Project measure / variable:   HMDPpheno6   Ala

ID, description, units MPD:50101   Ala   liver alanine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver alanine (16h fast), relative abundance

BXH6/TyJSWR/JCE/JCAST/EiJCXB8/HiAJBXH20/KccJBXA14/PgnJBXA24/PgnJBXA7/PgnJBXD33/TyJAXB19b/PgnJCXB13/HiAJC3H/HeJC57BL/6JC58/JBXD36/TyJCXB1/ByJCXB3/ByJI/LnJBXD14/TyJCXB4/ByJBXD9/TyJBXD19/TyJCXB9/HiAJAXB10/PgnJBXD32/TyJBALB/cJAXB19/PgnJAXB19a/PgnJBXA16/PgnJNON/ShiLtJCXB7/ByJBXH8/TyJBXD13/TyJBXA26/PgnJBXA2/PgnJBXD40/TyJBXD5/TyJBXH7/TyJBXD15/TyJAXB8/PgnJ129X1/SvJBXD18/TyJBXD12/TyJCBA/JBXA13/PgnJCXB12/HiAJBXD29-Tlr4<lps-2J>/JBXH19/TyJAXB4/PgnJBXD2/TyJBXH2/TyJCXB2/ByJBXD6/TyJPL/JKK/HlJAXB24/PgnJBXD20/TyJBXH4/TyJBXH22/KccJCXB11/HiAJSM/JCXB6/ByJSEA/GnJBTBR T<+> Itpr3<tf>/JBXD28/TyJBXD11/TyJBUB/BnJAXB6/PgnJDBA/2JNOD/ShiLtJAXB1/PgnJAXB23/PgnJBXD1/TyJBXD22/TyJBXH9/TyJLP/JAXB15/PgnJAKR/JBXD39/TyJLG/JBXD24/TyJFVB/NJBXH10/TyJBXA1/PgnJBXD21/TyJRIIIS/JMA/MyJBXA8/PgnJBXA25/PgnJNZW/LacJBXA11/PgnJA/JBXD8/TyJAXB2/PgnJBXD24/TyJ-Cep290<rd16>/JAXB12/PgnJBXD42/TyJBXD34/TyJBXD38/TyJAXB5/PgnJAXB13/PgnJSJL/JBXA4/PgnJC57L/JBXA12/PgnJ (no units) 40,000,00050,000,00060,000,00070,000,00080,000,00090,000,000100,000,000110,000,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means71957552   None
Median of the strain means72892110   None
SD of the strain means± 14250872
Coefficient of variation (CV)0.198
Min–max range of strain means34337256   –   110930848   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 5043325072780600.0 240158336799076.0 3.2019 0.0013
Residuals 34 2550165513094880.0 75004868032202.5


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 75241144.0 0.0   1   0.0 0.0 75241144.0, 75241144.0 0.23
A/J m 53689634.0 8500688.0   2   6010894.0 0.158 47678740.0, 59700528.0 -1.28
AKR/J m 62295172.0 0.0   1   0.0 0.0 62295172.0, 62295172.0 -0.68
AXB10/PgnJ m 83584952.0 0.0   1   0.0 0.0 83584952.0, 83584952.0 0.82
AXB12/PgnJ m 52932328.0 0.0   1   0.0 0.0 52932328.0, 52932328.0 -1.34
AXB13/PgnJ m 48498944.0 0.0   1   0.0 0.0 48498944.0, 48498944.0 -1.65
AXB15/PgnJ m 62429928.0 0.0   1   0.0 0.0 62429928.0, 62429928.0 -0.67
AXB19a/PgnJ m 81713680.0 0.0   1   0.0 0.0 81713680.0, 81713680.0 0.68
AXB19b/PgnJ m 88363944.0 5165104.0   2   3652280.0 0.0585 84711664.0, 92016224.0 1.15
AXB19/PgnJ m 82419592.0 0.0   1   0.0 0.0 82419592.0, 82419592.0 0.73
AXB1/PgnJ m 66050920.0 0.0   1   0.0 0.0 66050920.0, 66050920.0 -0.41
AXB23/PgnJ m 64338984.0 0.0   1   0.0 0.0 64338984.0, 64338984.0 -0.53
AXB24/PgnJ m 71577084.0 17294751.0   2   12229236.0 0.242 59347848.0, 83806320.0 -0.03
AXB2/PgnJ m 53416080.0 0.0   1   0.0 0.0 53416080.0, 53416080.0 -1.3
AXB4/PgnJ m 73739144.0 0.0   1   0.0 0.0 73739144.0, 73739144.0 0.13
