Project measure / variable:   HMDPpheno6   Ala

ID, description, units MPD:50101   Ala   liver alanine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver alanine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means71957552   None
Median of the strain means72892110   None
SD of the strain means± 14250872
Coefficient of variation (CV)0.198
Min–max range of strain means34337256   –   110930848   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 5043325072780600.0 240158336799076.0 3.2019 0.0013
Residuals 34 2550165513094880.0 75004868032202.5


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 75241144.0 0.0   1   0.0 0.0 75241144.0, 75241144.0 0.23
A/J m 53689634.0 8500688.0   2   6010894.0 0.158 47678740.0, 59700528.0 -1.28
AKR/J m 62295172.0 0.0   1   0.0 0.0 62295172.0, 62295172.0 -0.68
AXB10/PgnJ m 83584952.0 0.0   1   0.0 0.0 83584952.0, 83584952.0 0.82
AXB12/PgnJ m 52932328.0 0.0   1   0.0 0.0 52932328.0, 52932328.0 -1.34
AXB13/PgnJ m 48498944.0 0.0   1   0.0 0.0 48498944.0, 48498944.0 -1.65
AXB15/PgnJ m 62429928.0 0.0   1   0.0 0.0 62429928.0, 62429928.0 -0.67
AXB19a/PgnJ m 81713680.0 0.0   1   0.0 0.0 81713680.0, 81713680.0 0.68
AXB19b/PgnJ m 88363944.0 5165104.0   2   3652280.0 0.0585 84711664.0, 92016224.0 1.15
AXB19/PgnJ m 82419592.0 0.0   1   0.0 0.0 82419592.0, 82419592.0 0.73
AXB1/PgnJ m 66050920.0 0.0   1   0.0 0.0 66050920.0, 66050920.0 -0.41
AXB23/PgnJ m 64338984.0 0.0   1   0.0 0.0 64338984.0, 64338984.0 -0.53
AXB24/PgnJ m 71577084.0 17294751.0   2   12229236.0 0.242 59347848.0, 83806320.0 -0.03
AXB2/PgnJ m 53416080.0 0.0   1   0.0 0.0 53416080.0, 53416080.0 -1.3
AXB4/PgnJ m 73739144.0 0.0   1   0.0 0.0 73739144.0, 73739144.0 0.13
AXB5/PgnJ m 50845784.0 0.0   1   0.0 0.0 50845784.0, 50845784.0 -1.48
AXB6/PgnJ m 67495224.0 0.0   1   0.0 0.0 67495224.0, 67495224.0 -0.31
AXB8/PgnJ m 75379832.0 0.0   1   0.0 0.0 75379832.0, 75379832.0 0.24
BALB/cJ m 82786805.0 1709127.0   3 986765.0 0.0206 80921544.0, 84277752.0 0.76
BTBR T+ Itpr3tf/J m 69843928.0 0.0   1   0.0 0.0 69843928.0, 69843928.0 -0.15
BUB/BnJ m 68400808.0 0.0   1   0.0 0.0 68400808.0, 68400808.0 -0.25
BXA11/PgnJ m 54168104.0 0.0   1   0.0 0.0 54168104.0, 54168104.0 -1.25
BXA12/PgnJ m 34337256.0 0.0   1   0.0 0.0 34337256.0, 34337256.0 -2.64
BXA13/PgnJ m 74747064.0 0.0   1   0.0 0.0 74747064.0, 74747064.0 0.2
BXA14/PgnJ m 91576520.0 0.0   1   0.0 0.0 91576520.0, 91576520.0 1.38
