0.71
AXB1/PgnJ m 6197248.0 0.0   1   0.0 0.0 6197248.0, 6197248.0 3.97
AXB23/PgnJ m 1041337.0 0.0   1   0.0 0.0 1041337.0, 1041337.0 -0.57
AXB24/PgnJ m 1224622.0 551105.0   2   389690.0 0.45 834931.0, 1614312.0 -0.41
AXB2/PgnJ m 3994235.0 0.0   1   0.0 0.0 3994235.0, 3994235.0 2.03
AXB4/PgnJ m 3392046.0 0.0   1   0.0 0.0 3392046.0, 3392046.0 1.5
AXB5/PgnJ m 3291913.0 0.0   1   0.0 0.0 3291913.0, 3291913.0 1.41
AXB6/PgnJ m 2151129.0 0.0   1   0.0 0.0 2151129.0, 2151129.0 0.41
AXB8/PgnJ m 2203493.0 0.0   1   0.0 0.0 2203493.0, 2203493.0 0.45
BALB/cJ m 1372773.0 126263.0   3 72898.0 0.092 1246733.0, 1499258.0 -0.28
BTBR T+ Itpr3tf/J m 934370.0 0.0   1   0.0 0.0 934370.0, 934370.0 -0.67
BUB/BnJ m 2133507.0 0.0   1   0.0 0.0 2133507.0, 2133507.0 0.39
BXA11/PgnJ m 1541965.0 0.0   1   0.0 0.0 1541965.0, 1541965.0 -0.13
BXA12/PgnJ m 2780427.0 0.0   1   0.0 0.0 2780427.0, 2780427.0 0.96
BXA13/PgnJ m 754598.0 0.0   1   0.0 0.0 754598.0, 754598.0 -0.82
BXA14/PgnJ m 1527440.0 0.0   1   0.0 0.0 1527440.0, 1527440.0 -0.14
BXA16/PgnJ m 1025627.0 476790.0   2   337142.0 0.465 688486.0, 1362769.0 -0.58
BXA1/PgnJ m 597929.0 0.0   1   0.0 0.0 597929.0, 597929.0 -0.96
BXA24/PgnJ m 2803503.0 0.0   1   0.0 0.0 2803503.0, 2803503.0 0.98
BXA25/PgnJ m 935773.0 0.0   1   0.0 0.0 935773.0, 935773.0 -0.66
BXA26/PgnJ m 5332632.0 0.0   1   0.0 0.0 5332632.0, 5332632.0 3.21
BXA2/PgnJ m 2239941.0 0.0   1   0.0 0.0 2239941.0, 2239941.0 0.48
BXA4/PgnJ m 1786133.0 0.0   1   0.0 0.0 1786133.0, 1786133.0 0.08
BXA7/PgnJ m 1589439.0 0.0   1   0.0 0.0 1589439.0, 1589439.0 -0.09
BXA8/PgnJ m 700375.0 0.0   1   0.0 0.0 700375.0, 700375.0 -0.87
BXD11/TyJ m 1860260.0 0.0   1   0.0 0.0 1860260.0, 1860260.0 0.15
BXD12/TyJ m 1025176.0 0.0   1   0.0 0.0 1025176.0, 1025176.0 -0.59
BXD13/TyJ m 1517866.0 0.0   1   0.0 0.0 1517866.0, 1517866.0 -0.15
BXD14/TyJ m 1084364.0 0.0   1   0.0 0.0 1084364.0, 1084364.0 -0.53
BXD15/TyJ m 1973561.0 0.0   1   0.0 0.0 1973561.0, 1973561.0 0.25
BXD18/TyJ m 1474136.0 0.0   1   0.0 0.0 1474136.0, 1474136.0 -0.19
BXD19/TyJ m 1354066.0 322046.0   2   227721.0 0.238 1126345.0, 1581787.0 -0.3
BXD1/TyJ m 599979.0 0.0   1   0.0 0.0 599979.0, 599979.0 -0.96
BXD20/TyJ m 1946550.0 0.0   1   0.0 0.0 1946550.0, 1946550.0 0.23
BXD21/TyJ m 496729.0 0.0   1   0.0 0.0 496729.0, 496729.0 -1.05
BXD22/TyJ m 1318291.0 0.0   1   0.0 0.0 1318291.0, 1318291.0 -0.33
BXD24/TyJ m 1476541.0 0.0   1   0.0 0.0 1476541.0, 1476541.0 -0.19
BXD24/TyJ-Cep290rd16/J m 1522574.0 0.0   1   0.0 0.0 1522574.0, 1522574.0 -0.15
BXD28/TyJ m 1885367.0 556053.0   2   393189.0 0.295 1492178.0, 2278556.0 0.17
