Project measure / variable:   HMDPpheno6   beta_Ala

ID, description, units MPD:50104   beta_Ala   liver beta-alanine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means722928   None
Median of the strain means719930   None
SD of the strain means± 238253
Coefficient of variation (CV)0.330
Min–max range of strain means200291   –   1281468   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 3306482399953.17 157451542854.913 1.5624 0.1204
Residuals 34 3426309513611.28 100773809223.861


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 881544.0 0.0   1   0.0 0.0 881544.0, 881544.0 0.67
A/J m 519576.0 152564.0   2   107879.0 0.294 411697.0, 627455.0 -0.85
AKR/J m 495552.0 0.0   1   0.0 0.0 495552.0, 495552.0 -0.95
AXB10/PgnJ m 871092.0 0.0   1   0.0 0.0 871092.0, 871092.0 0.62
AXB12/PgnJ m 854345.0 0.0   1   0.0 0.0 854345.0, 854345.0 0.55
AXB13/PgnJ m 592879.0 0.0   1   0.0 0.0 592879.0, 592879.0 -0.55
AXB15/PgnJ m 305016.0 0.0   1   0.0 0.0 305016.0, 305016.0 -1.75
AXB19a/PgnJ m 590429.0 0.0   1   0.0 0.0 590429.0, 590429.0 -0.56
AXB19b/PgnJ m 579664.0 9380.0   2   6633.0 0.0162 573032.0, 586297.0 -0.6
AXB19/PgnJ m 506482.0 0.0   1   0.0 0.0 506482.0, 506482.0 -0.91
AXB1/PgnJ m 990420.0 0.0   1   0.0 0.0 990420.0, 990420.0 1.12
AXB23/PgnJ m 439564.0 0.0   1   0.0 0.0 439564.0, 439564.0 -1.19
AXB24/PgnJ m 686336.0 14630.0   2   10345.0 0.0213 675991.0, 696681.0 -0.15
AXB2/PgnJ m 838202.0 0.0   1   0.0 0.0 838202.0, 838202.0 0.48
AXB4/PgnJ m 547404.0 0.0   1   0.0 0.0 547404.0, 547404.0 -0.74
AXB5/PgnJ m 504798.0 0.0   1   0.0 0.0 504798.0, 504798.0 -0.92
AXB6/PgnJ m 567644.0 0.0   1   0.0 0.0 567644.0, 567644.0 -0.65
AXB8/PgnJ m 759490.0 0.0   1   0.0 0.0 759490.0, 759490.0 0.15
BALB/cJ m 834417.0 8582.0   3 4955.0 0.0103 828525.0, 844263.0 0.47
BTBR T+ Itpr3tf/J m 491696.0 0.0   1   0.0 0.0 491696.0, 491696.0 -0.97
BUB/BnJ m 718502.0 0.0   1   0.0 0.0 718502.0, 718502.0 -0.02
BXA11/PgnJ m 219959.0 0.0   1   0.0 0.0 219959.0, 219959.0 -2.11
BXA12/PgnJ m 589062.0 0.0   1   0.0 0.0 589062.0, 589062.0 -0.56
BXA13/PgnJ m 818188.0 0.0   1   0.0 0.0 818188.0, 818188.0 0.4
BXA14/PgnJ m 779919.0 0.0   1   0.0 0.0 779919.0, 779919.0 0.24
BXA16/PgnJ m 724515.0 39937.0   2   28240.0 0.0551 696275.0, 752754.0 0.01
BXA1/PgnJ m 660285.0 0.0   1   0.0 0.0 660285.0, 660285.0 -0.26
BXA24/PgnJ m 1054842.0 0.0   1   0.0 0.0 1054842.0, 1054842.0 1.39
BXA25/PgnJ m 604173.0 0.0   1   0.0 0.0 604173.0, 604173.0 -0.5
BXA26/PgnJ m 557012.0 0.0   1   0.0 0.0 557012.0, 557012.0 -0.7
BXA2/PgnJ m 814775.0 0.0   1   0.0 0.0 814775.0, 814775.0 0.39
BXA4/PgnJ m 558961.0 0.0   1   0.0 0.0 558961.0, 558961.0 -0.69
BXA7/PgnJ m 874806.0 0.0   1   0.0 0.0 874806.0, 874806.0 0.64
BXA8/PgnJ m 469875.0 0.0   1   0.0 0.0 469875.0, 469875.0 -1.06
BXD11/TyJ m 615443.0 0.0   1   0.0 0.0 615443.0, 615443.0 -0.45
BXD12/TyJ m 342100.0 0.0   1   0.0 0.0 342100.0, 342100.0 -1.6
BXD13/TyJ m 302800.0 0.0   1   0.0 0.0 302800.0, 302800.0 -1.76