BXA16/PgnJ m 81193332.0 5377389.0   2   3802388.0 0.0662 77390944.0, 84995720.0 0.65
BXA1/PgnJ m 59608980.0 0.0   1   0.0 0.0 59608980.0, 59608980.0 -0.87
BXA24/PgnJ m 91118440.0 0.0   1   0.0 0.0 91118440.0, 91118440.0 1.34
BXA25/PgnJ m 55989284.0 0.0   1   0.0 0.0 55989284.0, 55989284.0 -1.12
BXA26/PgnJ m 78807416.0 0.0   1   0.0 0.0 78807416.0, 78807416.0 0.48
BXA2/PgnJ m 78083736.0 0.0   1   0.0 0.0 78083736.0, 78083736.0 0.43
BXA4/PgnJ m 45324404.0 0.0   1   0.0 0.0 45324404.0, 45324404.0 -1.87
BXA7/PgnJ m 90224720.0 0.0   1   0.0 0.0 90224720.0, 90224720.0 1.28
BXA8/PgnJ m 56613944.0 0.0   1   0.0 0.0 56613944.0, 56613944.0 -1.08
BXD11/TyJ m 68863376.0 0.0   1   0.0 0.0 68863376.0, 68863376.0 -0.22
BXD12/TyJ m 75010416.0 0.0   1   0.0 0.0 75010416.0, 75010416.0 0.21
BXD13/TyJ m 79278648.0 0.0   1   0.0 0.0 79278648.0, 79278648.0 0.51
BXD14/TyJ m 86439512.0 0.0   1   0.0 0.0 86439512.0, 86439512.0 1.02
BXD15/TyJ m 75880192.0 0.0   1   0.0 0.0 75880192.0, 75880192.0 0.28
BXD18/TyJ m 75076344.0 0.0   1   0.0 0.0 75076344.0, 75076344.0 0.22
BXD19/TyJ m 84596832.0 1305953.0   2   923448.0 0.0154 83673384.0, 85520280.0 0.89
BXD1/TyJ m 64311948.0 0.0   1   0.0 0.0 64311948.0, 64311948.0 -0.54
BXD20/TyJ m 71405672.0 0.0   1   0.0 0.0 71405672.0, 71405672.0 -0.04
BXD21/TyJ m 59306160.0 0.0   1   0.0 0.0 59306160.0, 59306160.0 -0.89
BXD22/TyJ m 64293276.0 0.0   1   0.0 0.0 64293276.0, 64293276.0 -0.54
BXD24/TyJ m 61305072.0 0.0   1   0.0 0.0 61305072.0, 61305072.0 -0.75
BXD24/TyJ-Cep290rd16/J m 52973208.0 0.0   1   0.0 0.0 52973208.0, 52973208.0 -1.33
BXD28/TyJ m 69600156.0 6723720.0   2   4754388.0 0.0966 64845768.0, 74354544.0 -0.17
BXD29-Tlr4lps-2J/J m 73908016.0 0.0   1   0.0 0.0 73908016.0, 73908016.0 0.14
BXD2/TyJ m 73515504.0 0.0   1   0.0 0.0 73515504.0, 73515504.0 0.11
BXD32/TyJ m 83445368.0 0.0   1   0.0 0.0 83445368.0, 83445368.0 0.81
BXD33/TyJ m 90056720.0 0.0   1   0.0 0.0 90056720.0, 90056720.0 1.27
BXD34/TyJ m 52280372.0 0.0   1   0.0 0.0 52280372.0, 52280372.0 -1.38
BXD36/TyJ m 86868576.0 0.0   1   0.0 0.0 86868576.0, 86868576.0 1.05
BXD38/TyJ m 51095124.0 0.0   1   0.0 0.0 51095124.0, 51095124.0 -1.46
BXD39/TyJ m 61806540.0 0.0   1   0.0 0.0 61806540.0, 61806540.0 -0.71
BXD40/TyJ m 77438912.0 0.0   1   0.0 0.0 77438912.0, 77438912.0 0.38
BXD42/TyJ m 52875924.0 0.0   1   0.0 0.0 52875924.0, 52875924.0 -1.34
BXD5/TyJ m 77280288.0 0.0   1   0.0 0.0 77280288.0, 77280288.0 0.37