BXD29-Tlr4lps-2J/J m 780513.0 0.0   1   0.0 0.0 780513.0, 780513.0 -0.8
BXD2/TyJ m 1446042.0 0.0   1   0.0 0.0 1446042.0, 1446042.0 -0.21
BXD32/TyJ m 3397182.0 0.0   1   0.0 0.0 3397182.0, 3397182.0 1.5
BXD33/TyJ m 3971442.0 0.0   1   0.0 0.0 3971442.0, 3971442.0 2.01
BXD34/TyJ m 1556282.0 0.0   1   0.0 0.0 1556282.0, 1556282.0 -0.12
BXD36/TyJ m 1701399.0 0.0   1   0.0 0.0 1701399.0, 1701399.0 0.01
BXD38/TyJ m 535322.0 0.0   1   0.0 0.0 535322.0, 535322.0 -1.02
BXD39/TyJ m 511786.0 0.0   1   0.0 0.0 511786.0, 511786.0 -1.04
BXD40/TyJ m 1562024.0 0.0   1   0.0 0.0 1562024.0, 1562024.0 -0.11
BXD42/TyJ m 755419.0 0.0   1   0.0 0.0 755419.0, 755419.0 -0.82
BXD5/TyJ m 1348547.0 0.0   1   0.0 0.0 1348547.0, 1348547.0 -0.3
BXD6/TyJ m 1228632.0 0.0   1   0.0 0.0 1228632.0, 1228632.0 -0.41
BXD8/TyJ m 618969.0 0.0   1   0.0 0.0 618969.0, 618969.0 -0.94
BXD9/TyJ m 1149028.0 0.0   1   0.0 0.0 1149028.0, 1149028.0 -0.48
BXH10/TyJ m 1216670.0 0.0   1   0.0 0.0 1216670.0, 1216670.0 -0.42
BXH19/TyJ m 1796619.0 0.0   1   0.0 0.0 1796619.0, 1796619.0 0.09
BXH20/KccJ m 1026063.0 0.0   1   0.0 0.0 1026063.0, 1026063.0 -0.58
BXH22/KccJ m 1031281.0 0.0   1   0.0 0.0 1031281.0, 1031281.0 -0.58
BXH2/TyJ m 1428512.0 0.0   1   0.0 0.0 1428512.0, 1428512.0 -0.23
BXH4/TyJ m 912794.0 117152.0   2   82839.0 0.128 829955.0, 995633.0 -0.68
BXH6/TyJ m 2394092.0 0.0   1   0.0 0.0 2394092.0, 2394092.0 0.62
BXH7/TyJ m 1923280.0 0.0   1   0.0 0.0 1923280.0, 1923280.0 0.21
BXH8/TyJ m 1725222.0 0.0   1   0.0 0.0 1725222.0, 1725222.0 0.03
BXH9/TyJ m 977177.0 0.0   1   0.0 0.0 977177.0, 977177.0 -0.63
C3H/HeJ m 1509521.0 289401.0   2   204637.0 0.192 1304883.0, 1714158.0 -0.16
C57BL/6J m 3470080.0 579112.0   5 258987.0 0.167 2751574.0, 4119236.0 1.57
C57L/J m 1325754.0 0.0   1   0.0 0.0 1325754.0, 1325754.0 -0.32
C58/J m 3485485.0 0.0   1   0.0 0.0 3485485.0, 3485485.0 1.58
CAST/EiJ m 938362.0 0.0   1   0.0 0.0 938362.0, 938362.0 -0.66
CBA/J m 1625379.0 0.0   1   0.0 0.0 1625379.0, 1625379.0 -0.06
CE/J m 1448311.0 0.0   1   0.0 0.0 1448311.0, 1448311.0 -0.21
CXB11/HiAJ m 656279.0 68654.0   2   48546.0 0.105 607733.0, 704825.0 -0.91
CXB12/HiAJ m 2943727.0 146476.0   2   103574.0 0.0498 2840153.0, 3047301.0 1.1
CXB13/HiAJ m 2397987.0 401208.0   3 231637.0 0.167 1961030.0, 2749764.0 0.62
CXB1/ByJ m 1064146.0 300642.0   3 173576.0 0.283 755637.0, 1356249.0 -0.55
CXB2/ByJ m 1592147.0 277991.0   3 160498.0 0.175 1427401.0, 1913105.0 -0.09
CXB3/ByJ m 1603097.0 213557.0   2   151008.0 0.133 1452090.0, 1754105.0 -0.08
CXB4/ByJ m 1053467.0 131961.0   2   93310.0 0.125 960156.0, 1146777.0 -0.56
CXB6/ByJ m 3669084.0 276030.0   3 159366.0 0.0752 3432860.0, 3972510.0 1.74