AXB5/PgnJ m 50845784.0 0.0   1   0.0 0.0 50845784.0, 50845784.0 -1.48
AXB6/PgnJ m 67495224.0 0.0   1   0.0 0.0 67495224.0, 67495224.0 -0.31
AXB8/PgnJ m 75379832.0 0.0   1   0.0 0.0 75379832.0, 75379832.0 0.24
BALB/cJ m 82786805.0 1709127.0   3 986765.0 0.0206 80921544.0, 84277752.0 0.76
BTBR T+ Itpr3tf/J m 69843928.0 0.0   1   0.0 0.0 69843928.0, 69843928.0 -0.15
BUB/BnJ m 68400808.0 0.0   1   0.0 0.0 68400808.0, 68400808.0 -0.25
BXA11/PgnJ m 54168104.0 0.0   1   0.0 0.0 54168104.0, 54168104.0 -1.25
BXA12/PgnJ m 34337256.0 0.0   1   0.0 0.0 34337256.0, 34337256.0 -2.64
BXA13/PgnJ m 74747064.0 0.0   1   0.0 0.0 74747064.0, 74747064.0 0.2
BXA14/PgnJ m 91576520.0 0.0   1   0.0 0.0 91576520.0, 91576520.0 1.38
BXA16/PgnJ m 81193332.0 5377389.0   2   3802388.0 0.0662 77390944.0, 84995720.0 0.65
BXA1/PgnJ m 59608980.0 0.0   1   0.0 0.0 59608980.0, 59608980.0 -0.87
BXA24/PgnJ m 91118440.0 0.0   1   0.0 0.0 91118440.0, 91118440.0 1.34
BXA25/PgnJ m 55989284.0 0.0   1   0.0 0.0 55989284.0, 55989284.0 -1.12
BXA26/PgnJ m 78807416.0 0.0   1   0.0 0.0 78807416.0, 78807416.0 0.48
BXA2/PgnJ m 78083736.0 0.0   1   0.0 0.0 78083736.0, 78083736.0 0.43
BXA4/PgnJ m 45324404.0 0.0   1   0.0 0.0 45324404.0, 45324404.0 -1.87
BXA7/PgnJ m 90224720.0 0.0   1   0.0 0.0 90224720.0, 90224720.0 1.28
BXA8/PgnJ m 56613944.0 0.0   1   0.0 0.0 56613944.0, 56613944.0 -1.08
BXD11/TyJ m 68863376.0 0.0   1   0.0 0.0 68863376.0, 68863376.0 -0.22
BXD12/TyJ m 75010416.0 0.0   1   0.0 0.0 75010416.0, 75010416.0 0.21
BXD13/TyJ m 79278648.0 0.0   1   0.0 0.0 79278648.0, 79278648.0 0.51
BXD14/TyJ m 86439512.0 0.0   1   0.0 0.0 86439512.0, 86439512.0 1.02
BXD15/TyJ m 75880192.0 0.0   1   0.0 0.0 75880192.0, 75880192.0 0.28
BXD18/TyJ m 75076344.0 0.0   1   0.0 0.0 75076344.0, 75076344.0 0.22
BXD19/TyJ m 84596832.0 1305953.0   2   923448.0 0.0154 83673384.0, 85520280.0 0.89
BXD1/TyJ m 64311948.0 0.0   1   0.0 0.0 64311948.0, 64311948.0 -0.54
BXD20/TyJ m 71405672.0 0.0   1   0.0 0.0 71405672.0, 71405672.0 -0.04
BXD21/TyJ m 59306160.0 0.0   1   0.0 0.0 59306160.0, 59306160.0 -0.89
BXD22/TyJ m 64293276.0 0.0   1   0.0 0.0 64293276.0, 64293276.0 -0.54
BXD24/TyJ m 61305072.0 0.0   1   0.0 0.0 61305072.0, 61305072.0 -0.75
BXD24/TyJ-Cep290rd16/J m 52973208.0 0.0   1   0.0 0.0 52973208.0, 52973208.0 -1.33
BXD28/TyJ m 69600156.0 6723720.0   2   4754388.0 0.0966 64845768.0, 74354544.0 -0.17
BXD29-Tlr4lps-2J/J m 73908016.0 0.0   1   0.0 0.0 73908016.0, 73908016.0 0.14
BXD2/TyJ m 73515504.0 0.0   1   0.0 0.0 73515504.0, 73515504.0 0.11
BXD32/TyJ m 83445368.0 0.0   1   0.0 0.0 83445368.0, 83445368.0 0.81
BXD33/TyJ m 90056720.0 0.0   1   0.0 0.0 90056720.0, 90056720.0 1.27