BXD6/TyJ m 72882720.0 0.0   1   0.0 0.0 72882720.0, 72882720.0 0.06
BXD8/TyJ m 53461160.0 0.0   1   0.0 0.0 53461160.0, 53461160.0 -1.3
BXD9/TyJ m 85620744.0 0.0   1   0.0 0.0 85620744.0, 85620744.0 0.96
BXH10/TyJ m 60626972.0 0.0   1   0.0 0.0 60626972.0, 60626972.0 -0.8
BXH19/TyJ m 73807168.0 0.0   1   0.0 0.0 73807168.0, 73807168.0 0.13
BXH20/KccJ m 93623280.0 0.0   1   0.0 0.0 93623280.0, 93623280.0 1.52
BXH22/KccJ m 70377664.0 0.0   1   0.0 0.0 70377664.0, 70377664.0 -0.11
BXH2/TyJ m 73347624.0 0.0   1   0.0 0.0 73347624.0, 73347624.0 0.1
BXH4/TyJ m 71229648.0 265329.0   2   187616.0 0.00372 71042032.0, 71417264.0 -0.05
BXH6/TyJ m 110930848.0 0.0   1   0.0 0.0 110930848.0, 110930848.0 2.73
BXH7/TyJ m 75930864.0 0.0   1   0.0 0.0 75930864.0, 75930864.0 0.28
BXH8/TyJ m 80157944.0 0.0   1   0.0 0.0 80157944.0, 80157944.0 0.58
BXH9/TyJ m 63411828.0 0.0   1   0.0 0.0 63411828.0, 63411828.0 -0.6
C3H/HeJ m 88010444.0 13673505.0   2   9668628.0 0.155 78341816.0, 97679072.0 1.13
C57BL/6J m 87119814.0 11869580.0   5 5308238.0 0.136 70133576.0, 102231376.0 1.06
C57L/J m 34714396.0 0.0   1   0.0 0.0 34714396.0, 34714396.0 -2.61
C58/J m 86896128.0 0.0   1   0.0 0.0 86896128.0, 86896128.0 1.05
CAST/EiJ m 93770624.0 0.0   1   0.0 0.0 93770624.0, 93770624.0 1.53
CBA/J m 74795472.0 0.0   1   0.0 0.0 74795472.0, 74795472.0 0.2
CE/J m 98353960.0 0.0   1   0.0 0.0 98353960.0, 98353960.0 1.85
CXB11/HiAJ m 70361688.0 1771693.0   2   1252776.0 0.0252 69108912.0, 71614464.0 -0.11
CXB12/HiAJ m 73943008.0 820821.0   2   580408.0 0.0111 73362600.0, 74523416.0 0.14
CXB13/HiAJ m 88013171.0 6505701.0   3 3756068.0 0.0739 82259672.0, 95072872.0 1.13
CXB1/ByJ m 86838357.0 3799401.0   3 2193585.0 0.0438 84569448.0, 91224656.0 1.04
CXB2/ByJ m 72901499.0 1513638.0   3 873899.0 0.0208 71431616.0, 74455392.0 0.07
CXB3/ByJ m 86807184.0 4445462.0   2   3143416.0 0.0512 83663768.0, 89950600.0 1.04
CXB4/ByJ m 85765564.0 15333282.0   2   10842268.0 0.179 74923296.0, 96607832.0 0.97
CXB6/ByJ m 69939188.0 11569201.0   3 6679481.0 0.165 57679900.0, 80665440.0 -0.14
CXB7/ByJ m 80396168.0 3867071.0   2   2734432.0 0.0481 77661736.0, 83130600.0 0.59
CXB8/HiAJ m 93672029.0 11202542.0   3 6467790.0 0.12 83697960.0, 105792464.0 1.52
CXB9/HiAJ m 84517995.0 11229177.0   3 6483168.0 0.133 73207416.0, 95663960.0 0.88
DBA/2J m 66338453.0 7239850.0   4 3619925.0 0.109 57181592.0, 72585248.0 -0.39
FVB/NJ m 61002596.0 0.0   1   0.0 0.0 61002596.0, 61002596.0 -0.77