CXB7/ByJ m 1381936.0 327943.0   2   231891.0 0.237 1150045.0, 1613827.0 -0.27
CXB8/HiAJ m 987919.0 403547.0   3 232988.0 0.408 624950.0, 1422465.0 -0.62
CXB9/HiAJ m 1273398.0 175337.0   3 101231.0 0.138 1162664.0, 1475552.0 -0.37
DBA/2J m 691677.0 81439.0   4 40720.0 0.118 605228.0, 799528.0 -0.88
FVB/NJ m 1926990.0 0.0   1   0.0 0.0 1926990.0, 1926990.0 0.21
I/LnJ m 1447154.0 0.0   1   0.0 0.0 1447154.0, 1447154.0 -0.21
KK/HlJ m 507635.0 0.0   1   0.0 0.0 507635.0, 507635.0 -1.04
LG/J m 444653.0 0.0   1   0.0 0.0 444653.0, 444653.0 -1.1
LP/J m 1246583.0 0.0   1   0.0 0.0 1246583.0, 1246583.0 -0.39
MA/MyJ m 7407278.0 0.0   1   0.0 0.0 7407278.0, 7407278.0 5.03
NOD/ShiLtJ m 2110608.0 0.0   1   0.0 0.0 2110608.0, 2110608.0 0.37
NON/ShiLtJ m 1293468.0 0.0   1   0.0 0.0 1293468.0, 1293468.0 -0.35
NZW/LacJ m 735807.0 0.0   1   0.0 0.0 735807.0, 735807.0 -0.84
PL/J m 939718.0 0.0   1   0.0 0.0 939718.0, 939718.0 -0.66
RIIIS/J m 830355.0 0.0   1   0.0 0.0 830355.0, 830355.0 -0.76
SEA/GnJ m 1562884.0 0.0   1   0.0 0.0 1562884.0, 1562884.0 -0.11
SJL/J m 778967.0 0.0   1   0.0 0.0 778967.0, 778967.0 -0.8
SM/J m 972149.0 0.0   1   0.0 0.0 972149.0, 972149.0 -0.63
SWR/J m 1587938.0 0.0   1   0.0 0.0 1587938.0, 1587938.0 -0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1503822.6 246283.9669 2004331.8394 1003313.3606
AXB19b/PgnJ m 1118960.25 246283.9669 1619469.4894 618451.0106
AXB24/PgnJ m 1224621.65 246283.9669 1725130.8894 724112.4106
BALB/cJ m 1372773.4 201090.0169 1781437.4827 964109.3173
BXA16/PgnJ m 1025627.25 246283.9669 1526136.4894 525118.0106
BXD19/TyJ m 1354065.7 246283.9669 1854574.9394 853556.4606
BXD28/TyJ m 1885366.9 246283.9669 2385876.1394 1384857.6606
BXH4/TyJ m 912794.4 246283.9669 1413303.6394 412285.1606
C3H/HeJ m 1509520.65 246283.9669 2010029.8894 1009011.4106
C57BL/6J m 3470080.18 155763.6573 3786630.0173 3153530.3427
CXB11/HiAJ m 656278.75 246283.9669 1156787.9894 155769.5106
CXB12/HiAJ m 2943727.15 246283.9669 3444236.3894 2443217.9106
CXB13/HiAJ m 2397987.4333 201090.0169 2806651.516 1989323.3506
CXB1/ByJ m 1064145.7667 201090.0169 1472809.8494 655481.684
CXB2/ByJ m 1592147.3 201090.0169 2000811.3827 1183483.2173
CXB3/ByJ m 1603097.3 246283.9669 2103606.5394 1102588.0606
CXB4/ByJ m 1053466.8 246283.9669 1553976.0394 552957.5606
CXB6/ByJ m 3669084.2 201090.0169 4077748.2827 3260420.1173
CXB7/ByJ m 1381936.2 246283.9669 1882445.4394 881426.9606
CXB8/HiAJ m 987919.2 201090.0169 1396583.2827 579255.1173
CXB9/HiAJ m 1273397.6 201090.0169 1682061.6827 864733.5173
DBA/2J m 691677.175 174149.0631 1045590.6522 337763.6978




  GWAS USING LINEAR MIXED MODELS