Project measure / variable:   HMDPpheno6   beta_Ala

ID, description, units MPD:50104   beta_Ala   liver beta-alanine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver beta-alanine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means722928   None
Median of the strain means719930   None
SD of the strain means± 238253
Coefficient of variation (CV)0.330
Min–max range of strain means200291   –   1281468   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 3306482399953.17 157451542854.913 1.5624 0.1204
Residuals 34 3426309513611.28 100773809223.861


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 881544.0 0.0   1   0.0 0.0 881544.0, 881544.0 0.67
A/J m 519576.0 152564.0   2   107879.0 0.294 411697.0, 627455.0 -0.85
AKR/J m 495552.0 0.0   1   0.0 0.0 495552.0, 495552.0 -0.95
AXB10/PgnJ m 871092.0 0.0   1   0.0 0.0 871092.0, 871092.0 0.62
AXB12/PgnJ m 854345.0 0.0   1   0.0 0.0 854345.0, 854345.0 0.55
AXB13/PgnJ m 592879.0 0.0   1   0.0 0.0 592879.0, 592879.0 -0.55
AXB15/PgnJ m 305016.0 0.0   1   0.0 0.0 305016.0, 305016.0 -1.75
AXB19a/PgnJ m 590429.0 0.0   1   0.0 0.0 590429.0, 590429.0 -0.56
AXB19b/PgnJ m 579664.0 9380.0   2   6633.0 0.0162 573032.0, 586297.0 -0.6
AXB19/PgnJ m 506482.0 0.0   1   0.0 0.0 506482.0, 506482.0 -0.91
AXB1/PgnJ m 990420.0 0.0   1   0.0 0.0 990420.0, 990420.0 1.12
AXB23/PgnJ m 439564.0 0.0   1   0.0 0.0 439564.0, 439564.0 -1.19
AXB24/PgnJ m 686336.0 14630.0   2   10345.0 0.0213 675991.0, 696681.0 -0.15
AXB2/PgnJ m 838202.0 0.0   1   0.0 0.0 838202.0, 838202.0 0.48
AXB4/PgnJ m 547404.0 0.0   1   0.0 0.0 547404.0, 547404.0 -0.74
AXB5/PgnJ m 504798.0 0.0   1   0.0 0.0 504798.0, 504798.0 -0.92
AXB6/PgnJ m 567644.0 0.0   1   0.0 0.0 567644.0, 567644.0 -0.65
AXB8/PgnJ m 759490.0 0.0   1   0.0 0.0 759490.0, 759490.0 0.15
BALB/cJ m 834417.0 8582.0   3 4955.0 0.0103 828525.0, 844263.0 0.47
BTBR T+ Itpr3tf/J m 491696.0 0.0   1   0.0 0.0 491696.0, 491696.0 -0.97
BUB/BnJ m 718502.0 0.0   1   0.0 0.0 718502.0, 718502.0 -0.02
BXA11/PgnJ m 219959.0 0.0   1   0.0 0.0 219959.0, 219959.0 -2.11
BXA12/PgnJ m 589062.0 0.0   1   0.0 0.0 589062.0, 589062.0 -0.56
BXA13/PgnJ m 818188.0 0.0   1   0.0 0.0 818188.0, 818188.0 0.4
BXA14/PgnJ m 779919.0 0.0   1   0.0 0.0 779919.0, 779919.0 0.24
BXA16/PgnJ m 724515.0 39937.0   2   28240.0 0.0551 696275.0, 752754.0 0.01
BXA1/PgnJ m 660285.0 0.0   1   0.0 0.0 660285.0, 660285.0 -0.26
BXA24/PgnJ m 1054842.0 0.0   1   0.0 0.0 1054842.0, 1054842.0 1.39
BXA25/PgnJ m 604173.0 0.0   1   0.0 0.0 604173.0, 604173.0 -0.5
BXA26/PgnJ m 557012.0 0.0   1   0.0 0.0 557012.0, 557012.0 -0.7
BXA2/PgnJ m 814775.0 0.0   1   0.0 0.0 814775.0, 814775.0 0.39
BXA4/PgnJ m 558961.0 0.0   1   0.0 0.0 558961.0, 558961.0 -0.69
BXA7/PgnJ m 874806.0 0.0   1   0.0 0.0 874806.0, 874806.0 0.64
BXA8/PgnJ m 469875.0 0.0   1   0.0 0.0 469875.0, 469875.0 -1.06
BXD11/TyJ m 615443.0 0.0   1   0.0 0.0 615443.0, 615443.0 -0.45
BXD12/TyJ m 342100.0 0.0   1   0.0 0.0 342100.0, 342100.0 -1.6
