Project measure / variable:   Schughart2   bw

ID, description, units MPD:49601   bw   body weight, pre-infection   [g]  
influenza A (H1N1) virus study
Data set, strains Schughart2   BXD w/par   56 strains     sex: f     age: 9-18wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Schughart2 - body weight, pre-infection

BXD13/TyJBXD11/TyJBXD16/TyJBXD9/TyJBXD2/TyJBXD15/TyJBXD48a/RwwJBXD39/TyJBXD65a/RwwJBXD61/RwwJBXD32/TyJBXD14/TyJBXD42/TyJBXD100/RwwJB6D2F1/JBXD28/TyJBXD34/TyJBXD21/TyJDBA/2JBXD65b/RwwJBXD1/TyJBXD5/TyJBXD73/RwwJBXD56/RwwJBXD8/TyJBXD51/RwwJBXD60/RwwJC57BL/6JBXD20/TyJBXD43/RwwJBXD19/TyJBXD31/TyJBXD36/TyJBXD71/RwwJBXD38/TyJBXD84/RwwJBXD75/RwwJBXD40/TyJBXD89/RwwJBXD62/RwwJBXD44/RwwJBXD65/RwwJBXD23/TyJBXD69/RwwJBXD67/RwwJBXD98/RwwJBXD55/RwwJBXD18/TyJBXD70/RwwJBXD79/RwwJBXD73b/RwwJBXD87/RwwJBXD12/TyJBXD102/RwwJBXD74/RwwJBXD73a/RwwJ g 152025303540femalemale


  MEASURE SUMMARY
Measure Summary Female
Number of strains tested56 strains
Mean of the strain means21.4   g
Median of the strain means20.9   g
SD of the strain means± 3.12
Coefficient of variation (CV)0.146
Min–max range of strain means16.0   –   32.6   g
Mean sample size per strain6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 55 3003.8105 54.6147 13.0566 < 0.0001
Residuals 355 1484.9381 4.1829