I/LnJ m 86803944.0 0.0   1   0.0 0.0 86803944.0, 86803944.0 1.04
KK/HlJ m 71764096.0 0.0   1   0.0 0.0 71764096.0, 71764096.0 -0.01
LG/J m 61602032.0 0.0   1   0.0 0.0 61602032.0, 61602032.0 -0.73
LP/J m 62481148.0 0.0   1   0.0 0.0 62481148.0, 62481148.0 -0.66
MA/MyJ m 57785568.0 0.0   1   0.0 0.0 57785568.0, 57785568.0 -0.99
NOD/ShiLtJ m 66185076.0 0.0   1   0.0 0.0 66185076.0, 66185076.0 -0.41
NON/ShiLtJ m 80439976.0 0.0   1   0.0 0.0 80439976.0, 80439976.0 0.6
NZW/LacJ m 54403816.0 0.0   1   0.0 0.0 54403816.0, 54403816.0 -1.23
PL/J m 72620560.0 0.0   1   0.0 0.0 72620560.0, 72620560.0 0.05
RIIIS/J m 59294296.0 0.0   1   0.0 0.0 59294296.0, 59294296.0 -0.89
SEA/GnJ m 69871864.0 0.0   1   0.0 0.0 69871864.0, 69871864.0 -0.15
SJL/J m 46462636.0 0.0   1   0.0 0.0 46462636.0, 46462636.0 -1.79
SM/J m 70151304.0 0.0   1   0.0 0.0 70151304.0, 70151304.0 -0.13
SWR/J m 102318696.0 0.0   1   0.0 0.0 102318696.0, 102318696.0 2.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 53689634.0 6123923.0903 66134943.0758 41244324.9242
AXB19b/PgnJ m 88363944.0 6123923.0903 100809253.0758 75918634.9242
AXB24/PgnJ m 71577084.0 6123923.0903 84022393.0758 59131774.9242
BALB/cJ m 82786805.3333 5000162.2651 92948357.6423 72625253.0244
BXA16/PgnJ m 81193332.0 6123923.0903 93638641.0758 68748022.9242
BXD19/TyJ m 84596832.0 6123923.0903 97042141.0758 72151522.9242
BXD28/TyJ m 69600156.0 6123923.0903 82045465.0758 57154846.9242
BXH4/TyJ m 71229648.0 6123923.0903 83674957.0758 58784338.9242
C3H/HeJ m 88010444.0 6123923.0903 100455753.0758 75565134.9242
C57BL/6J m 87119814.4 3873109.0362 94990918.9728 79248709.8272
CXB11/HiAJ m 70361688.0 6123923.0903 82806997.0758 57916378.9242
CXB12/HiAJ m 73943008.0 6123923.0903 86388317.0758 61497698.9242
CXB13/HiAJ m 88013170.6667 5000162.2651 98174722.9756 77851618.3577
CXB1/ByJ m 86838357.3333 5000162.2651 96999909.6423 76676805.0244
CXB2/ByJ m 72901498.6667 5000162.2651 83063050.9756 62739946.3577
CXB3/ByJ m 86807184.0 6123923.0903 99252493.0758 74361874.9242
CXB4/ByJ m 85765564.0 6123923.0903 98210873.0758 73320254.9242
CXB6/ByJ m 69939188.0 5000162.2651 80100740.309 59777635.691
CXB7/ByJ m 80396168.0 6123923.0903 92841477.0758 67950858.9242
CXB8/HiAJ m 93672029.3333 5000162.2651 103833581.6423 83510477.0244
CXB9/HiAJ m 84517994.6667 5000162.2651 94679546.9756 74356442.3577
DBA/2J m 66338453.0 4330267.5446 75138615.4414 57538290.5586




  GWAS USING LINEAR MIXED MODELS