BXD14/TyJ m 789715.0 0.0   1   0.0 0.0 789715.0, 789715.0 0.28
BXD15/TyJ m 200291.0 0.0   1   0.0 0.0 200291.0, 200291.0 -2.19
BXD18/TyJ m 634683.0 0.0   1   0.0 0.0 634683.0, 634683.0 -0.37
BXD19/TyJ m 518446.0 148970.0   2   105338.0 0.287 413108.0, 623784.0 -0.86
BXD1/TyJ m 515166.0 0.0   1   0.0 0.0 515166.0, 515166.0 -0.87
BXD20/TyJ m 920875.0 0.0   1   0.0 0.0 920875.0, 920875.0 0.83
BXD21/TyJ m 560793.0 0.0   1   0.0 0.0 560793.0, 560793.0 -0.68
BXD22/TyJ m 535765.0 0.0   1   0.0 0.0 535765.0, 535765.0 -0.79
BXD24/TyJ m 753320.0 0.0   1   0.0 0.0 753320.0, 753320.0 0.13
BXD24/TyJ-Cep290rd16/J m 464481.0 0.0   1   0.0 0.0 464481.0, 464481.0 -1.08
BXD28/TyJ m 592766.0 20628.0   2   14586.0 0.0348 578180.0, 607352.0 -0.55
BXD29-Tlr4lps-2J/J m 688808.0 0.0   1   0.0 0.0 688808.0, 688808.0 -0.14
BXD2/TyJ m 857448.0 0.0   1   0.0 0.0 857448.0, 857448.0 0.56
BXD32/TyJ m 1001662.0 0.0   1   0.0 0.0 1001662.0, 1001662.0 1.17
BXD33/TyJ m 1244428.0 0.0   1   0.0 0.0 1244428.0, 1244428.0 2.19
BXD34/TyJ m 944993.0 0.0   1   0.0 0.0 944993.0, 944993.0 0.93
BXD36/TyJ m 868323.0 0.0   1   0.0 0.0 868323.0, 868323.0 0.61
BXD38/TyJ m 730840.0 0.0   1   0.0 0.0 730840.0, 730840.0 0.03
BXD39/TyJ m 258506.0 0.0   1   0.0 0.0 258506.0, 258506.0 -1.95
BXD40/TyJ m 865164.0 0.0   1   0.0 0.0 865164.0, 865164.0 0.6
BXD42/TyJ m 519713.0 0.0   1   0.0 0.0 519713.0, 519713.0 -0.85
BXD5/TyJ m 732717.0 0.0   1   0.0 0.0 732717.0, 732717.0 0.04
BXD6/TyJ m 623431.0 0.0   1   0.0 0.0 623431.0, 623431.0 -0.42
BXD8/TyJ m 692517.0 0.0   1   0.0 0.0 692517.0, 692517.0 -0.13
BXD9/TyJ m 518474.0 0.0   1   0.0 0.0 518474.0, 518474.0 -0.86
BXH10/TyJ m 1006604.0 0.0   1   0.0 0.0 1006604.0, 1006604.0 1.19
BXH19/TyJ m 877843.0 0.0   1   0.0 0.0 877843.0, 877843.0 0.65
BXH20/KccJ m 627385.0 0.0   1   0.0 0.0 627385.0, 627385.0 -0.4
BXH22/KccJ m 681297.0 0.0   1   0.0 0.0 681297.0, 681297.0 -0.17
BXH2/TyJ m 837162.0 0.0   1   0.0 0.0 837162.0, 837162.0 0.48
BXH4/TyJ m 648132.0 61850.0   2   43734.0 0.0954 604397.0, 691866.0 -0.31
BXH6/TyJ m 1126071.0 0.0   1   0.0 0.0 1126071.0, 1126071.0 1.69
BXH7/TyJ m 930598.0 0.0   1   0.0 0.0 930598.0, 930598.0 0.87
BXH8/TyJ m 848479.0 0.0   1   0.0 0.0 848479.0, 848479.0 0.53
BXH9/TyJ m 663579.0 0.0   1   0.0 0.0 663579.0, 663579.0 -0.25
C3H/HeJ m 729394.0 219222.0   2   155014.0 0.301 574380.0, 884407.0 0.03
C57BL/6J m 1255816.0 333594.0   5 149188.0 0.266 941396.0, 1772099.0 2.24
C57L/J m 821572.0 0.0   1   0.0 0.0 821572.0, 821572.0 0.41
C58/J m 1275363.0 0.0   1   0.0 0.0 1275363.0, 1275363.0 2.32
CAST/EiJ m 652216.0 0.0   1   0.0 0.0 652216.0, 652216.0 -0.3
CBA/J m 573881.0 0.0   1   0.0 0.0 573881.0, 573881.0 -0.63
CE/J m 1184964.0 0.0   1   0.0 0.0 1184964.0, 1184964.0 1.94
CXB11/HiAJ m 678131.0 276679.0   2   195642.0 0.408 482489.0, 873772.0 -0.19
CXB12/HiAJ m 658152.0 188832.0   2   133524.0 0.287 524627.0, 791676.0 -0.27
CXB13/HiAJ m 1146136.0 852108.0   3 491965.0 0.743 412181.0, 2080627.0 1.78