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 56 (56)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
B6D2F1/J f 22.4 1.28   29 0.238 0.0572 19.6, 25.6 0.32
BXD100/RwwJ f 22.6 0.814   5 0.364 0.036 21.2, 23.2 0.38
BXD102/RwwJ f 17.7 1.46   5 0.653 0.0826 15.7, 19.1 -1.19
BXD11/TyJ f 28.1 5.44   8 1.92 0.194 22.7, 37.3 2.14
BXD12/TyJ f 17.8 1.12   3 0.644 0.0628 16.5, 18.6 -1.16
BXD13/TyJ f 32.6 6.17   6 2.52 0.189 26.0, 42.9 3.58
BXD14/TyJ f 22.7 1.16   5 0.518 0.051 21.6, 24.5 0.41
BXD15/TyJ f 25.9 1.24   5 0.553 0.0477 25.0, 28.0 1.44
BXD16/TyJ f 27.8 1.45   5 0.65 0.0522 26.5, 30.3 2.05
BXD18/TyJ f 18.8 1.46   5 0.652 0.0777 16.9, 20.6 -0.84
BXD19/TyJ f 20.7 1.15   5 0.513 0.0554 19.4, 22.2 -0.23
BXD1/TyJ f 21.9 1.43   5 0.638 0.0652 20.1, 24.0 0.16
BXD20/TyJ f 20.9 0.415   5 0.185 0.0198 20.6, 21.6 -0.16
BXD21/TyJ f 22.0 0.808   4 0.404 0.0367 20.9, 22.7 0.19
BXD23/TyJ f 19.1 1.32   9 0.44 0.0692 18.1, 22.0 -0.74
BXD28/TyJ f 22.4 2.42   4 1.21 0.108 19.7, 25.3 0.32
BXD2/TyJ f 27.2 2.04   5 0.912 0.0749 24.5, 30.0 1.85
BXD31/TyJ f 20.7 2.87   7 1.08 0.139 15.5, 23.6 -0.23
BXD32/TyJ f 23.5 3.74   7 1.41 0.159 18.7, 28.8 0.67
BXD34/TyJ f 22.1 0.964   3 0.557 0.0436 21.4, 23.2 0.22
BXD36/TyJ f 20.1 1.0   5 0.448 0.0498 18.7, 21.5 -0.42
BXD38/TyJ f 19.8 0.992   5 0.444 0.0501 18.5, 21.2 -0.52
BXD39/TyJ f 25.0 3.08   8 1.09 0.123 19.3, 30.7 1.15
BXD40/TyJ f 19.5 1.52   12 0.437 0.0776 17.3, 22.2 -0.61
BXD42/TyJ f 22.7 2.1   4 1.05 0.0925 20.7, 25.6 0.41
BXD43/RwwJ f 20.8 4.8   7 1.81 0.231 14.4, 27.5 -0.2
BXD44/RwwJ f 19.3 0.886   5 0.396 0.0459 18.4, 20.5 -0.68
BXD48a/RwwJ f 25.6 1.3   4 0.649 0.0506 24.7, 27.5 1.34
BXD51/RwwJ f 21.1 2.08   6 0.849 0.0987 19.2, 24.3 -0.1
BXD55/RwwJ f 18.9 0.955   5 0.427 0.0505 18.0, 20.3 -0.81
BXD56/RwwJ f 21.3 1.05   5 0.47 0.0494 20.4, 23.0 -0.04
BXD5/TyJ f 21.8 1.66   4 0.829 0.0761 20.0, 24.0 0.12
BXD60/RwwJ f 21.1 1.46   5 0.652 0.069 18.9, 22.5 -0.1
BXD61/RwwJ f 23.8 3.22   6 1.32 0.135 20.8, 28.5 0.76
BXD62/RwwJ f 19.3 1.73   5 0.774 0.0895 16.7, 21.3 -0.68
BXD65a/RwwJ f 24.6 2.3   4 1.15 0.0936 21.9, 27.5 1.02
BXD65b/RwwJ f 22.0 0.85   5 0.38 0.0387 20.6, 22.7 0.19
BXD65/RwwJ f 19.1 1.82   8 0.642 0.0951 17.0, 21.6 -0.74
BXD67/RwwJ f 19.0 0.999   5 0.447 0.0527 17.7, 20.4 -0.77
BXD69/RwwJ f 19.1 0.611   5 0.273 0.032 18.1, 19.5 -0.74
BXD70/RwwJ f 18.7 1.08   5 0.484 0.0578 17.7, 20.5 -0.87
BXD71/RwwJ f 20.0 0.92   5 0.412 0.0461 18.9, 21.4 -0.45
BXD73a/RwwJ f 16.0 0.837   4 0.418 0.0523 14.9, 16.7 -1.73
BXD73b/RwwJ f 18.7 2.44   5 1.09 0.13 15.9, 21.4 -0.87
BXD73/RwwJ f 21.6 1.17   5 0.524 0.0542 20.5, 23.3 0.06
BXD74/RwwJ f 17.2 1.57   5 0.7 0.0909 16.1, 19.9 -1.35
BXD75/RwwJ f 19.7 1.02   4 0.512 0.0519 18.2, 20.4 -0.55
BXD79/RwwJ f 18.7 1.28   5 0.571 0.0682 17.7, 20.8 -0.87
BXD84/RwwJ f 19.7 1.11   5 0.495 0.0563 17.7, 20.3 -0.55