BXD34/TyJ m 52280372.0 0.0   1   0.0 0.0 52280372.0, 52280372.0 -1.38
BXD36/TyJ m 86868576.0 0.0   1   0.0 0.0 86868576.0, 86868576.0 1.05
BXD38/TyJ m 51095124.0 0.0   1   0.0 0.0 51095124.0, 51095124.0 -1.46
BXD39/TyJ m 61806540.0 0.0   1   0.0 0.0 61806540.0, 61806540.0 -0.71
BXD40/TyJ m 77438912.0 0.0   1   0.0 0.0 77438912.0, 77438912.0 0.38
BXD42/TyJ m 52875924.0 0.0   1   0.0 0.0 52875924.0, 52875924.0 -1.34
BXD5/TyJ m 77280288.0 0.0   1   0.0 0.0 77280288.0, 77280288.0 0.37
BXD6/TyJ m 72882720.0 0.0   1   0.0 0.0 72882720.0, 72882720.0 0.06
BXD8/TyJ m 53461160.0 0.0   1   0.0 0.0 53461160.0, 53461160.0 -1.3
BXD9/TyJ m 85620744.0 0.0   1   0.0 0.0 85620744.0, 85620744.0 0.96
BXH10/TyJ m 60626972.0 0.0   1   0.0 0.0 60626972.0, 60626972.0 -0.8
BXH19/TyJ m 73807168.0 0.0   1   0.0 0.0 73807168.0, 73807168.0 0.13
BXH20/KccJ m 93623280.0 0.0   1   0.0 0.0 93623280.0, 93623280.0 1.52
BXH22/KccJ m 70377664.0 0.0   1   0.0 0.0 70377664.0, 70377664.0 -0.11
BXH2/TyJ m 73347624.0 0.0   1   0.0 0.0 73347624.0, 73347624.0 0.1
BXH4/TyJ m 71229648.0 265329.0   2   187616.0 0.00372 71042032.0, 71417264.0 -0.05
BXH6/TyJ m 110930848.0 0.0   1   0.0 0.0 110930848.0, 110930848.0 2.73
BXH7/TyJ m 75930864.0 0.0   1   0.0 0.0 75930864.0, 75930864.0 0.28
BXH8/TyJ m 80157944.0 0.0   1   0.0 0.0 80157944.0, 80157944.0 0.58
BXH9/TyJ m 63411828.0 0.0   1   0.0 0.0 63411828.0, 63411828.0 -0.6
C3H/HeJ m 88010444.0 13673505.0   2   9668628.0 0.155 78341816.0, 97679072.0 1.13
C57BL/6J m 87119814.0 11869580.0   5 5308238.0 0.136 70133576.0, 102231376.0 1.06
C57L/J m 34714396.0 0.0   1   0.0 0.0 34714396.0, 34714396.0 -2.61
C58/J m 86896128.0 0.0   1   0.0 0.0 86896128.0, 86896128.0 1.05
CAST/EiJ m 93770624.0 0.0   1   0.0 0.0 93770624.0, 93770624.0 1.53
CBA/J m 74795472.0 0.0   1   0.0 0.0 74795472.0, 74795472.0 0.2
CE/J m 98353960.0 0.0   1   0.0 0.0 98353960.0, 98353960.0 1.85
CXB11/HiAJ m 70361688.0 1771693.0   2   1252776.0 0.0252 69108912.0, 71614464.0 -0.11
CXB12/HiAJ m 73943008.0 820821.0   2   580408.0 0.0111 73362600.0, 74523416.0 0.14
CXB13/HiAJ m 88013171.0 6505701.0   3 3756068.0 0.0739 82259672.0, 95072872.0 1.13
CXB1/ByJ m 86838357.0 3799401.0   3 2193585.0 0.0438 84569448.0, 91224656.0 1.04
CXB2/ByJ m 72901499.0 1513638.0   3 873899.0 0.0208 71431616.0, 74455392.0 0.07
CXB3/ByJ m 86807184.0 4445462.0   2   3143416.0 0.0512 83663768.0, 89950600.0 1.04
CXB4/ByJ m 85765564.0 15333282.0   2   10842268.0 0.179 74923296.0, 96607832.0 0.97
CXB6/ByJ m 69939188.0 11569201.0   3 6679481.0 0.165 57679900.0, 80665440.0 -0.14
CXB7/ByJ m 80396168.0 3867071.0   2   2734432.0 0.0481 77661736.0, 83130600.0 0.59
CXB8/HiAJ m 93672029.0 11202542.0   3 6467790.0 0.12 83697960.0, 105792464.0 1.52