CXB1/ByJ m 1225197.0 386521.0   3 223158.0 0.315 780672.0, 1482048.0 2.11
CXB2/ByJ m 766188.0 407949.0   3 235529.0 0.532 354046.0, 1169811.0 0.18
CXB3/ByJ m 965904.0 127895.0   2   90436.0 0.132 875468.0, 1056339.0 1.02
CXB4/ByJ m 1126702.0 519589.0   2   367405.0 0.461 759297.0, 1494106.0 1.69
CXB6/ByJ m 893412.0 153755.0   3 88771.0 0.172 731498.0, 1037446.0 0.72
CXB7/ByJ m 721359.0 3109.0   2   2198.0 0.00431 719161.0, 723557.0 -0.01
CXB8/HiAJ m 733229.0 407008.0   3 234986.0 0.555 439247.0, 1197768.0 0.04
CXB9/HiAJ m 898868.0 95238.0   3 54986.0 0.106 803097.0, 993564.0 0.74
DBA/2J m 493939.0 27373.0   4 13687.0 0.0554 462799.0, 524073.0 -0.96
FVB/NJ m 856985.0 0.0   1   0.0 0.0 856985.0, 856985.0 0.56
I/LnJ m 1281468.0 0.0   1   0.0 0.0 1281468.0, 1281468.0 2.34
KK/HlJ m 837371.0 0.0   1   0.0 0.0 837371.0, 837371.0 0.48
LG/J m 341102.0 0.0   1   0.0 0.0 341102.0, 341102.0 -1.6
LP/J m 467095.0 0.0   1   0.0 0.0 467095.0, 467095.0 -1.07
MA/MyJ m 754200.0 0.0   1   0.0 0.0 754200.0, 754200.0 0.13
NOD/ShiLtJ m 561167.0 0.0   1   0.0 0.0 561167.0, 561167.0 -0.68
NON/ShiLtJ m 989651.0 0.0   1   0.0 0.0 989651.0, 989651.0 1.12
NZW/LacJ m 299039.0 0.0   1   0.0 0.0 299039.0, 299039.0 -1.78
PL/J m 726444.0 0.0   1   0.0 0.0 726444.0, 726444.0 0.01
RIIIS/J m 635573.0 0.0   1   0.0 0.0 635573.0, 635573.0 -0.37
SEA/GnJ m 735337.0 0.0   1   0.0 0.0 735337.0, 735337.0 0.05
SJL/J m 762026.0 0.0   1   0.0 0.0 762026.0, 762026.0 0.16
SM/J m 632170.0 0.0   1   0.0 0.0 632170.0, 632170.0 -0.38
SWR/J m 1108081.0 0.0   1   0.0 0.0 1108081.0, 1108081.0 1.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 519576.15 224470.2756 975754.635 63397.665
AXB19b/PgnJ m 579664.45 224470.2756 1035842.935 123485.965
AXB24/PgnJ m 686336.15 224470.2756 1142514.635 230157.665
BALB/cJ m 834417.1 183279.2125 1206885.2733 461948.9267
BXA16/PgnJ m 724514.7 224470.2756 1180693.185 268336.215
BXD19/TyJ m 518445.85 224470.2756 974624.335 62267.365
BXD28/TyJ m 592766.4 224470.2756 1048944.885 136587.915
BXH4/TyJ m 648131.9 224470.2756 1104310.385 191953.415
C3H/HeJ m 729393.6 224470.2756 1185572.085 273215.115
C57BL/6J m 1255816.22 141967.4676 1544328.8264 967303.6136
CXB11/HiAJ m 678130.6 224470.2756 1134309.085 221952.115
CXB12/HiAJ m 658151.75 224470.2756 1114330.235 201973.265
CXB13/HiAJ m 1146136.1333 183279.2125 1518604.3066 773667.96
CXB1/ByJ m 1225197.4667 183279.2125 1597665.64 852729.2934
CXB2/ByJ m 766188.2 183279.2125 1138656.3733 393720.0267
CXB3/ByJ m 965903.7 224470.2756 1422082.185 509725.215
CXB4/ByJ m 1126701.5 224470.2756 1582879.985 670523.015
CXB6/ByJ m 893411.9 183279.2125 1265880.0733 520943.7267
CXB7/ByJ m 721359.05 224470.2756 1177537.535 265180.565
CXB8/HiAJ m 733228.6333 183279.2125 1105696.8066 360760.46
CXB9/HiAJ m 898867.5 183279.2125 1271335.6733 526399.3267
DBA/2J m 493939.275 158724.454 816506.1752 171372.3748




  GWAS USING LINEAR MIXED MODELS

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