BXD87/RwwJ f 18.3 1.32   5 0.592 0.0723 16.3, 19.4 -1.0
BXD89/RwwJ f 19.5 0.665   4 0.333 0.0341 18.6, 20.1 -0.61
BXD8/TyJ f 21.2 2.82   8 0.996 0.133 17.5, 24.4 -0.07
BXD98/RwwJ f 18.9 1.26   4 0.63 0.0669 17.6, 20.5 -0.81
BXD9/TyJ f 27.3 2.82   5 1.26 0.103 24.5, 31.1 1.89
C57BL/6J f 20.9 1.36   39 0.218 0.0651 18.8, 24.6 -0.16
DBA/2J f 22.0 1.59   60 0.205 0.072 18.2, 25.8 0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 22.3897 0.3798 23.1366 21.6427
BXD100/RwwJ f 22.58 0.9147 24.3788 20.7812
BXD102/RwwJ f 17.68 0.9147 19.4788 15.8812
BXD11/TyJ f 28.0625 0.7231 29.4846 26.6404
BXD12/TyJ f 17.7667 1.1808 20.0889 15.4444
BXD13/TyJ f 32.5833 0.835 34.2254 30.9412
BXD14/TyJ f 22.7 0.9147 24.4988 20.9012
BXD15/TyJ f 25.92 0.9147 27.7188 24.1212
BXD16/TyJ f 27.824 0.9147 29.6228 26.0252
BXD18/TyJ f 18.76 0.9147 20.5588 16.9612
BXD19/TyJ f 20.74 0.9147 22.5388 18.9412
BXD1/TyJ f 21.88 0.9147 23.6788 20.0812
BXD20/TyJ f 20.92 0.9147 22.7188 19.1212
BXD21/TyJ f 22.0 1.0226 24.0111 19.9889
BXD23/TyJ f 19.0667 0.6817 20.4074 17.7259
BXD28/TyJ f 22.425 1.0226 24.4361 20.4139
BXD2/TyJ f 27.22 0.9147 29.0188 25.4212
BXD31/TyJ f 20.6714 0.773 22.1917 19.1512
BXD32/TyJ f 23.4714 0.773 24.9917 21.9512
BXD34/TyJ f 22.1 1.1808 24.4223 19.7777
BXD36/TyJ f 20.12 0.9147 21.9188 18.3212
BXD38/TyJ f 19.8 0.9147 21.5988 18.0012
BXD39/TyJ f 25.0125 0.7231 26.4346 23.5904
BXD40/TyJ f 19.5167 0.5904 20.6778 18.3555
BXD42/TyJ f 22.7 1.0226 24.7111 20.6889
BXD43/RwwJ f 20.7714 0.773 22.2917 19.2512
BXD44/RwwJ f 19.3 0.9147 21.0988 17.5012
BXD48a/RwwJ f 25.65 1.0226 27.6611 23.6389
BXD51/RwwJ f 21.0667 0.835 22.7088 19.4246
BXD55/RwwJ f 18.92 0.9147 20.7188 17.1212
BXD56/RwwJ f 21.3 0.9147 23.0988 19.5012
BXD5/TyJ f 21.775 1.0226 23.7861 19.7639
BXD60/RwwJ f 21.14 0.9147 22.9388 19.3412
BXD61/RwwJ f 23.8333 0.835 25.4754 22.1912
BXD62/RwwJ f 19.32 0.9147 21.1188 17.5212
BXD65a/RwwJ f 24.575 1.0226 26.5861 22.5639
BXD65b/RwwJ f 21.98 0.9147 23.7788 20.1812
BXD65/RwwJ f 19.1 0.7231 20.5221 17.6779
BXD67/RwwJ f 18.96 0.9147 20.7588 17.1612
BXD69/RwwJ f 19.06 0.9147 20.8588 17.2612
BXD70/RwwJ f 18.72 0.9147 20.5188 16.9212
BXD71/RwwJ f 19.98 0.9147 21.7788 18.1812
BXD73a/RwwJ f 16.0 1.0226 18.0111 13.9889
BXD73b/RwwJ f 18.74 0.9147 20.5388 16.9412
BXD73/RwwJ f 21.62 0.9147 23.4188 19.8212
BXD74/RwwJ f 17.22 0.9147 19.0188 15.4212
BXD75/RwwJ f 19.7 1.0226 21.7111 17.6889
BXD79/RwwJ f 18.74 0.9147 20.5388 16.9412
BXD84/RwwJ f 19.66 0.9147 21.4588 17.8612
BXD87/RwwJ f 18.3 0.9147 20.0988 16.5012
BXD89/RwwJ f 19.525 1.0226 21.5361 17.5139
BXD8/TyJ f 21.19 0.7231 22.6121 19.7679
BXD98/RwwJ f 18.85 1.0226 20.8611 16.8389
BXD9/TyJ f 27.34 0.9147 29.1388 25.5412
C57BL/6J f 20.9051 0.3275 21.5492 20.261
DBA/2J f 22.0483 0.264 22.5676 21.5291




  GWAS USING LINEAR MIXED MODELS

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