BXD13/TyJ m 302800.0 0.0   1   0.0 0.0 302800.0, 302800.0 -1.76
BXD14/TyJ m 789715.0 0.0   1   0.0 0.0 789715.0, 789715.0 0.28
BXD15/TyJ m 200291.0 0.0   1   0.0 0.0 200291.0, 200291.0 -2.19
BXD18/TyJ m 634683.0 0.0   1   0.0 0.0 634683.0, 634683.0 -0.37
BXD19/TyJ m 518446.0 148970.0   2   105338.0 0.287 413108.0, 623784.0 -0.86
BXD1/TyJ m 515166.0 0.0   1   0.0 0.0 515166.0, 515166.0 -0.87
BXD20/TyJ m 920875.0 0.0   1   0.0 0.0 920875.0, 920875.0 0.83
BXD21/TyJ m 560793.0 0.0   1   0.0 0.0 560793.0, 560793.0 -0.68
BXD22/TyJ m 535765.0 0.0   1   0.0 0.0 535765.0, 535765.0 -0.79
BXD24/TyJ m 753320.0 0.0   1   0.0 0.0 753320.0, 753320.0 0.13
BXD24/TyJ-Cep290rd16/J m 464481.0 0.0   1   0.0 0.0 464481.0, 464481.0 -1.08
BXD28/TyJ m 592766.0 20628.0   2   14586.0 0.0348 578180.0, 607352.0 -0.55
BXD29-Tlr4lps-2J/J m 688808.0 0.0   1   0.0 0.0 688808.0, 688808.0 -0.14
BXD2/TyJ m 857448.0 0.0   1   0.0 0.0 857448.0, 857448.0 0.56
BXD32/TyJ m 1001662.0 0.0   1   0.0 0.0 1001662.0, 1001662.0 1.17
BXD33/TyJ m 1244428.0 0.0   1   0.0 0.0 1244428.0, 1244428.0 2.19
BXD34/TyJ m 944993.0 0.0   1   0.0 0.0 944993.0, 944993.0 0.93
BXD36/TyJ m 868323.0 0.0   1   0.0 0.0 868323.0, 868323.0 0.61
BXD38/TyJ m 730840.0 0.0   1   0.0 0.0 730840.0, 730840.0 0.03
BXD39/TyJ m 258506.0 0.0   1   0.0 0.0 258506.0, 258506.0 -1.95
BXD40/TyJ m 865164.0 0.0   1   0.0 0.0 865164.0, 865164.0 0.6
BXD42/TyJ m 519713.0 0.0   1   0.0 0.0 519713.0, 519713.0 -0.85
BXD5/TyJ m 732717.0 0.0   1   0.0 0.0 732717.0, 732717.0 0.04
BXD6/TyJ m 623431.0 0.0   1   0.0 0.0 623431.0, 623431.0 -0.42
BXD8/TyJ m 692517.0 0.0   1   0.0 0.0 692517.0, 692517.0 -0.13
BXD9/TyJ m 518474.0 0.0   1   0.0 0.0 518474.0, 518474.0 -0.86
BXH10/TyJ m 1006604.0 0.0   1   0.0 0.0 1006604.0, 1006604.0 1.19
BXH19/TyJ m 877843.0 0.0   1   0.0 0.0 877843.0, 877843.0 0.65
BXH20/KccJ m 627385.0 0.0   1   0.0 0.0 627385.0, 627385.0 -0.4
BXH22/KccJ m 681297.0 0.0   1   0.0 0.0 681297.0, 681297.0 -0.17
BXH2/TyJ m 837162.0 0.0   1   0.0 0.0 837162.0, 837162.0 0.48
BXH4/TyJ m 648132.0 61850.0   2   43734.0 0.0954 604397.0, 691866.0 -0.31
BXH6/TyJ m 1126071.0 0.0   1   0.0 0.0 1126071.0, 1126071.0 1.69
BXH7/TyJ m 930598.0 0.0   1   0.0 0.0 930598.0, 930598.0 0.87
BXH8/TyJ m 848479.0 0.0   1   0.0 0.0 848479.0, 848479.0 0.53
BXH9/TyJ m 663579.0 0.0   1   0.0 0.0 663579.0, 663579.0 -0.25
C3H/HeJ m 729394.0 219222.0   2   155014.0 0.301 574380.0, 884407.0 0.03
C57BL/6J m 1255816.0 333594.0   5 149188.0 0.266 941396.0, 1772099.0 2.24
C57L/J m 821572.0 0.0   1   0.0 0.0 821572.0, 821572.0 0.41
C58/J m 1275363.0 0.0   1   0.0 0.0 1275363.0, 1275363.0 2.32
CAST/EiJ m 652216.0 0.0   1   0.0 0.0 652216.0, 652216.0 -0.3
CBA/J m 573881.0 0.0   1   0.0 0.0 573881.0, 573881.0 -0.63
CE/J m 1184964.0 0.0   1   0.0 0.0 1184964.0, 1184964.0 1.94
CXB11/HiAJ m 678131.0 276679.0   2   195642.0 0.408 482489.0, 873772.0 -0.19
CXB12/HiAJ m 658152.0 188832.0   2   133524.0 0.287 524627.0, 791676.0 -0.27