CXB9/HiAJ m 84517995.0 11229177.0   3 6483168.0 0.133 73207416.0, 95663960.0 0.88
DBA/2J m 66338453.0 7239850.0   4 3619925.0 0.109 57181592.0, 72585248.0 -0.39
FVB/NJ m 61002596.0 0.0   1   0.0 0.0 61002596.0, 61002596.0 -0.77
I/LnJ m 86803944.0 0.0   1   0.0 0.0 86803944.0, 86803944.0 1.04
KK/HlJ m 71764096.0 0.0   1   0.0 0.0 71764096.0, 71764096.0 -0.01
LG/J m 61602032.0 0.0   1   0.0 0.0 61602032.0, 61602032.0 -0.73
LP/J m 62481148.0 0.0   1   0.0 0.0 62481148.0, 62481148.0 -0.66
MA/MyJ m 57785568.0 0.0   1   0.0 0.0 57785568.0, 57785568.0 -0.99
NOD/ShiLtJ m 66185076.0 0.0   1   0.0 0.0 66185076.0, 66185076.0 -0.41
NON/ShiLtJ m 80439976.0 0.0   1   0.0 0.0 80439976.0, 80439976.0 0.6
NZW/LacJ m 54403816.0 0.0   1   0.0 0.0 54403816.0, 54403816.0 -1.23
PL/J m 72620560.0 0.0   1   0.0 0.0 72620560.0, 72620560.0 0.05
RIIIS/J m 59294296.0 0.0   1   0.0 0.0 59294296.0, 59294296.0 -0.89
SEA/GnJ m 69871864.0 0.0   1   0.0 0.0 69871864.0, 69871864.0 -0.15
SJL/J m 46462636.0 0.0   1   0.0 0.0 46462636.0, 46462636.0 -1.79
SM/J m 70151304.0 0.0   1   0.0 0.0 70151304.0, 70151304.0 -0.13
SWR/J m 102318696.0 0.0   1   0.0 0.0 102318696.0, 102318696.0 2.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 53689634.0 6123923.0903 66134943.0758 41244324.9242
AXB19b/PgnJ m 88363944.0 6123923.0903 100809253.0758 75918634.9242
AXB24/PgnJ m 71577084.0 6123923.0903 84022393.0758 59131774.9242
BALB/cJ m 82786805.3333 5000162.2651 92948357.6423 72625253.0244
BXA16/PgnJ m 81193332.0 6123923.0903 93638641.0758 68748022.9242
BXD19/TyJ m 84596832.0 6123923.0903 97042141.0758 72151522.9242
BXD28/TyJ m 69600156.0 6123923.0903 82045465.0758 57154846.9242
BXH4/TyJ m 71229648.0 6123923.0903 83674957.0758 58784338.9242
C3H/HeJ m 88010444.0 6123923.0903 100455753.0758 75565134.9242
C57BL/6J m 87119814.4 3873109.0362 94990918.9728 79248709.8272
CXB11/HiAJ m 70361688.0 6123923.0903 82806997.0758 57916378.9242
CXB12/HiAJ m 73943008.0 6123923.0903 86388317.0758 61497698.9242
CXB13/HiAJ m 88013170.6667 5000162.2651 98174722.9756 77851618.3577
CXB1/ByJ m 86838357.3333 5000162.2651 96999909.6423 76676805.0244
CXB2/ByJ m 72901498.6667 5000162.2651 83063050.9756 62739946.3577
CXB3/ByJ m 86807184.0 6123923.0903 99252493.0758 74361874.9242
CXB4/ByJ m 85765564.0 6123923.0903 98210873.0758 73320254.9242
CXB6/ByJ m 69939188.0 5000162.2651 80100740.309 59777635.691
CXB7/ByJ m 80396168.0 6123923.0903 92841477.0758 67950858.9242
CXB8/HiAJ m 93672029.3333 5000162.2651 103833581.6423 83510477.0244
CXB9/HiAJ m 84517994.6667 5000162.2651 94679546.9756 74356442.3577
DBA/2J m 66338453.0 4330267.5446 75138615.4414 57538290.5586




  GWAS USING LINEAR MIXED MODELS

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