CXB13/HiAJ m 1146136.0 852108.0   3 491965.0 0.743 412181.0, 2080627.0 1.78
CXB1/ByJ m 1225197.0 386521.0   3 223158.0 0.315 780672.0, 1482048.0 2.11
CXB2/ByJ m 766188.0 407949.0   3 235529.0 0.532 354046.0, 1169811.0 0.18
CXB3/ByJ m 965904.0 127895.0   2   90436.0 0.132 875468.0, 1056339.0 1.02
CXB4/ByJ m 1126702.0 519589.0   2   367405.0 0.461 759297.0, 1494106.0 1.69
CXB6/ByJ m 893412.0 153755.0   3 88771.0 0.172 731498.0, 1037446.0 0.72
CXB7/ByJ m 721359.0 3109.0   2   2198.0 0.00431 719161.0, 723557.0 -0.01
CXB8/HiAJ m 733229.0 407008.0   3 234986.0 0.555 439247.0, 1197768.0 0.04
CXB9/HiAJ m 898868.0 95238.0   3 54986.0 0.106 803097.0, 993564.0 0.74
DBA/2J m 493939.0 27373.0   4 13687.0 0.0554 462799.0, 524073.0 -0.96
FVB/NJ m 856985.0 0.0   1   0.0 0.0 856985.0, 856985.0 0.56
I/LnJ m 1281468.0 0.0   1   0.0 0.0 1281468.0, 1281468.0 2.34
KK/HlJ m 837371.0 0.0   1   0.0 0.0 837371.0, 837371.0 0.48
LG/J m 341102.0 0.0   1   0.0 0.0 341102.0, 341102.0 -1.6
LP/J m 467095.0 0.0   1   0.0 0.0 467095.0, 467095.0 -1.07
MA/MyJ m 754200.0 0.0   1   0.0 0.0 754200.0, 754200.0 0.13
NOD/ShiLtJ m 561167.0 0.0   1   0.0 0.0 561167.0, 561167.0 -0.68
NON/ShiLtJ m 989651.0 0.0   1   0.0 0.0 989651.0, 989651.0 1.12
NZW/LacJ m 299039.0 0.0   1   0.0 0.0 299039.0, 299039.0 -1.78
PL/J m 726444.0 0.0   1   0.0 0.0 726444.0, 726444.0 0.01
RIIIS/J m 635573.0 0.0   1   0.0 0.0 635573.0, 635573.0 -0.37
SEA/GnJ m 735337.0 0.0   1   0.0 0.0 735337.0, 735337.0 0.05
SJL/J m 762026.0 0.0   1   0.0 0.0 762026.0, 762026.0 0.16
SM/J m 632170.0 0.0   1   0.0 0.0 632170.0, 632170.0 -0.38
SWR/J m 1108081.0 0.0   1   0.0 0.0 1108081.0, 1108081.0 1.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 519576.15 224470.2756 975754.635 63397.665
AXB19b/PgnJ m 579664.45 224470.2756 1035842.935 123485.965
AXB24/PgnJ m 686336.15 224470.2756 1142514.635 230157.665
BALB/cJ m 834417.1 183279.2125 1206885.2733 461948.9267
BXA16/PgnJ m 724514.7 224470.2756 1180693.185 268336.215
BXD19/TyJ m 518445.85 224470.2756 974624.335 62267.365
BXD28/TyJ m 592766.4 224470.2756 1048944.885 136587.915
BXH4/TyJ m 648131.9 224470.2756 1104310.385 191953.415
C3H/HeJ m 729393.6 224470.2756 1185572.085 273215.115
C57BL/6J m 1255816.22 141967.4676 1544328.8264 967303.6136
CXB11/HiAJ m 678130.6 224470.2756 1134309.085 221952.115
CXB12/HiAJ m 658151.75 224470.2756 1114330.235 201973.265
CXB13/HiAJ m 1146136.1333 183279.2125 1518604.3066 773667.96
CXB1/ByJ m 1225197.4667 183279.2125 1597665.64 852729.2934
CXB2/ByJ m 766188.2 183279.2125 1138656.3733 393720.0267
CXB3/ByJ m 965903.7 224470.2756 1422082.185 509725.215
CXB4/ByJ m 1126701.5 224470.2756 1582879.985 670523.015
CXB6/ByJ m 893411.9 183279.2125 1265880.0733 520943.7267
CXB7/ByJ m 721359.05 224470.2756 1177537.535 265180.565
CXB8/HiAJ m 733228.6333 183279.2125 1105696.8066 360760.46
CXB9/HiAJ m 898867.5 183279.2125 1271335.6733 526399.3267
DBA/2J m 493939.275 158724.454 816506.1752 171372.3748




  GWAS USING LINEAR MIXED MODELS